Experiment set3IT038 for Methanococcus maripaludis JJ

Compare to:

formate McAA folic acid dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS06860 -6.4 -4.4 hypothetical protein compare
MMJJ_RS00235 -6.2 -22.0 hypothetical protein compare
MMJJ_RS06695 -5.4 -3.7 amidohydrolase compare
MMJJ_RS02090 -5.2 -6.2 tyramine--L-glutamate ligase compare
MMJJ_RS07360 -5.1 -2.8 TIGR00269 family protein compare
MMJJ_RS05070 -4.8 -3.3 DNA primase catalytic subunit PriS compare
MMJJ_RS00570 -4.7 -3.2 ribonuclease P compare
MMJJ_RS04200 -4.7 -9.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06225 -4.7 -3.2 adenosylmethionine decarboxylase compare
MMJJ_RS06855 -4.6 -2.4 DUF2104 domain-containing protein compare
MMJJ_RS01870 -4.6 -3.1 methanogenesis marker 15 protein compare
MMJJ_RS06910 -4.5 -4.3 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06625 -4.5 -3.7 pyruvate synthase subunit PorB compare
MMJJ_RS05450 -4.4 -16.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS00580 -4.4 -3.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03200 -4.4 -3.0 uroporphyrinogen-III synthase compare
MMJJ_RS02045 -4.4 -4.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05445 -4.2 -3.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03270 -4.2 -4.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS03840 -4.2 -4.9 DHH family phosphoesterase compare
MMJJ_RS09375 -4.1 -2.8 hypothetical protein compare
MMJJ_RS03820 -4.1 -5.5 hydrogenase formation protein HypD compare
MMJJ_RS03865 -4.0 -2.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08020 -4.0 -10.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03580 -4.0 -5.3 TIGR00303 family protein compare
MMJJ_RS06875 -4.0 -5.2 hypothetical protein compare
MMJJ_RS05650 -3.9 -4.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05225 -3.9 -1.6 Gar1/Naf1 family protein compare
MMJJ_RS05535 -3.9 -17.5 hypothetical protein compare
MMJJ_RS07665 -3.9 -23.4 formate dehydrogenase subunit alpha compare
MMJJ_RS03785 -3.8 -3.7 hypothetical protein compare
MMJJ_RS06510 -3.8 -4.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS06040 -3.8 -6.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08250 -3.8 -9.5 hydrogenase maturation peptidase HycI compare
MMJJ_RS06725 -3.8 -16.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06390 -3.8 -2.6 NADPH-dependent F420 reductase compare
MMJJ_RS05575 -3.8 -7.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS01750 -3.7 -4.1 ferrous iron transport protein A compare
MMJJ_RS06490 -3.7 -4.6 methanogenesis marker 2 protein compare
MMJJ_RS04685 -3.7 -12.9 carbamoyltransferase HypF compare
MMJJ_RS05260 -3.7 -8.4 ATP-grasp domain-containing protein compare
MMJJ_RS00270 -3.6 -4.4 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS05935 -3.6 -3.3 Era-like GTP-binding protein compare
MMJJ_RS04155 -3.6 -9.0 hypothetical protein compare
MMJJ_RS08625 -3.6 -9.4 magnesium/cobalt transporter CorA compare
MMJJ_RS06840 -3.6 -5.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05930 -3.6 -3.1 cell division protein SepF compare
MMJJ_RS08330 -3.5 -5.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03110 -3.5 -6.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS07670 -3.5 -18.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07655 -3.5 -14.6 hypothetical protein compare
MMJJ_RS04995 -3.5 -8.2 Tfx family DNA-binding protein compare
MMJJ_RS07380 -3.5 -13.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS01935 -3.5 -6.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04485 -3.4 -13.1 riboflavin synthase compare
MMJJ_RS07410 -3.4 -6.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05380 -3.4 -2.1 hypothetical protein compare
MMJJ_RS03670 -3.4 -6.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06915 -3.3 -15.8 helix-turn-helix domain-containing protein compare
MMJJ_RS08005 -3.3 -18.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS02935 -3.3 -3.8 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS00355 -3.3 -4.8 ribonuclease P protein component 4 compare
MMJJ_RS04800 -3.3 -8.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06255 -3.2 -7.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS04730 -3.2 -4.2 tyrosine decarboxylase MfnA compare
MMJJ_RS00520 -3.2 -7.7 PDGLE domain-containing protein compare
