Experiment set3IT039 for Pseudomonas syringae pv. syringae B728a
apoplastic; Lima bean
Group: in plantaMedia:
Culturing: SyringaeB728a_ML2
By: Tyler Helmann on 3/16/18
Specific Phenotypes
For 5 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Alginate metabolism | 2 |
| Type IV pilus | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Ubiquinone and menaquinone biosynthesis
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Nucleotide sugars metabolism
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| alginate biosynthesis I (algal) | 3 | 3 | 3 |
| alginate biosynthesis II (bacterial) | 7 | 6 | 5 |