Experiment set3IT038 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Gentamicin sulfate salt 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_769 -3.9 -7.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1307 -3.2 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1315 -2.9 -9.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2004 -2.8 -3.2 putative membrane protein compare
Pf1N1B4_1679 -2.6 -2.4 Membrane-fusion protein compare
Pf1N1B4_2949 -2.5 -2.1 FIG00956396: hypothetical protein compare
Pf1N1B4_888 -2.2 -6.2 Transglycosylase, Slt family compare
Pf1N1B4_3168 -2.2 -3.9 AmpG permease compare
Pf1N1B4_2106 -2.1 -3.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_875 -2.1 -3.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_652 -2.1 -11.1 Sensory box histidine kinase compare
Pf1N1B4_1661 -2.1 -5.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_958 -2.1 -2.9 Stringent starvation protein B compare
Pf1N1B4_1626 -2.1 -8.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_3559 -2.1 -12.8 Aromatic amino acid transport protein AroP compare
Pf1N1B4_1624 -2.0 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5690 -2.0 -4.6 Putative TEGT family carrier/transport protein compare
Pf1N1B4_3246 -1.9 -4.2 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_2874 -1.8 -2.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2493 -1.7 -3.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2401 -1.7 -1.7 Lipoprotein, putative compare
Pf1N1B4_3508 -1.6 -3.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_1 -1.6 -1.8 Colicin V production protein compare
Pf1N1B4_3143 -1.6 -3.4 RecA protein compare
Pf1N1B4_2283 -1.5 -2.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1636 -1.5 -1.6 FIG00954739: hypothetical protein compare
Pf1N1B4_1581 -1.5 -3.2 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_2609 -1.5 -9.8 Catalase (EC 1.11.1.6) compare
Pf1N1B4_4636 -1.5 -2.3 TPR domain protein in aerotolerance operon compare
Pf1N1B4_617 -1.5 -2.2 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1975 -1.5 -2.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_1695 -1.4 -1.4 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_68 -1.4 -2.9 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_2005 -1.4 -2.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_327 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_4004 -1.3 -2.5 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_5067 -1.3 -3.2 PUTATIVE TRANSFERASE PROTEIN( EC:2.- ) compare
Pf1N1B4_4106 -1.3 -2.8 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_1872 -1.3 -6.3 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_4051 -1.3 -3.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_126 -1.3 -2.4 Pirin compare
Pf1N1B4_4518 -1.3 -3.0 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_1906 -1.3 -3.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3091 -1.3 -3.9 Membrane-associated zinc metalloprotease compare
Pf1N1B4_2621 -1.3 -1.9 PspA/IM30 family protein compare
Pf1N1B4_1584 -1.2 -1.7 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_5498 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_2712 -1.2 -4.1 tRNA-i(6)A37 methylthiotransferase compare
Pf1N1B4_4733 -1.2 -2.8 Fap system putative outer membrane protein compare
Pf1N1B4_1627 -1.2 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3942 -1.2 -4.0 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_3520 -1.2 -3.0 Phosphohistidine phosphatase SixA compare
Pf1N1B4_583 -1.2 -1.6 FIG00957748: hypothetical protein compare
Pf1N1B4_101 -1.2 -2.7 hypothetical protein compare
Pf1N1B4_2297 -1.2 -3.6 FIG00954147: hypothetical protein compare
Pf1N1B4_1615 -1.1 -2.6 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_5995 -1.1 -1.8 Transporter, MFS superfamily compare
Pf1N1B4_2631 -1.1 -4.6 Endonuclease/Exonuclease/phosphatase family protein compare
Pf1N1B4_644 -1.1 -2.0 Cold shock protein CspC compare
Pf1N1B4_5330 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_1844 -1.1 -6.9 Oligopeptidase A (EC 3.4.24.70) compare
Pf1N1B4_3909 -1.1 -2.5 Cell division inhibitor-related protein compare
Pf1N1B4_2147 -1.1 -3.5 Putrescine utilization regulator compare
