Experiment set3IT039 for Sinorhizobium meliloti 1021

Compare to:

LB with Paraquat dichloride 0.3 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
SMc02640 +2.8 10.1 UDP-glucuronic acid epimerase compare
SMc02112 +2.8 17.9 hypothetical protein compare
SMc00150 +2.8 25.3 hypothetical protein compare
SMc01099 +2.8 9.8 tRNA pseudouridine synthase A compare
SMc03900 +2.7 21.0 cyclic beta-1,2-glucan ABc transporter compare
SMc04382 +2.7 23.3 beta-(1,2)-glucan production associated transmembrane protein compare
SMc04094 +2.2 4.8 hypothetical protein compare
SMc02365 +2.2 8.3 protease precursor protein compare
SMc00458 +2.1 15.0 transcriptional regulator compare
SMc00131 +2.0 12.4 transcriptional regulator compare
SMc00349 +1.9 10.8 GTP-binding protein LepA compare
SMc00647 +1.9 6.2 ribosomal large subunit pseudouridine synthase compare
SMc02367 +1.9 13.7 sensor histidine kinase transmembrane protein compare
SMc02366 +1.9 13.2 transcriptional regulator compare
SMc02695 +1.9 12.0 GTP-dependent nucleic acid-binding protein EngD compare
SMa1639 +1.8 1.6 hypothetical protein compare
SMc03855 +1.8 3.0 hypothetical protein compare
SMc00495 +1.7 5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03863 +1.7 5.1 50S ribosomal protein L19 compare
SMc02659 +1.7 7.2 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc03069 +1.7 5.5 6-phosphogluconolactonase compare
SMc01613 +1.7 7.0 ribose-5-phosphate isomerase B compare
SMc01858 +1.6 1.8 S-adenosyl-methyltransferase MraW compare
SMc01852 +1.6 7.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc03111 +1.6 8.7 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc04235 +1.5 5.3 tRNA-dihydrouridine synthase A compare
SMc00505 +1.5 2.8 hypothetical protein compare
SMa1240 +1.5 1.4 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc00129 +1.5 7.8 sensor histidine kinase compare
SMc00482 +1.5 7.9 hypothetical protein compare
SMc01124 +1.5 8.0 PII uridylyl-transferase compare
SMc01223 +1.5 3.5 transcriptional regulator compare
SMc02713 +1.5 2.5 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02497 +1.5 2.8 hypothetical protein compare
SMc00522 +1.4 8.2 ATP-dependent RNA helicase compare
SMc00169 +1.4 10.3 malic enzyme compare
SMc00761 +1.4 7.8 oxidoreductase compare
SMc00403 +1.4 7.0 NOL1/NOP2/SUN family signature protein compare
SMc04000 +1.4 2.4 hypothetical protein compare
SMc00622 +1.3 7.7 ribonuclease D protein compare
SMc00494 +1.3 2.0 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00187 +1.3 2.8 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc04454 +1.3 4.8 ABC transporter ATP-binding protein compare
SM_b21397 +1.3 1.7 hypothetical protein compare
SMc00329 +1.3 2.5 iron response regulator protein compare
SMc01907 +1.3 8.9 hypothetical protein compare
SMc03826 +1.2 2.5 argininosuccinate synthase compare
SMc04003 +1.2 2.0 50S ribosomal protein L36 compare
SMc02166 +1.2 6.0 dihydroorotase compare
SMa1052 +1.2 1.5 hypothetical protein compare
SM_b21480 +1.2 1.4 hypothetical protein compare
SMc01241 +1.2 2.5 hypothetical protein compare
SMc00998 +1.2 6.3 signal peptide protein compare
SMc03931 +1.2 8.4 sarcosine oxidase subunit alpha compare
SMc01275 +1.1 5.7 ribosomal large subunit pseudouridine synthase C protein compare
SM_b20294 +1.1 1.2 transcriptional regulator NanR compare
SM_b20616 +1.1 1.6 thiamine biosynthesis oxidoreductase compare
SMc00565 +1.1 1.4 50S ribosomal protein L9 compare
SMc01439 +1.1 3.8 hypothetical protein compare
SM_b21580 +1.1 1.2 hypothetical protein compare
SMc01206 +1.1 2.1 queuine tRNA-ribosyltransferase compare
SMc03932 +1.1 3.2 sarcosine oxidase subunit delta compare
SMc01698 +1.1 6.0 oxidoreductase compare
SM_b20347 +1.1 2.2 transcriptional regulator compare
