Experiment set3IT038 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Tiamulin 2e-04 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS18285 -6.2 -12.0 ABC transporter ATP-binding protein compare
BBR_RS10255 -6.1 -4.2 chromosomal replication initiator protein DnaA compare
BBR_RS10890 -4.9 -13.1 LacI family transcriptional regulator compare
BBR_RS19465 -4.8 -4.8 ribonuclease E/G compare
BBR_RS12545 -4.7 -3.2 DUF4012 domain-containing protein compare
BBR_RS13070 -4.4 -2.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS12235 -4.0 -1.9 hypothetical protein compare
BBR_RS16425 -3.8 -2.6 DUF3071 domain-containing protein compare
BBR_RS14130 -3.7 -2.4 septum formation initiator family protein compare
BBR_RS14240 -3.5 -5.8 1,4-alpha-glucan branching protein GlgB compare
BBR_RS19905 -3.5 -1.6 methionine--tRNA ligase compare
BBR_RS10580 -3.4 -4.1 septation inhibitor protein compare
BBR_RS18565 -3.3 -2.2 CHAP domain-containing protein compare
BBR_RS12370 -3.2 -1.5 cell division protein compare
BBR_RS10625 -3.2 -3.1 FHA domain-containing protein compare
BBR_RS14215 -3.2 -3.7 peptidase compare
BBR_RS16635 -3.1 -2.1 ABC transporter ATP-binding protein compare
BBR_RS20455 -3.1 -6.8 thioredoxin-disulfide reductase compare
BBR_RS11590 -3.0 -1.4 30S ribosomal protein S18 compare
BBR_RS12300 -3.0 -4.1 30S ribosomal protein S16 compare
BBR_RS14870 -3.0 -4.9 histidine phosphatase family protein compare
BBR_RS13805 -3.0 -3.5 hypothetical protein compare
BBR_RS14885 -2.9 -6.4 cyclomaltodextrinase compare
BBR_RS20465 -2.9 -6.4 chromosome partitioning protein compare
BBR_RS16640 -2.8 -3.4 ABC transporter permease compare
BBR_RS16750 -2.8 -1.9 ParA family protein compare
BBR_RS12310 -2.8 -2.6 signal recognition particle protein compare
BBR_RS11540 -2.8 -3.6 DUF1727 domain-containing protein compare
BBR_RS15055 -2.7 -3.9 hypothetical protein compare
BBR_RS10620 -2.7 -4.8 phosphoprotein phosphatase compare
BBR_RS12295 -2.6 -1.7 RNA-binding protein compare
BBR_RS16955 -2.5 -3.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS11720 -2.4 -4.9 DUF2469 domain-containing protein compare
BBR_RS20460 -2.4 -4.0 chromosome partitioning protein ParB compare
BBR_RS17440 -2.4 -1.7 DUF3027 domain-containing protein compare
BBR_RS15455 -2.3 -2.7 orotate phosphoribosyltransferase compare
BBR_RS16220 -2.3 -1.5 DNA cytosine methyltransferase compare
BBR_RS15080 -2.3 -3.4 chorismate synthase compare
BBR_RS18050 -2.3 -3.1 threonylcarbamoyl-AMP synthase compare
BBR_RS19760 -2.3 -2.1 polysaccharide ABC transporter ATPase compare
BBR_RS18725 -2.3 -2.7 ribonuclease HI compare
BBR_RS14265 -2.2 -5.1 Solute-binding protein of ABC transporter system for metals compare
BBR_RS14200 -2.2 -4.8 WhiB family transcriptional regulator compare
BBR_RS19190 -2.2 -7.0 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS14205 -2.2 -2.5 hypothetical protein compare
BBR_RS21015 -2.2 -1.7 hypothetical protein compare
BBR_RS12590 -2.1 -3.1 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS12460 -2.1 -9.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS12045 -2.1 -4.7 hypothetical protein compare
