Experiment set3IT039 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Nalidixic acid sodium salt 0.08 mg/ml

200 most important genes:

  gene name fitness t score description  
ABZR86_RS11880 -4.3 -6.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS07665 -4.3 -4.1 exodeoxyribonuclease V subunit beta compare
ABZR86_RS06265 -4.2 -6.3 3-deoxy-D-manno-octulosonic acid kinase compare
ABZR86_RS07215 -4.1 -4.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS04495 -4.0 -1.5 hypothetical protein compare
ABZR86_RS11870 -3.9 -10.2 phospholipid-binding protein MlaC compare
ABZR86_RS00675 -3.9 -2.4 regulatory protein RecX compare
ABZR86_RS00660 -3.9 -5.2 recombinase RecA compare
ABZR86_RS09885 -3.7 -2.5 trypsin-like peptidase domain-containing protein compare
ABZR86_RS17210 -3.5 -12.6 TolC family outer membrane protein compare
ABZR86_RS10710 -3.3 -2.3 transcriptional regulator NrdR compare
ABZR86_RS18450 -3.2 -3.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS09395 -3.2 -8.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS12885 -3.2 -4.3 magnesium-translocating P-type ATPase compare
ABZR86_RS10840 -3.1 -3.3 Holliday junction branch migration protein RuvA compare
ABZR86_RS07565 -3.0 -11.5 efflux RND transporter periplasmic adaptor subunit compare
ABZR86_RS06275 -2.9 -2.8 DUF6165 family protein compare
ABZR86_RS11875 -2.9 -7.9 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS07820 -2.9 -1.5 Spy/CpxP family protein refolding chaperone compare
ABZR86_RS09415 -2.8 -7.2 ABC transporter ATP-binding protein compare
ABZR86_RS11885 -2.8 -3.4 ATP-binding cassette domain-containing protein compare
ABZR86_RS13920 -2.8 -12.6 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS13895 -2.8 -13.0 glycosyltransferase family 39 protein compare
ABZR86_RS07180 -2.7 -6.8 RNA polymerase sigma factor RpoE compare
ABZR86_RS07570 -2.7 -11.4 efflux RND transporter permease subunit compare
ABZR86_RS09405 -2.7 -6.3 TolC family protein compare
ABZR86_RS09380 -2.6 -5.9 response regulator transcription factor compare
ABZR86_RS18715 -2.6 -7.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS07660 -2.6 -4.0 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS11900 -2.5 -3.8 ribonuclease PH compare
ABZR86_RS01150 -2.5 -1.3 hypothetical protein compare
ABZR86_RS09410 -2.4 -5.2 FtsX-like permease family protein compare
ABZR86_RS15265 -2.4 -11.0 DJ-1/PfpI family protein compare
ABZR86_RS06815 -2.4 -9.1 exodeoxyribonuclease VII large subunit compare
ABZR86_RS09385 -2.3 -4.5 sensor histidine kinase compare
ABZR86_RS15565 -2.3 -12.5 hypothetical protein compare
ABZR86_RS21420 -2.3 -5.8 alpha/beta fold hydrolase compare
ABZR86_RS06270 -2.3 -3.6 glycosyltransferase family 9 protein compare
ABZR86_RS05665 -2.2 -5.5 DNA repair protein RecN compare
ABZR86_RS09935 -2.1 -1.2 DUF4105 domain-containing protein compare
ABZR86_RS08415 -2.1 -1.8 OmpA family protein compare
ABZR86_RS21335 -2.1 -1.1 response regulator transcription factor compare
ABZR86_RS18720 -1.9 -4.1 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS15405 -1.9 -11.6 efflux RND transporter periplasmic adaptor subunit conserved
ABZR86_RS08845 -1.9 -4.4 DNA repair protein RadA compare
ABZR86_RS09400 -1.9 -4.3 MtnX-like HAD-IB family phosphatase compare
ABZR86_RS15400 -1.9 -11.3 efflux RND transporter permease subunit conserved
ABZR86_RS14930 -1.8 -7.7 exodeoxyribonuclease III compare
ABZR86_RS09930 -1.7 -1.7 transporter associated domain-containing protein compare
ABZR86_RS15410 -1.7 -12.9 LysR family transcriptional regulator compare
ABZR86_RS13915 -1.7 -8.9 glycosyltransferase family 2 protein compare
ABZR86_RS01570 -1.7 -1.5 Ohr family peroxiredoxin compare
ABZR86_RS15280 -1.7 -7.7 YafY family protein compare
ABZR86_RS06940 -1.6 -5.1 hypothetical protein compare
ABZR86_RS11295 -1.6 -4.1 DUF721 domain-containing protein compare
ABZR86_RS11975 -1.6 -1.1 UPF0149 family protein compare
ABZR86_RS08865 -1.5 -1.2 30S ribosomal protein S18 compare
ABZR86_RS09485 -1.5 -1.1 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS17380 -1.5 -1.5 LON peptidase substrate-binding domain-containing protein compare
ABZR86_RS17015 -1.5 -9.3 DNA polymerase I compare
ABZR86_RS04375 -1.5 -1.2 GNAT family N-acetyltransferase compare
ABZR86_RS01730 -1.5 -1.2 DUF3820 family protein compare
ABZR86_RS02720 -1.5 -1.3 ribonuclease E compare
ABZR86_RS00005 -1.4 -1.2 hypothetical protein compare
ABZR86_RS08250 -1.4 -2.3 phosphate signaling complex protein PhoU compare
ABZR86_RS21435 -1.4 -3.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS19135 -1.4 -1.0 hypothetical protein compare
ABZR86_RS20820 -1.4 -1.0 CsbD family protein compare
ABZR86_RS14785 -1.4 -1.4 hypothetical protein compare
ABZR86_RS16040 -1.4 -1.0 molybdopterin-dependent oxidoreductase compare
ABZR86_RS17180 -1.4 -7.5 glycosyltransferase compare
ABZR86_RS05005 -1.4 -2.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS17155 -1.3 -4.3 mitochondrial fission ELM1 family protein compare
ABZR86_RS15395 -1.3 -5.8 efflux transporter outer membrane subunit compare
ABZR86_RS02215 -1.3 -2.0 FHA domain-containing protein compare
ABZR86_RS18585 -1.3 -5.6 polysaccharide biosynthesis/export family protein compare
ABZR86_RS05550 -1.3 -2.2 lipopolysaccharide assembly protein LapB compare
ABZR86_RS07545 -1.3 -3.0 5'-nucleotidase compare
ABZR86_RS16525 -1.3 -5.1 alpha/beta fold hydrolase compare
ABZR86_RS15305 -1.3 -3.6 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS03445 -1.3 -3.3 TetR/AcrR family transcriptional regulator compare
ABZR86_RS22035 -1.3 -1.3 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
ABZR86_RS19710 -1.2 -7.3 glycosyltransferase family 2 protein compare
ABZR86_RS09960 -1.2 -3.1 pilin compare
ABZR86_RS12760 -1.2 -6.4 LTA synthase family protein compare
ABZR86_RS07580 -1.2 -2.5 metalloregulator ArsR/SmtB family transcription factor compare
ABZR86_RS07175 -1.2 -1.6 sigma-E factor negative regulatory protein compare
ABZR86_RS20360 -1.2 -2.5 ATP-binding protein compare
ABZR86_RS21480 -1.2 -3.6 arginase family protein compare
ABZR86_RS07340 -1.2 -1.1 tRNA-Leu compare
ABZR86_RS19460 -1.2 -1.1 RDD family protein compare
ABZR86_RS14610 -1.2 -1.3 conjugal transfer protein TrbN compare
ABZR86_RS04440 -1.2 -2.7 cbb3-type cytochrome c oxidase subunit 3 compare
ABZR86_RS22045 -1.2 -7.9 tetratricopeptide repeat protein compare
ABZR86_RS11815 -1.1 -4.3 penicillin-binding protein 1A compare
ABZR86_RS06580 -1.1 -2.0 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS05440 -1.1 -3.1 tetratricopeptide repeat protein compare
ABZR86_RS09130 -1.1 -2.1 paraquat-inducible protein A compare
ABZR86_RS04920 -1.1 -0.9 pentapeptide repeat-containing protein compare
ABZR86_RS19785 -1.1 -5.9 phosphoenolpyruvate--protein phosphotransferase compare
ABZR86_RS17510 -1.1 -8.0 carboxy terminal-processing peptidase compare
ABZR86_RS05485 -1.1 -3.8 ATP-binding cassette domain-containing protein compare
ABZR86_RS03730 -1.1 -1.3 VOC family protein compare
ABZR86_RS18360 -1.1 -5.9 response regulator transcription factor compare
ABZR86_RS12350 -1.1 -1.1 glycine zipper 2TM domain-containing protein compare
ABZR86_RS11860 -1.0 -6.8 VacJ family lipoprotein compare
ABZR86_RS08960 -1.0 -2.2 peptidylprolyl isomerase compare
ABZR86_RS02245 -1.0 -6.2 excinuclease ABC subunit UvrC compare
ABZR86_RS05690 -1.0 -0.6 RnfH family protein compare
ABZR86_RS14260 -1.0 -2.4 hypothetical protein compare
ABZR86_RS21485 -1.0 -5.2 GNAT family N-acetyltransferase compare
ABZR86_RS09120 -1.0 -5.2 MlaD family protein compare
ABZR86_RS19515 -1.0 -4.9 molybdopterin cofactor-binding domain-containing protein compare
ABZR86_RS22135 -1.0 -1.8 hypothetical protein compare
ABZR86_RS03640 -1.0 -1.5 DUF488 family protein compare
ABZR86_RS09840 -1.0 -0.7 Trm112 family protein compare
ABZR86_RS05010 -1.0 -1.1 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS06630 -1.0 -2.0 phosphopyruvate hydratase compare
ABZR86_RS04820 -1.0 -1.5 N-acetyltransferase compare
ABZR86_RS18705 -0.9 -0.8 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS13655 -0.9 -3.5 hypothetical protein compare
ABZR86_RS00650 -0.9 -7.0 TonB-dependent receptor compare
ABZR86_RS13870 -0.9 -2.6 DNA-processing protein DprA compare
ABZR86_RS12505 -0.9 -3.7 SDR family oxidoreductase compare
ABZR86_RS05570 -0.9 -2.2 (d)CMP kinase compare
ABZR86_RS03035 -0.9 -0.7 CBS domain-containing protein compare
ABZR86_RS00790 -0.9 -2.6 hypothetical protein compare
ABZR86_RS02195 -0.9 -2.8 ATP-dependent Clp protease adapter ClpS compare
ABZR86_RS17875 -0.9 -2.0 hypothetical protein compare
ABZR86_RS19105 -0.9 -3.7 leucyl aminopeptidase compare
ABZR86_RS13380 -0.9 -1.1 Sec-independent protein translocase subunit TatA compare
ABZR86_RS01585 -0.9 -1.5 LysR family transcriptional regulator compare
ABZR86_RS21340 -0.9 -5.3 sensor histidine kinase compare
ABZR86_RS18365 -0.9 -6.5 ATP-binding protein compare
ABZR86_RS19225 -0.9 -1.9 site-specific tyrosine recombinase XerD compare
ABZR86_RS06590 -0.9 -1.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS11485 -0.8 -2.1 hypothetical protein compare
ABZR86_RS01455 -0.8 -1.3 efflux RND transporter periplasmic adaptor subunit compare
ABZR86_RS22190 -0.8 -0.7 hypothetical protein compare
ABZR86_RS07495 -0.8 -1.0 hypothetical protein compare
ABZR86_RS05340 -0.8 -3.2 HAD family hydrolase compare
ABZR86_RS10260 -0.8 -1.7 hypothetical protein compare
ABZR86_RS02310 -0.8 -1.3 hypothetical protein compare
ABZR86_RS06780 -0.8 -0.8 CvpA family protein compare
ABZR86_RS18245 -0.8 -1.7 hypothetical protein compare
ABZR86_RS13370 -0.8 -3.9 twin-arginine translocase subunit TatC compare
ABZR86_RS04660 -0.8 -2.4 DUF4142 domain-containing protein compare
ABZR86_RS00640 -0.8 -2.6 sigma-70 family RNA polymerase sigma factor compare
ABZR86_RS13350 -0.8 -5.2 S41 family peptidase compare
ABZR86_RS17185 -0.8 -5.1 O-antigen ligase family protein compare