SMc02138 +1.1 6.2 acetylornithine transaminase compare
SMc04002 +1.1 2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc01454 +1.1 6.0 hypothetical protein compare
SMc02137 +1.1 2.8 ornithine carbamoyltransferase compare
SM_b21491 +1.0 5.0 hypothetical protein compare
SMc00061 +1.0 3.2 hypothetical protein compare
SMa0886 +1.0 1.7 hypothetical protein compare
SMc03933 +1.0 8.0 sarcosine oxidase subunit B protein compare
SMc00320 +1.0 3.9 ribosome-binding factor A compare
SMc00083 +1.0 3.1 hypothetical protein compare
SMc02765 +1.0 7.1 tryptophan synthase subunit alpha compare
SMc00012 +1.0 1.6 cytochrome C oxidase assembly protein compare
SMc00513 +1.0 4.5 amino acid-binding periplasmic protein compare
SM_b20302 +1.0 2.2 hypothetical protein compare
SMc02095 +1.0 5.1 hypothetical protein compare
SM_b20146 +1.0 3.9 pyridoxal phosphate biosynthetic protein compare
SMc01508 +1.0 2.9 hypothetical protein compare
SMc00877 +1.0 7.2 transcriptional regulator compare
SMc02384 +1.0 3.9 glycosyltransferase transmembrane protein compare
SMa1960 +1.0 1.7 hypothetical protein compare
SMa0326 +1.0 2.3 short chain alcohol dehydrogenase-related dehydrogenase compare
SMc02714 +1.0 1.4 hypothetical protein compare
SMc01116 +1.0 4.7 acyltransferase transmembrane protein compare
SMc02245 +1.0 3.3 dihydroorotate dehydrogenase 2 compare
SM_b21170 +1.0 3.0 guanylate kinase compare
SM_b20613 +1.0 5.7 C4-dicarboxylate transport transcriptional regulator compare
SMc02565 +1.0 4.2 hypothetical protein compare
SMc01094 +0.9 2.5 multidrug efflux system transmembrane protein compare
SMc02287 +0.9 3.3 DNA-invertase compare
SM_b20303 +0.9 2.7 hypothetical protein compare
SMc02273 +0.9 7.9 fatty acid synthase transmembrane protein compare
SMa0349 +0.9 1.7 hypothetical protein compare
SMa0643 +0.9 1.2 transposase compare
SMc00648 +0.9 4.2 hypothetical protein compare
SMc01942 +0.9 2.1 urease accessory protein compare
SM_b21432 +0.9 3.5 iron uptake ABC transporter substrate-binding protein precursor compare
SM_b21192 +0.9 4.7 fructose-1,6-bisphosphate aldolase compare
SMc02576 +0.9 0.9 acetyltransferase compare
SMc01120 +0.9 2.7 hypothetical protein compare
SMc00566 +0.9 2.7 hypothetical protein compare
SMa0659 +0.9 1.5 cytochrome c binding protein, carboxyl terminus compare
SMc00618 +0.9 5.9 polyphosphate kinase compare
SMa0838 +0.9 2.2 SyrA protein involved in EPS production compare
SM_b20145 +0.9 2.0 hypothetical protein compare
SMc03289 +0.9 1.6 hypothetical protein compare
SMc00176 +0.9 4.3 hypothetical protein compare
SM_b22001 +0.9 1.1 hypothetical protein compare
SMa1654 +0.9 3.1 GntR family transcriptional regulator compare
SMc02906 +0.9 0.9 hypothetical protein compare
SM_b21253 +0.9 3.4 hypothetical protein compare
SMc01440 +0.9 4.0 hydrolase serine protease transmembrane protein compare
SMc03008 +0.9 1.0 chemotaxis protein compare
SMa0771 +0.9 1.5 hypothetical protein compare
SMc00175 +0.9 4.2 ABC transporter ATP-binding protein compare
SM_b20226 +0.9 1.1 hypothetical protein compare
SMc03880 +0.9 4.1 hypothetical protein compare
SMc04441 +0.8 1.2 hypothetical protein compare
SMc01471 +0.8 1.6 cytochrome C oxidase assembly factor transmembrane protein compare
SMa0514 +0.8 2.5 gluconate kinase compare
SMc03981 +0.8 3.3 phosphoglycerate kinase compare
SMc01273 +0.8 5.4 S-formylglutathione hydrolase compare
SMc00070 +0.8 3.2 signal peptide protein compare
SMa2151 +0.8 2.6 DNA-binding protein compare
SMa1008 +0.8 3.1 hypothetical protein compare
SMa5002 +0.8 3.1 hypothetical protein compare
SMc03930 +0.8 1.2 sarcosine oxidase subunit gamma compare
SMc00325 +0.8 4.4 hypothetical protein compare
SMc02434 +0.8 1.4 hypothetical protein compare