BBR_RS14230 -2.1 -3.4 HAMP domain-containing histidine kinase compare
BBR_RS13370 -2.0 -2.3 phosphoribosylamine--glycine ligase compare
BBR_RS11675 -2.0 -1.9 hypothetical protein compare
BBR_RS17135 -1.9 -1.3 RluA family pseudouridine synthase compare
BBR_RS13035 -1.9 -1.3 ABC transporter permease compare
BBR_RS16905 -1.9 -4.7 hypothetical protein compare
BBR_RS13640 -1.9 -4.9 orotidine-5'-phosphate decarboxylase compare
BBR_RS11470 -1.9 -1.7 6-phosphogluconolactonase compare
BBR_RS13750 -1.8 -1.7 DivIVA domain-containing protein compare
BBR_RS18795 -1.8 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS13630 -1.8 -4.7 carbamoyl-phosphate synthase small subunit compare
BBR_RS14625 -1.8 -6.7 pyrroline-5-carboxylate reductase compare
BBR_RS15090 -1.8 -1.5 type II 3-dehydroquinate dehydratase compare
BBR_RS13030 -1.8 -1.2 cell division ATP-binding protein FtsE compare
BBR_RS13635 -1.8 -6.7 carbamoyl-phosphate synthase large subunit compare
BBR_RS14330 -1.8 -1.6 glycogen debranching enzyme GlgX compare
BBR_RS18745 -1.7 -1.2 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS10940 -1.7 -9.4 DedA family protein compare
BBR_RS19740 -1.7 -12.5 DUF2142 domain-containing protein compare
BBR_RS16675 -1.7 -3.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS17395 -1.7 -8.1 DUF349 domain-containing protein compare
BBR_RS18180 -1.6 -7.7 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS19915 -1.6 -8.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
BBR_RS15805 -1.6 -4.8 prolipoprotein diacylglyceryl transferase compare
BBR_RS10570 -1.6 -4.9 hypothetical protein compare
BBR_RS16625 -1.6 -3.7 DUF3710 domain-containing protein compare
BBR_RS13305 -1.5 -4.6 transcriptional repressor compare
BBR_RS19125 -1.5 -5.9 hypothetical protein compare
BBR_RS12365 -1.5 -5.0 DUF177 domain-containing protein compare
BBR_RS21170 -1.5 -7.3 membrane protein insertion efficiency factor YidD compare
BBR_RS13490 -1.5 -1.5 30S ribosomal protein S7 compare
BBR_RS11950 -1.4 -3.7 tRNA-Tyr compare
BBR_RS16430 -1.4 -3.0 nucleotide pyrophosphatase compare
BBR_RS18735 -1.4 -6.0 hypothetical protein compare
BBR_RS14495 -1.4 -2.7 trigger factor compare
BBR_RS14585 -1.4 -2.3 hypothetical protein compare
BBR_RS18690 -1.4 -5.1 diacylglycerol kinase compare
BBR_RS19815 -1.3 -10.5 ABC transporter permease compare
BBR_RS14370 -1.3 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS19260 -1.3 -9.7 hypothetical protein compare
BBR_RS19070 -1.3 -1.0 50S ribosomal protein L33 compare
BBR_RS19820 -1.3 -10.0 ATP-binding protein of ABC transporter system compare
BBR_RS11185 -1.3 -2.6 type I DNA topoisomerase compare
BBR_RS15655 -1.3 -3.4 Holliday junction branch migration protein RuvA compare
BBR_RS14190 -1.3 -5.8 transcriptional regulator compare
BBR_RS11805 -1.3 -5.8 hypothetical protein compare
BBR_RS16950 -1.3 -1.2 hypothetical protein compare
BBR_RS15435 -1.2 -2.7 dihydroorotase compare
BBR_RS16960 -1.2 -1.9 transcriptional regulator MraZ compare
BBR_RS19375 -1.2 -1.4 acyl-CoA carboxylase subunit beta compare
BBR_RS16275 -1.2 -1.5 leucine--tRNA ligase compare