MMJJ_RS08080 -3.2 -9.2 TIGR00300 family protein compare
MMJJ_RS04790 -3.1 -4.9 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06485 -3.1 -4.1 phosphoglycerate kinase compare
MMJJ_RS06155 -3.1 -5.9 phosphatidylglycerophosphatase A compare
MMJJ_RS01880 -3.1 -4.3 RlmE family RNA methyltransferase compare
MMJJ_RS00475 -3.1 -3.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03875 -3.1 -6.7 CBS domain-containing protein compare
MMJJ_RS03055 -3.1 -4.9 hypothetical protein compare
MMJJ_RS03615 -3.1 -4.7 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08000 -3.1 -10.2 HesA/MoeB/ThiF family protein compare
MMJJ_RS04675 -3.0 -7.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS08055 -3.0 -7.7 methanogenesis marker 14 protein compare
MMJJ_RS00450 -3.0 -2.8 DUF126 domain-containing protein compare
MMJJ_RS03125 -3.0 -6.8 GMC oxidoreductase compare
MMJJ_RS01565 -3.0 -9.6 TIGR00267 family protein compare
MMJJ_RS03295 -3.0 -15.3 PHP domain-containing protein compare
MMJJ_RS01600 -3.0 -3.8 radical SAM protein compare
MMJJ_RS07430 -3.0 -4.5 ribonuclease VapC compare
MMJJ_RS01755 -3.0 -3.7 ferrous iron transport protein B compare
MMJJ_RS06375 -2.9 -5.3 UbiX family flavin prenyltransferase compare
MMJJ_RS02275 -2.9 -5.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03620 -2.9 -5.3 DUF2097 domain-containing protein compare
MMJJ_RS07945 -2.9 -5.3 4Fe-4S binding protein compare
MMJJ_RS07660 -2.9 -13.6 carbonic anhydrase compare
MMJJ_RS07785 -2.9 -3.9 fumarate reductase subunit A compare
MMJJ_RS05490 -2.9 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS04655 -2.8 -7.9 FAD-dependent oxidoreductase compare
MMJJ_RS03115 -2.8 -5.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS03095 -2.8 -3.5 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08095 -2.8 -6.5 cobyric acid synthase CobQ compare
MMJJ_RS00600 -2.8 -4.1 hydroxymethylbilane synthase compare
MMJJ_RS05065 -2.7 -5.3 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04985 -2.7 -5.4 glutamyl-tRNA reductase compare
MMJJ_RS04520 -2.7 -7.3 coenzyme F430 synthase compare
MMJJ_RS02920 -2.7 -3.7 30S ribosomal protein S27ae compare
MMJJ_RS02040 -2.7 -1.9 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS01690 -2.7 -4.5 methanogenesis marker 12 protein compare
MMJJ_RS07350 -2.7 -4.7 4Fe-4S binding protein compare
MMJJ_RS08660 -2.7 -4.7 acetylornithine transaminase compare
MMJJ_RS08320 -2.7 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06215 -2.7 -5.3 agmatinase compare
MMJJ_RS07705 -2.6 -5.0 GTP-binding protein EngB compare
MMJJ_RS03660 -2.6 -5.4 DUF447 family protein compare
MMJJ_RS09130 -2.6 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS05995 -2.6 -2.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS06785 -2.6 -6.9 RNA ligase partner protein compare
MMJJ_RS00050 -2.6 -13.5 AAA family ATPase compare
MMJJ_RS03065 -2.6 -12.4 CBS domain-containing protein compare
MMJJ_RS00045 -2.6 -15.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03830 -2.5 -10.3 CBS domain-containing protein compare
MMJJ_RS01345 -2.5 -5.2 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05655 -2.5 -6.9 HisA/HisF family protein compare
MMJJ_RS08335 -2.5 -2.7 ABC transporter ATP-binding protein compare
MMJJ_RS00205 -2.5 -6.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05810 -2.5 -6.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03895 -2.5 -3.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS03190 -2.5 -3.9 phosphopyruvate hydratase compare
MMJJ_RS07720 -2.5 -2.9 UPF0058 family protein compare
MMJJ_RS01355 -2.5 -4.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS08340 -2.5 -4.7 archaeoflavoprotein AfpA compare
MMJJ_RS08855 -2.5 -7.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS05620 -2.5 -6.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS00560 -2.4 -3.5 homoisocitrate dehydrogenase compare
MMJJ_RS00065 -2.4 -11.6 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07345 -2.4 -7.1 homocysteine biosynthesis protein compare
MMJJ_RS06250 -2.4 -3.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS06705 -2.4 -5.7 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS07155 -2.4 -9.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00215 -2.4 -3.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS01200 -2.4 -3.4 PRC-barrel domain-containing protein compare
