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  • Experiment set3IT039 for Pseudomonas syringae pv. syringae B728a

    Compare to:

    apoplastic; Lima bean

    Group: in planta
    Media:
    Culturing: SyringaeB728a_ML2
    By: Tyler Helmann on 3/16/18

    Specific Phenotypes

    For 5 genes in this experiment

    SEED Subsystems

    Subsystem #Specific
    Alginate metabolism 2
    Type IV pilus 1

    Metabolic Maps

    Color code by fitness: see overview map or list of maps.

    Maps containing gene(s) with specific phenotypes:

    • Fructose and mannose metabolism
    • Ubiquinone and menaquinone biosynthesis
    • Histidine metabolism
    • Tyrosine metabolism
    • Tryptophan metabolism
    • Benzoxazinone biosynthesis
    • Nucleotide sugars metabolism
    • Naphthalene and anthracene degradation
    • Porphyrin and chlorophyll metabolism
    • Carotenoid biosynthesis - General
    • Phenylpropanoid biosynthesis
    • Flavonoid biosynthesis
    • Anthocyanin biosynthesis
    • Alkaloid biosynthesis I
    • Insect hormone biosynthesis
    • Biosynthesis of alkaloids derived from shikimate pathway

    MetaCyc Pathways

    Pathways that contain genes with specific phenotypes:

    Pathway #Steps #Present #Specific
    alginate biosynthesis I (algal) 3 3 3
    alginate biosynthesis II (bacterial) 7 6 5