BBR_RS12980 -1.2 -7.7 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS14260 -1.2 -1.5 ABC transporter ATP-binding protein compare
BBR_RS15130 -1.2 -2.1 metal-sulfur cluster assembly factor compare
BBR_RS10725 -1.2 -10.0 Lead, cadmium, zinc and mercury transporting ATPase compare
BBR_RS19100 -1.2 -8.3 N-acetyltransferase compare
BBR_RS12975 -1.2 -7.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15070 -1.2 -2.8 endolytic transglycosylase MltG compare
BBR_RS13040 -1.1 -0.8 CHAP domain-containing protein compare
BBR_RS19115 -1.1 -1.9 hypothetical protein compare
BBR_RS11770 -1.1 -3.6 chorismate mutase compare
BBR_RS18990 -1.1 -2.0 AbrB family transcriptional regulator compare
BBR_RS18715 -1.1 -6.4 transcriptional regulator compare
BBR_RS15845 -1.1 -0.9 hypothetical protein compare
BBR_RS19155 -1.1 -4.8 phosphate ABC transporter, permease protein PstA compare
BBR_RS19540 -1.1 -1.3 homoserine dehydrogenase compare
BBR_RS17375 -1.1 -4.8 amino acid ABC transporter ATP-binding protein compare
BBR_RS13375 -1.1 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BBR_RS19095 -1.1 -6.8 magnesium transporter compare
BBR_RS15660 -1.0 -2.6 Holliday junction branch migration DNA helicase RuvB compare
BBR_RS11835 -1.0 -4.5 ribbon-helix-helix protein, CopG family compare
BBR_RS14045 -1.0 -4.2 GntR family transcriptional regulator compare
BBR_RS14280 -1.0 -2.3 dephospho-CoA kinase compare
BBR_RS13450 -1.0 -2.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS18635 -1.0 -3.2 PspC domain-containing protein compare
BBR_RS12140 -1.0 -5.6 LacI family transcriptional regulator compare
BBR_RS12810 -0.9 -5.0 hypothetical protein compare
BBR_RS19290 -0.9 -3.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
BBR_RS17505 -0.9 -4.8 VWA domain-containing protein compare
BBR_RS18575 -0.9 -2.4 hypothetical protein compare
BBR_RS12305 -0.9 -3.7 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS13735 -0.9 -0.9 Lon protease compare
BBR_RS19120 -0.9 -4.1 helicase compare
BBR_RS19645 -0.9 -4.1 RNA degradosome polyphosphate kinase compare
BBR_RS19450 -0.9 -0.7 GTPase ObgE compare
BBR_RS17495 -0.9 -4.7 DUF58 domain-containing protein compare
BBR_RS13845 -0.9 -4.6 dipeptidase compare
BBR_RS17490 -0.9 -5.1 MoxR family ATPase compare
BBR_RS12840 -0.9 -4.6 DUF4916 domain-containing protein compare
BBR_RS14475 -0.8 -4.7 formate C-acetyltransferase compare
BBR_RS21100 -0.8 -1.7 hypothetical protein compare
BBR_RS18750 -0.8 -5.0 pseudouridine synthase compare
BBR_RS16985 -0.8 -2.4 transcriptional repressor LexA compare
BBR_RS20830 -0.8 -2.3 hypothetical protein compare
BBR_RS12500 -0.8 -0.7 sugar ABC transporter permease compare
BBR_RS18140 -0.8 -0.9 tRNA-Asp compare
BBR_RS18045 -0.8 -0.8 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BBR_RS15760 -0.8 -2.8 MerR family transcriptional regulator compare
BBR_RS12175 -0.8 -4.7 TetR/AcrR family transcriptional regulator compare
BBR_RS10900 -0.8 -0.8 molecular chaperone DnaK compare
BBR_RS17515 -0.8 -3.3 hypothetical protein compare
BBR_RS17365 -0.8 -2.4 ABC transporter permease compare
