Experiment set3IT039 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Nalidixic acid sodium salt 0.08 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
ABZR86_RS17225 +10.8 39.4 TetR/AcrR family transcriptional regulator compare
ABZR86_RS05860 +9.7 12.2 adenylosuccinate lyase compare
ABZR86_RS05910 +8.7 53.9 cupin domain-containing protein compare
ABZR86_RS21130 +7.1 4.7 PadR family transcriptional regulator compare
ABZR86_RS18780 +6.7 22.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS19235 +5.6 23.8 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS18775 +5.2 20.1 nucleotidyltransferase family protein compare
ABZR86_RS15695 +4.4 10.5 23S ribosomal RNA compare
ABZR86_RS06190 +4.4 2.2 YceD family protein compare
ABZR86_RS09450 +4.3 21.7 winged helix-turn-helix transcriptional regulator compare
ABZR86_RS08860 +4.3 4.0 50S ribosomal protein L9 compare
ABZR86_RS13265 +4.1 6.9 50S ribosomal protein L33 compare
ABZR86_RS19805 +3.4 15.8 HPr(Ser) kinase/phosphatase compare
ABZR86_RS08040 +3.3 24.9 chorismate synthase compare
ABZR86_RS02255 +3.2 8.5 tRNA-Gly compare
ABZR86_RS08435 +3.1 17.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS08430 +2.8 12.1 2-methylaconitate cis-trans isomerase PrpF compare
ABZR86_RS22010 +2.6 14.2 redox-regulated ATPase YchF compare
ABZR86_RS18640 +2.5 18.5 class I fructose-bisphosphate aldolase compare
ABZR86_RS12415 +2.4 8.2 NADP-dependent malic enzyme compare
ABZR86_RS12895 +2.3 11.2 heme o synthase compare
ABZR86_RS07320 +2.3 20.1 endopeptidase La compare
ABZR86_RS18655 +2.1 12.2 transketolase compare
ABZR86_RS17095 +2.1 9.1 protein-disulfide reductase DsbD compare
ABZR86_RS12215 +2.1 11.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS05700 +2.1 7.8 SsrA-binding protein SmpB compare
ABZR86_RS11655 +2.0 9.1 SLC13 family permease compare
ABZR86_RS19795 +2.0 8.4 PTS sugar transporter subunit IIA compare
ABZR86_RS01945 +1.8 3.9 preprotein translocase subunit SecG compare
ABZR86_RS12220 +1.8 1.5 Mpo1-like protein compare
ABZR86_RS12005 +1.7 3.5 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS15260 +1.7 2.0 VOC family protein compare
ABZR86_RS08990 +1.7 7.7 DEAD/DEAH box helicase compare
ABZR86_RS06690 +1.6 7.4 acireductone synthase compare
ABZR86_RS07310 +1.5 7.8 tRNA-Val compare
ABZR86_RS02230 +1.5 5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS12900 +1.4 9.9 heme A synthase compare
ABZR86_RS21730 +1.4 9.2 ribonuclease G compare
ABZR86_RS02395 +1.4 3.8 hypothetical protein compare
ABZR86_RS02210 +1.4 1.3 polyhydroxyalkanoic acid system family protein compare
ABZR86_RS12930 +1.3 9.7 cytochrome c oxidase subunit II compare
ABZR86_RS08440 +1.3 3.8 TerC family protein compare
ABZR86_RS08480 +1.3 5.3 methylisocitrate lyase compare
ABZR86_RS14870 +1.2 2.1 AAA family ATPase compare
ABZR86_RS10480 +1.2 2.9 3-dehydroquinate synthase compare
ABZR86_RS12295 +1.2 2.0 DUF2884 family protein compare
ABZR86_RS12905 +1.2 3.3 hypothetical protein compare
ABZR86_RS20370 +1.2 3.4 alpha/beta hydrolase compare
ABZR86_RS04205 +1.2 1.7 CoA ester lyase compare
ABZR86_RS15390 +1.2 8.9 SDR family oxidoreductase compare
ABZR86_RS05795 +1.2 1.7 hypothetical protein compare
ABZR86_RS08015 +1.2 1.6 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS08630 +1.2 2.5 SDR family NAD(P)-dependent oxidoreductase compare
ABZR86_RS00605 +1.2 1.2 S4 domain-containing protein compare
ABZR86_RS20045 +1.2 2.5 flagella synthesis protein FlgN compare
ABZR86_RS10010 +1.2 9.2 class I SAM-dependent methyltransferase compare
ABZR86_RS19555 +1.1 4.6 fumarate hydratase compare
ABZR86_RS19800 +1.1 5.7 RNase adapter RapZ compare
ABZR86_RS11825 +1.1 1.9 citrate synthase compare
ABZR86_RS02355 +1.1 4.6 hypothetical protein compare
ABZR86_RS10020 +1.1 7.8 CDP-glucose 4,6-dehydratase compare
ABZR86_RS13880 +1.1 0.9 peptide deformylase compare
ABZR86_RS07615 +1.1 4.5 cytochrome o ubiquinol oxidase subunit III compare
ABZR86_RS21285 +1.1 1.6 hypothetical protein compare
ABZR86_RS05205 +1.1 1.0 HigA family addiction module antitoxin compare
ABZR86_RS22075 +1.1 4.2 TlpA disulfide reductase family protein compare
ABZR86_RS07625 +1.1 6.5 ubiquinol oxidase subunit II compare
ABZR86_RS17985 +1.1 3.8 hypothetical protein compare
ABZR86_RS15255 +1.1 9.0 class 1 fructose-bisphosphatase compare
ABZR86_RS10000 +1.1 4.4 NAD(P)-dependent oxidoreductase compare
ABZR86_RS09990 +1.0 7.2 oligosaccharide flippase family protein compare
ABZR86_RS21765 +1.0 1.9 amidase compare
ABZR86_RS00645 +1.0 5.3 FecR domain-containing protein compare
ABZR86_RS14090 +1.0 8.9 hypothetical protein compare
ABZR86_RS06570 +1.0 1.6 ribosome assembly RNA-binding protein YhbY compare
ABZR86_RS12605 +1.0 2.3 thioredoxin TrxA compare
ABZR86_RS16845 +1.0 7.5 ATP-dependent DNA helicase DinG compare
ABZR86_RS12925 +1.0 8.0 cytochrome c oxidase subunit I compare
ABZR86_RS21305 +1.0 4.6 copper chaperone PCu(A)C compare
ABZR86_RS01965 +1.0 3.0 type II toxin-antitoxin system HicB family antitoxin compare
ABZR86_RS07305 +1.0 1.3 tRNA-Asp compare
ABZR86_RS09995 +1.0 3.2 CmcI family methyltransferase compare
ABZR86_RS12410 +0.9 2.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS20640 +0.9 6.4 translational GTPase TypA compare
ABZR86_RS10205 +0.9 5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS02940 +0.9 1.5 PA2169 family four-helix-bundle protein compare
ABZR86_RS19435 +0.9 1.5 GNAT family N-acetyltransferase compare
ABZR86_RS02750 +0.9 5.8 cytochrome c compare
ABZR86_RS21300 +0.9 5.2 SCO family protein compare
ABZR86_RS03315 +0.9 1.8 phage tail protein compare
ABZR86_RS10025 +0.9 5.4 glucose-1-phosphate cytidylyltransferase compare
ABZR86_RS10530 +0.9 1.4 H-NS histone family protein compare
ABZR86_RS16045 +0.9 5.7 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS19450 +0.9 5.7 SET domain-containing protein-lysine N-methyltransferase compare
ABZR86_RS09880 +0.9 6.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR86_RS20150 +0.9 2.6 PilZ domain-containing protein compare
ABZR86_RS02420 +0.9 5.6 hypothetical protein compare
ABZR86_RS07620 +0.9 6.8 cytochrome o ubiquinol oxidase subunit I compare
ABZR86_RS02335 +0.8 4.2 J domain-containing protein compare
ABZR86_RS02410 +0.8 3.2 hypothetical protein compare
