Experiment set3IT039 for Herbaspirillum seropedicae SmR1

Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

Group: plant
Media: LB + Root Epiphytic Bacteria, pH=7
Culturing: HerbieS_ML4, flask, at 30 (C), shaken=120 rpm
By: Thalita Tuleski on 19-May-16
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 5 genes in this experiment

For plant Root Epiphytic Bacteria in Herbaspirillum seropedicae SmR1

For plant Root Epiphytic Bacteria across organisms

SEED Subsystems

Subsystem	#Specific
Ammonia assimilation	1
Homogentisate pathway of aromatic compound degradation	1
Polyhydroxybutyrate metabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ascorbate and aldarate metabolism
• Glycerophospholipid metabolism
• 2,4-Dichlorobenzoate degradation
• Butanoate metabolism
• Retinol metabolism
• Alkaloid biosynthesis II