Pf1N1B4_2060 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_381 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_899 -1.1 -1.5 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2270 -1.1 -3.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_2851 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_5059 -1.1 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_1730 -1.1 -2.5 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_1246 -1.1 -1.6 FIG00954047: hypothetical protein compare
Pf1N1B4_2912 -1.1 -1.9 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4362 -1.1 -3.5 hypothetical protein compare
Pf1N1B4_4603 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_5000 -1.0 -2.4 D-glycerate transporter (predicted) compare
Pf1N1B4_1869 -1.0 -5.1 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_3779 -1.0 -1.9 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_5383 -1.0 -6.0 hypothetical protein compare
Pf1N1B4_5912 -1.0 -3.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4668 -1.0 -3.2 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_3072 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_3119 -1.0 -1.9 Holin compare
Pf1N1B4_591 -1.0 -4.1 Aldose 1-epimerase compare
Pf1N1B4_4946 -1.0 -3.1 putative aminotransferase compare
Pf1N1B4_412 -1.0 -2.0 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_6004 -1.0 -3.3 tgtA5 cluster protein 1 compare
Pf1N1B4_4640 -1.0 -4.2 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_1474 -1.0 -3.2 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_5645 -1.0 -2.2 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_3451 -1.0 -2.9 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_5533 -1.0 -1.9 cobS protein, putative compare
Pf1N1B4_4296 -1.0 -2.8 Histidine transporter, periplasmic histidine-binding protein compare
Pf1N1B4_1235 -1.0 -4.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2282 -1.0 -5.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_883 -1.0 -1.7 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2244 -1.0 -1.5 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_2359 -1.0 -2.6 Chemotaxis signal transduction protein compare
Pf1N1B4_3141 -1.0 -1.2 FIG00959768: hypothetical protein compare
Pf1N1B4_1827 -1.0 -2.9 FIG00953482: hypothetical protein compare
Pf1N1B4_5439 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_3595 -0.9 -1.9 Flagellin protein FlaG compare
Pf1N1B4_1617 -0.9 -5.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5095 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_403 -0.9 -1.8 FIG00965925: hypothetical protein compare
Pf1N1B4_2642 -0.9 -1.5 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_1399 -0.9 -3.0 FIG003573: hypothetical protein compare
Pf1N1B4_5892 -0.9 -2.1 FIG00961753: hypothetical protein compare
Pf1N1B4_2035 -0.9 -3.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_416 -0.9 -3.3 FIG003620: Proteophosphoglycan precursor (Fragment) compare
Pf1N1B4_1060 -0.9 -1.4 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1781 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4765 -0.9 -2.2 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_2823 -0.9 -2.2 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_3543 -0.9 -5.8 Potassium uptake protein TrkH compare
Pf1N1B4_3713 -0.9 -1.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_1159 -0.9 -2.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_2959 -0.9 -3.0 FIG067310: hypothetical protein compare
Pf1N1B4_2014 -0.9 -2.9 Homocysteine S-methyltransferase (EC 2.1.1.10) compare
Pf1N1B4_2150 -0.9 -1.9 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_3892 -0.9 -3.4 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
Pf1N1B4_3446 -0.9 -1.8 Putative GTPases (G3E family) compare
Pf1N1B4_2213 -0.9 -3.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_5680 -0.9 -2.8 DNA polymerase-like protein PA0670 compare
Pf1N1B4_1236 -0.9 -3.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4782 -0.9 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf1N1B4_2037 -0.9 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_1205 -0.9 -4.0 Sulfate permease compare
Pf1N1B4_124 -0.9 -2.0 Mechanosensitive ion channel compare
Pf1N1B4_3214 -0.9 -2.9 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
Pf1N1B4_5588 -0.9 -2.2 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_114 -0.9 -2.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_4669 -0.9 -1.9 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_110 -0.8 -3.2 Queuosine biosynthesis QueD, PTPS-I compare
Pf1N1B4_3065 -0.8 -2.0 FIG00954412: hypothetical protein compare
