Experiment set3IT039 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Nalidixic acid sodium salt 0.08 mg/ml

Group: stress
Media: LB + Nalidixic acid sodium salt (0.08 mg/ml)
Culturing: Dyella79_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.2 generations
By: Adam on 17-May-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1769 D2

Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Dyella japonica UNC79MFTsu3.2

For stress Nalidixic acid sodium salt across organisms

SEED Subsystems

Subsystem #Specific
Multidrug Resistance Efflux Pumps 3
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 3
Fatty Acid Biosynthesis FASII 1
mycolic acid synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 12 3
gondoate biosynthesis (anaerobic) 4 4 1
palmitate biosynthesis III 29 28 7
tetradecanoate biosynthesis (mitochondria) 25 23 6
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 8 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 48 11
fatty acid elongation -- saturated 5 5 1
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 17 4
8-amino-7-oxononanoate biosynthesis IV 5 4 1
cis-vaccenate biosynthesis 5 4 1
superpathway of fatty acid biosynthesis II (plant) 43 38 8
8-amino-7-oxononanoate biosynthesis I 11 10 2
even iso-branched-chain fatty acid biosynthesis 34 30 6
odd iso-branched-chain fatty acid biosynthesis 34 30 6
anteiso-branched-chain fatty acid biosynthesis 34 30 6
(5Z)-dodecenoate biosynthesis I 6 5 1
stearate biosynthesis II (bacteria and plants) 6 5 1
stearate biosynthesis IV 6 4 1
(5Z)-dodecenoate biosynthesis II 6 4 1
petroselinate biosynthesis 6 2 1
streptorubin B biosynthesis 34 20 5
biotin biosynthesis I 15 14 2
superpathway of fatty acid biosynthesis I (E. coli) 16 14 2
2-allylmalonyl-CoA biosynthesis 8 2 1
mycolate biosynthesis 205 25 5
superpathway of mycolate biosynthesis 239 26 5