BBR_RS12375 -0.8 -0.9 pantetheine-phosphate adenylyltransferase compare
BBR_RS14210 -0.8 -0.5 hypothetical protein compare
BBR_RS16655 -0.8 -2.4 tyrosine recombinase XerC compare
BBR_RS11175 -0.8 -5.7 penicillin-binding protein compare
BBR_RS11515 -0.8 -5.9 ammonium transporter compare
BBR_RS17370 -0.8 -3.3 ABC transporter substrate-binding protein compare
BBR_RS15210 -0.7 -3.8 branched-chain amino acid aminotransferase compare
BBR_RS18160 -0.7 -4.6 DUF3180 domain-containing protein compare
BBR_RS14715 -0.7 -1.3 XRE family transcriptional regulator compare
BBR_RS10265 -0.7 -4.3 DNA replication and repair protein RecF compare
BBR_RS12605 -0.7 -1.8 glycosyltransferase family 2 protein compare
BBR_RS13910 -0.7 -0.8 arginine repressor compare
BBR_RS16755 -0.7 -2.6 site-specific tyrosine recombinase XerD compare
BBR_RS18170 -0.7 -1.4 dihydropteroate synthase compare
BBR_RS19755 -0.7 -4.4 glycosyl transferase compare
BBR_RS18220 -0.7 -4.7 glycosyltransferase family 2 protein compare
BBR_RS12055 -0.7 -4.7 thioredoxin compare
BBR_RS17510 -0.7 -3.4 VWA domain-containing protein compare
BBR_RS15440 -0.7 -2.3 orotidine-5'-phosphate decarboxylase compare
BBR_RS16870 -0.7 -3.2 ROK family protein compare
BBR_RS11510 -0.7 -1.4 signal recognition particle-docking protein FtsY compare
BBR_RS13455 -0.7 -1.6 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS20685 -0.7 -2.4 hypothetical protein compare
BBR_RS15180 -0.7 -3.6 long-chain fatty acid--CoA ligase compare
BBR_RS16245 -0.7 -1.0 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS13110 -0.7 -3.3 type III pantothenate kinase compare
BBR_RS15950 -0.7 -3.0 ABC transporter ATP-binding protein compare
BBR_RS16610 -0.6 -2.3 hypothetical protein compare
BBR_RS15520 -0.6 -1.6 shikimate 5-dehydrogenase compare
BBR_RS10905 -0.6 -2.5 nucleotide exchange factor GrpE compare
BBR_RS16255 -0.6 -1.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS12785 -0.6 -1.2 transcriptional regulator compare
BBR_RS10285 -0.6 -1.1 membrane protein compare
BBR_RS10915 -0.6 -2.2 MerR family DNA-binding transcriptional regulator compare
BBR_RS20475 -0.6 -5.1 KH domain-containing protein compare
BBR_RS15895 -0.6 -2.2 hypothetical protein compare
BBR_RS14780 -0.6 -2.5 XRE family transcriptional regulator compare
BBR_RS16965 -0.6 -0.4 ATP-dependent DNA helicase compare
BBR_RS12470 -0.6 -4.9 long-chain fatty acid--CoA ligase compare
BBR_RS13300 -0.6 -0.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS16530 -0.6 -2.5 recombinase RecA compare
BBR_RS13980 -0.6 -2.8 HD domain-containing protein compare
BBR_RS13830 -0.6 -0.5 DUF4191 domain-containing protein compare
BBR_RS20420 -0.6 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS13435 -0.6 -3.8 hypothetical protein compare
BBR_RS20825 -0.6 -1.3 hypothetical protein compare
BBR_RS10990 -0.6 -2.9 recombination protein RecR compare
BBR_RS10615 -0.6 -2.5 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS17500 -0.6 -2.7 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Tiamulin in Bifidobacterium breve UCC2003

For stress Tiamulin across organisms