Pf1N1B4_2048 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_5242 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_1107 -0.8 -2.3 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_2560 -0.8 -3.9 hypothetical protein compare
Pf1N1B4_2105 -0.8 -0.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3775 -0.8 -1.1 FIG00956876: hypothetical protein compare
Pf1N1B4_2241 -0.8 -3.3 Adenylate cyclase (EC 4.6.1.1) compare
Pf1N1B4_1317 -0.8 -2.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_5294 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_1690 -0.8 -2.8 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_3729 -0.8 -1.6 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_1093 -0.8 -2.9 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) compare
Pf1N1B4_2611 -0.8 -6.1 Excinuclease ABC subunit A compare
Pf1N1B4_483 -0.8 -1.8 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4671 -0.8 -1.8 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_3078 -0.8 -1.7 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_730 -0.8 -3.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_3259 -0.8 -2.2 FIG00956006: hypothetical protein compare
Pf1N1B4_2686 -0.8 -3.1 DedA protein compare
Pf1N1B4_1625 -0.8 -2.6 FIG00956267: hypothetical protein compare
Pf1N1B4_5884 -0.8 -1.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_4470 -0.8 -1.5 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_2958 -0.8 -1.1 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_614 -0.8 -1.7 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_3865 -0.8 -2.1 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_649 -0.8 -2.2 Small-conductance mechanosensitive channel compare
Pf1N1B4_3703 -0.8 -1.7 NLP/P60 family protein compare
Pf1N1B4_1234 -0.8 -2.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1388 -0.8 -2.4 Azurin compare
Pf1N1B4_5284 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_3787 -0.8 -2.2 FIG00960829: hypothetical protein compare
Pf1N1B4_3724 -0.8 -3.3 DNA recombination protein RmuC compare
Pf1N1B4_4596 -0.8 -1.5 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_4918 -0.8 -2.0 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_163 -0.8 -1.6 ADP-ribosylglycohydrolase compare
Pf1N1B4_1057 -0.7 -1.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2252 -0.7 -1.5 Organosulfonate utilization protein SsuF compare
Pf1N1B4_882 -0.7 -1.7 carbonic anhydrase, family 3 compare
Pf1N1B4_616 -0.7 -1.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3386 -0.7 -2.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_5917 -0.7 -1.4 Multimeric flavodoxin WrbA compare
Pf1N1B4_1870 -0.7 -1.5 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_224 -0.7 -1.1 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_890 -0.7 -1.8 DNA recombination and repair protein RecO compare
Pf1N1B4_2432 -0.7 -1.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3251 -0.7 -3.6 Putative sugar transport protein compare
Pf1N1B4_1191 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_1511 -0.7 -0.8 FIG027190: Putative transmembrane protein compare
Pf1N1B4_1610 -0.7 -2.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_76 -0.7 -1.9 ATP binding protein compare
Pf1N1B4_4024 -0.7 -1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1614 -0.7 -1.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_4585 -0.7 -1.2 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_2354 -0.7 -2.1 twitching motility protein PilH compare
Pf1N1B4_2739 -0.7 -1.5 acetyltransferase, GNAT family compare
Pf1N1B4_4385 -0.7 -1.7 Gfa-like protein compare
Pf1N1B4_2169 -0.7 -1.4 FIG00953808: hypothetical protein compare
Pf1N1B4_835 -0.7 -1.8 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_4043 -0.7 -2.1 Type II and III secretion system family protein compare
Pf1N1B4_3149 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_5682 -0.7 -1.6 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_4381 -0.7 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_695 -0.7 -1.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_535 -0.7 -2.3 FIG00953341: hypothetical protein compare
Pf1N1B4_5583 -0.7 -2.4 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf1N1B4_5278 -0.7 -0.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Gentamicin sulfate salt in Pseudomonas fluorescens FW300-N1B4

For stress Gentamicin sulfate salt across organisms