ABZR86_RS19520 -0.8 -1.6 (2Fe-2S)-binding protein compare
ABZR86_RS08325 -0.8 -2.2 helix-turn-helix domain-containing protein compare
ABZR86_RS04570 -0.8 -0.8 hypothetical protein compare
ABZR86_RS11970 -0.8 -4.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR86_RS03735 -0.8 -2.4 DUF4199 domain-containing protein compare
ABZR86_RS13500 -0.8 -2.2 accessory factor UbiK family protein compare
ABZR86_RS17695 -0.8 -1.0 MerR family DNA-binding protein compare
ABZR86_RS19630 -0.7 -1.4 hypothetical protein compare
ABZR86_RS20620 -0.7 -0.9 cupin domain-containing protein compare
ABZR86_RS14790 -0.7 -3.8 helix-turn-helix transcriptional regulator compare
ABZR86_RS10255 -0.7 -1.7 hypothetical protein compare
ABZR86_RS16965 -0.7 -4.8 DNA helicase II compare
ABZR86_RS21255 -0.7 -2.1 DUF2007 domain-containing protein compare
ABZR86_RS19640 -0.7 -1.7 hypothetical protein compare
ABZR86_RS11620 -0.7 -3.7 30S ribosomal protein S6--L-glutamate ligase compare
ABZR86_RS17485 -0.7 -5.5 septal ring lytic transglycosylase RlpA family protein compare
ABZR86_RS07430 -0.7 -2.0 hypothetical protein compare
ABZR86_RS01885 -0.7 -0.5 DUF5668 domain-containing protein compare
ABZR86_RS02680 -0.7 -1.4 hypothetical protein compare
ABZR86_RS11735 -0.7 -0.7 large-conductance mechanosensitive channel protein MscL compare
ABZR86_RS10135 -0.7 -3.6 isoaspartyl peptidase/L-asparaginase family protein compare
ABZR86_RS14635 -0.7 -1.8 hypothetical protein compare
ABZR86_RS06785 -0.7 -1.7 SPOR domain-containing protein compare
ABZR86_RS13415 -0.7 -1.0 DUF1656 domain-containing protein compare
ABZR86_RS04420 -0.7 -1.1 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR86_RS14100 -0.7 -3.4 DNA adenine methylase compare
ABZR86_RS00420 -0.7 -2.6 NAD(P)-dependent oxidoreductase compare
ABZR86_RS18730 -0.7 -3.1 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS09125 -0.7 -3.9 paraquat-inducible protein A compare
ABZR86_RS08125 -0.7 -3.4 hypothetical protein compare
ABZR86_RS22115 -0.7 -1.1 hypothetical protein compare
ABZR86_RS21325 -0.7 -1.3 ABC transporter ATP-binding protein compare
ABZR86_RS10035 -0.7 -3.1 glycosyltransferase family 2 protein compare
ABZR86_RS19920 -0.7 -1.2 MGMT family protein compare
ABZR86_RS06360 -0.7 -2.8 cell wall hydrolase compare
ABZR86_RS19715 -0.7 -4.0 Dps family protein compare
ABZR86_RS19895 -0.7 -1.3 RNA methyltransferase compare
ABZR86_RS20105 -0.7 -1.0 flagellar basal body L-ring protein FlgH compare
ABZR86_RS09845 -0.7 -3.9 DUF1631 domain-containing protein compare
ABZR86_RS20330 -0.7 -1.7 LytTR family DNA-binding domain-containing protein compare
ABZR86_RS08010 -0.7 -3.4 phosphoribosylanthranilate isomerase compare
ABZR86_RS16300 -0.7 -1.3 YlcI/YnfO family protein compare
ABZR86_RS08890 -0.7 -0.5 hypothetical protein compare
ABZR86_RS08145 -0.7 -2.4 DUF2147 domain-containing protein compare
ABZR86_RS14690 -0.7 -2.6 phosphogluconate dehydratase compare
ABZR86_RS14755 -0.7 -4.1 DUF2239 family protein compare
ABZR86_RS18545 -0.7 -4.0 hypothetical protein compare
ABZR86_RS04945 -0.6 -2.5 GPW/gp25 family protein compare
ABZR86_RS17605 -0.6 -2.6 hypothetical protein compare
ABZR86_RS02455 -0.6 -1.1 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Dyella japonica UNC79MFTsu3.2

For stress Nalidixic acid sodium salt across organisms