ABZR86_RS18760 +0.8 5.1 glycosyltransferase compare
ABZR86_RS17090 +0.8 5.0 TlpA disulfide reductase family protein compare
ABZR86_RS13935 +0.8 2.0 lipid A biosynthesis acyltransferase compare
ABZR86_RS10030 +0.8 5.0 glycosyltransferase family 2 protein compare
ABZR86_RS19005 +0.8 2.1 GFA family protein compare
ABZR86_RS09475 +0.8 2.0 lysozyme inhibitor LprI family protein compare
ABZR86_RS18795 +0.8 1.7 GtrA family protein compare
ABZR86_RS06355 +0.8 3.7 folate-binding protein YgfZ compare
ABZR86_RS08790 +0.8 6.3 TRZ/ATZ family hydrolase compare
ABZR86_RS18620 +0.8 1.4 OsmC family protein compare
ABZR86_RS08150 +0.8 1.2 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR86_RS03435 +0.8 3.5 GTP cyclohydrolase II compare
ABZR86_RS12910 +0.8 6.3 SURF1 family protein compare
ABZR86_RS19065 +0.8 2.0 glutaredoxin family protein compare
ABZR86_RS10355 +0.8 1.0 chemotaxis protein CheW compare
ABZR86_RS17965 +0.8 1.1 hypothetical protein compare
ABZR86_RS14925 +0.8 4.8 YecA family protein compare
ABZR86_RS19585 +0.8 0.8 GNAT family N-acetyltransferase compare
ABZR86_RS03760 +0.8 1.2 hypothetical protein compare
ABZR86_RS00085 +0.8 1.9 hypothetical protein compare
ABZR86_RS05255 +0.8 1.5 nuclear transport factor 2 family protein compare
ABZR86_RS19200 +0.8 5.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS20385 +0.8 2.3 STAS domain-containing protein compare
ABZR86_RS03955 +0.8 5.7 DEAD/DEAH box helicase compare
ABZR86_RS09875 +0.7 5.2 cytochrome bc complex cytochrome b subunit compare
ABZR86_RS03255 +0.7 0.8 addiction module antidote protein compare
ABZR86_RS18535 +0.7 5.2 lipopolysaccharide biosynthesis protein compare
ABZR86_RS22185 +0.7 1.3 NUDIX hydrolase compare
ABZR86_RS00345 +0.7 2.6 antibiotic biosynthesis monooxygenase compare
ABZR86_RS09870 +0.7 4.9 cytochrome c1 compare
ABZR86_RS21710 +0.7 1.5 ribosome biogenesis factor YjgA compare
ABZR86_RS03505 +0.7 1.8 aldolase/citrate lyase family protein compare
ABZR86_RS18435 +0.7 1.3 VOC family protein compare
ABZR86_RS12290 +0.7 3.3 mechanosensitive ion channel domain-containing protein compare
ABZR86_RS07610 +0.7 3.9 cytochrome o ubiquinol oxidase subunit IV compare
ABZR86_RS04355 +0.7 1.6 response regulator transcription factor compare
ABZR86_RS22070 +0.7 1.8 acylphosphatase compare
ABZR86_RS09985 +0.7 5.3 glycosyltransferase compare
ABZR86_RS01315 +0.7 1.8 alpha-hydroxy acid oxidase compare
ABZR86_RS09035 +0.7 2.4 TerC family protein compare
ABZR86_RS20605 +0.7 0.9 FeoA family protein compare
ABZR86_RS02365 +0.7 3.3 prohibitin family protein compare
ABZR86_RS02345 +0.7 3.9 DNA methyltransferase compare
ABZR86_RS08915 +0.7 0.9 hypothetical protein compare
ABZR86_RS00230 +0.7 2.0 hypothetical protein compare
ABZR86_RS05820 +0.7 1.9 GntR family transcriptional regulator compare
ABZR86_RS09245 +0.7 4.5 RNA polymerase-associated protein RapA compare
ABZR86_RS18315 +0.7 2.2 hypothetical protein compare
ABZR86_RS10965 +0.6 4.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ABZR86_RS12940 +0.6 5.5 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABZR86_RS13225 +0.6 2.4 HAD family hydrolase compare
ABZR86_RS21310 +0.6 3.7 cytochrome c oxidase assembly protein compare
ABZR86_RS07965 +0.6 1.6 MarR family transcriptional regulator compare
ABZR86_RS07165 +0.6 4.2 translation elongation factor 4 compare
ABZR86_RS02185 +0.6 3.6 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS08135 +0.6 1.0 hypothetical protein compare
ABZR86_RS03750 +0.6 2.5 hypothetical protein compare
ABZR86_RS08470 +0.6 3.2 hypothetical protein compare
ABZR86_RS18765 +0.6 1.8 dehydrogenase compare
ABZR86_RS05335 +0.6 0.8 hemerythrin domain-containing protein compare
ABZR86_RS14705 +0.6 1.0 GntR family transcriptional regulator compare
ABZR86_RS12920 +0.6 4.3 cytochrome c oxidase subunit 3 compare
ABZR86_RS12820 +0.6 1.4 DUF1328 domain-containing protein compare
ABZR86_RS02400 +0.6 0.7 hypothetical protein compare
ABZR86_RS11275 +0.6 3.0 Co2+/Mg2+ efflux protein ApaG compare
ABZR86_RS02745 +0.6 4.2 cytochrome c compare
ABZR86_RS05000 +0.6 2.2 type II secretion system protein GspK compare
ABZR86_RS18830 +0.6 2.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS12210 +0.6 3.0 c-type cytochrome compare
ABZR86_RS06740 +0.6 1.5 YerC/YecD family TrpR-related protein compare
ABZR86_RS15830 +0.6 3.2 sulfurtransferase compare
ABZR86_RS19480 +0.6 2.4 MoxR family ATPase compare
ABZR86_RS20110 +0.6 0.9 flagellar basal body P-ring protein FlgI compare
ABZR86_RS16310 +0.6 4.1 c-type cytochrome compare
ABZR86_RS10120 +0.6 3.5 TonB-dependent receptor compare
ABZR86_RS12600 +0.6 5.1 DEAD/DEAH box helicase compare
ABZR86_RS13865 +0.6 0.8 DNA topoisomerase I compare
ABZR86_RS10110 +0.6 2.5 ATP-binding protein compare
ABZR86_RS18115 +0.6 3.1 MFS transporter compare
ABZR86_RS03100 +0.6 1.2 transcriptional regulator compare
ABZR86_RS20340 +0.6 0.6 nuclear transport factor 2 family protein compare
ABZR86_RS18805 +0.6 1.2 hypothetical protein compare
ABZR86_RS17085 +0.6 2.8 type II 3-dehydroquinate dehydratase compare
ABZR86_RS00305 +0.6 3.7 deoxyribonuclease V compare
ABZR86_RS08495 +0.6 3.2 alkyl hydroperoxide reductase subunit F compare
ABZR86_RS02950 +0.6 0.9 sigma-54 dependent transcriptional regulator compare
ABZR86_RS02375 +0.6 3.2 recombination-associated protein RdgC compare
ABZR86_RS00285 +0.6 0.6 hypothetical protein compare
ABZR86_RS22245 +0.6 1.3 flagellar hook-length control protein FliK compare
ABZR86_RS02200 +0.6 4.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS19860 +0.5 3.0 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS09575 +0.5 1.5 tRNA-Ala compare
ABZR86_RS02785 +0.5 0.7 hypothetical protein compare
ABZR86_RS18350 +0.5 3.9 tRNA dihydrouridine(20/20a) synthase DusA compare
ABZR86_RS00245 +0.5 1.5 oxidoreductase-like domain-containing protein compare
ABZR86_RS10015 +0.5 2.0 dTDP-4-dehydrorhamnose 3,5-epimerase family protein compare
ABZR86_RS01005 +0.5 1.3 tryptorubin family RiPP precursor compare
ABZR86_RS02380 +0.5 1.6 hypothetical protein compare
ABZR86_RS00545 +0.5 1.6 NADH:flavin oxidoreductase/NADH oxidase compare
ABZR86_RS11280 +0.5 3.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Dyella japonica UNC79MFTsu3.2

For stress Nalidixic acid sodium salt across organisms