SMc01727 +0.8 2.9 hypothetical protein compare
SMc00412 +0.8 2.8 orotidine 5'-phosphate decarboxylase compare
SM_b20815 +0.8 2.0 outer membrane protein assembly protein compare
SM_b21428 +0.8 2.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SMa1124 +0.8 1.9 hypothetical protein compare
SMc02269 +0.8 4.3 capsular polysaccharide biosynthesis/export protein compare
SMa0267 +0.8 3.0 GntR family transcriptional regulator compare
SMa0277 +0.8 1.9 hypothetical protein compare
SMc02766 +0.8 5.5 tryptophan synthase subunit beta compare
SM_b21266 +0.8 3.1 hypothetical protein compare
SMc01653 +0.8 1.7 ABC transporter ATP-binding protein compare
SMc03053 +0.8 0.7 flagellar biosynthesis protein FliQ compare
SMc00229 +0.8 3.0 hypothetical protein compare
SMc00093 +0.8 5.0 choline dehydrogenase compare
SMc01556 +0.8 1.4 hypothetical protein compare
SMc00711 +0.8 2.2 cyclohexadienyl dehydrogenase compare
SMa1921 +0.8 1.3 hypothetical protein compare
SMc02136 +0.8 3.2 Hsp33-like chaperonin compare
SMc01107 +0.8 2.8 hypothetical protein compare
SM_b20261 +0.8 1.2 malate dehydrogenase compare
SMc01540 +0.8 2.1 hypothetical protein compare
SMc04315 +0.8 3.4 transcriptional regulator compare
SMc00321 +0.7 3.8 tRNA pseudouridine synthase B compare
SMc01769 +0.7 5.2 hypothetical protein compare
SMc00727 +0.7 4.0 3-hydroxybutyryl-CoA dehydrogenase compare
SMc02757 +0.7 2.2 hypothetical protein compare
SMc02050 +0.7 1.7 trigger factor compare
SMa0433 +0.7 1.6 hypothetical protein compare
SMa1635 +0.7 1.3 hypothetical protein compare
SMc00993 +0.7 3.2 phosphoribosylamine--glycine ligase compare
SM_b21256 +0.7 4.3 nucleotide sugar oxidase compare
SMc01619 +0.7 1.0 hypothetical protein compare
SMc02238 +0.7 1.1 hypothetical protein compare
SMc00554 +0.7 2.8 amidophosphoribosyltransferase compare
SMc02687 +0.7 2.5 hypothetical protein compare
SMc02684 +0.7 3.0 hydrolase/peptidase compare
SMc02520 +0.7 3.6 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SM_b20665 +0.7 1.7 partial transposase of insertion sequence ISRm17 protein compare
SMa0854 +0.7 0.8 3-ketoacyl-ACP reductase compare
SMc01951 +0.7 3.0 high-affinity branched-chain amino acid ABC transporter permease compare
SMc01768 +0.7 2.0 transcriptional regulator compare
SMc03973 +0.7 2.9 hypothetical protein compare
SMc02319 +0.7 1.8 hypothetical protein compare
SMc04327 +0.7 0.7 hypothetical protein compare
SMc01991 +0.7 0.8 short chain dehydrogenase compare
SMc01193 +0.7 4.3 hypothetical protein compare
SMc02385 +0.7 2.1 hypothetical protein compare
SM_b21100 +0.7 1.8 polysaccharide deacetylase compare
SMc01522 +0.7 1.0 hypothetical protein compare
SMc01256 +0.7 3.1 L-serine dehydratase compare
SMc01160 +0.7 1.5 hypothetical protein compare
SM_b20684 +0.7 4.7 hypothetical protein compare
SMc01885 +0.7 3.7 aminopeptidase P protein compare
SM_b20834 +0.7 3.8 surface saccharide synthesis protein compare
SM_b21633 +0.7 0.7 enoyl-CoA hydratase compare
SMc02879 +0.7 2.1 hypothetical protein compare
SMc02864 +0.7 1.6 molybdopterin biosynthesis protein MoeB compare
SM_b20092 +0.7 3.1 hypothetical protein compare
SM_b21431 +0.7 3.2 hypothetical protein compare
SMa1658 +0.7 1.1 hypothetical protein compare
SM_b21265 +0.7 3.5 glycosyltransferase compare
SMc00806 +0.7 2.1 hypothetical protein compare
SMc02449 +0.7 1.3 acetyltransferase compare
SMc02121 +0.7 0.8 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SM_b20444 +0.7 1.7 hypothetical protein compare
SMc01933 +0.7 0.7 hypothetical protein compare
SM_b20464 +0.7 1.9 hypothetical protein compare
SMc00904 +0.7 2.4 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Paraquat dichloride in Sinorhizobium meliloti 1021

For stress Paraquat dichloride across organisms