MMJJ_RS08795 -2.4 -3.2 phosphoglucosamine mutase compare
MMJJ_RS00060 -2.4 -18.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00040 -2.4 -9.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS05190 -2.4 -6.8 gamma carbonic anhydrase family protein compare
MMJJ_RS06220 -2.3 -5.3 polyamine aminopropyltransferase compare
MMJJ_RS07995 -2.3 -6.5 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS03150 -2.3 -7.2 2-phospho-L-lactate transferase compare
MMJJ_RS06835 -2.3 -11.9 4Fe-4S binding protein compare
MMJJ_RS00035 -2.3 -15.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS02055 -2.3 -12.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS05295 -2.3 -10.6 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS00070 -2.3 -3.6 CooT family nickel-binding protein compare
MMJJ_RS05155 -2.3 -8.0 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS00075 -2.3 -10.6 AAA family ATPase compare
MMJJ_RS07470 -2.3 -2.9 50S ribosome-binding GTPase compare
MMJJ_RS07640 -2.3 -17.9 cache domain-containing protein compare
MMJJ_RS06180 -2.3 -2.8 tryptophan--tRNA ligase compare
MMJJ_RS04110 -2.2 -5.4 hypothetical protein compare
MMJJ_RS07950 -2.2 -3.7 4Fe-4S binding protein compare
MMJJ_RS03815 -2.2 -2.8 nascent polypeptide-associated complex protein compare
MMJJ_RS07635 -2.2 -11.8 response regulator transcription factor compare
MMJJ_RS08535 -2.2 -3.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS00275 -2.2 -2.9 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03845 -2.2 -3.7 translation initiation factor IF-2 compare
MMJJ_RS01865 -2.2 -8.7 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS01475 -2.2 -2.7 signal recognition particle-docking protein FtsY compare
MMJJ_RS00055 -2.2 -10.3 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS03630 -2.2 -11.8 AMP phosphorylase compare
MMJJ_RS04670 -2.2 -5.8 DUF2117 domain-containing protein compare
MMJJ_RS01415 -2.2 -3.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS00080 -2.2 -11.8 DUF166 domain-containing protein compare
MMJJ_RS06015 -2.1 -11.7 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS09055 -2.1 -11.5 NFACT family protein compare
MMJJ_RS06185 -2.1 -5.0 cobalamin biosynthesis protein compare
MMJJ_RS06730 -2.1 -6.8 ATP-binding cassette domain-containing protein compare
MMJJ_RS07415 -2.1 -3.7 polyprenyl diphosphate synthase compare
MMJJ_RS04980 -2.1 -5.7 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS08065 -2.1 -3.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS08155 -2.1 -4.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06750 -2.1 -3.2 homoaconitase large subunit compare
MMJJ_RS03060 -2.1 -2.7 methanogenesis marker 7 protein compare
MMJJ_RS05610 -2.1 -3.5 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06380 -2.1 -4.7 signal recognition particle protein Srp54 compare
MMJJ_RS07650 -2.1 -15.2 formate/nitrite transporter family protein compare
MMJJ_RS07370 -2.1 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS06805 -2.1 -3.4 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS05360 -2.0 -6.8 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS07725 -2.0 -7.1 DNA primase DnaG compare
MMJJ_RS00530 -2.0 -12.2 cobalt ECF transporter T component CbiQ compare
MMJJ_RS03800 -2.0 -9.3 aldolase compare
MMJJ_RS05375 -2.0 -14.1 radical SAM protein compare
MMJJ_RS03995 -2.0 -5.8 PHP domain-containing protein compare
MMJJ_RS08480 -2.0 -8.2 hydroxyethylthiazole kinase compare
MMJJ_RS05590 -2.0 -2.0 homoserine dehydrogenase compare
MMJJ_RS03005 -2.0 -3.9 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS09175 -2.0 -2.2 anthranilate synthase component I compare
MMJJ_RS01830 -2.0 -3.1 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06175 -2.0 -3.4 DUF1743 domain-containing protein compare
MMJJ_RS03160 -2.0 -13.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS00265 -2.0 -6.7 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS06865 -1.9 -2.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08585 -1.9 -9.2 M42 family metallopeptidase compare
MMJJ_RS07000 -1.9 -1.9 TrkH family potassium uptake protein compare
MMJJ_RS01810 -1.9 -3.1 methyl coenzyme M reductase system, component A2 compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments