Experiment set3IT037 for Sinorhizobium meliloti 1021

Compare to:

LB with copper (II) chloride dihydrate 1 mM

200 most detrimental genes:

  gene name fitness t score description  
SMc00067 +4.2 26.9 outer-membranne lipoprotein compare
SMc04454 +3.7 15.8 ABC transporter ATP-binding protein compare
SMc02713 +3.6 5.1 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc01858 +3.5 4.2 S-adenosyl-methyltransferase MraW compare
SMc02714 +3.0 4.2 hypothetical protein compare
SMc02112 +2.8 13.4 hypothetical protein compare
SMc01769 +2.8 18.4 hypothetical protein compare
SMc02367 +2.8 16.0 sensor histidine kinase transmembrane protein compare
SMc02366 +2.7 19.1 transcriptional regulator compare
SMc02058 +2.5 5.4 YAJC protein compare
SMc03069 +2.5 5.4 6-phosphogluconolactonase compare
SMc00150 +2.5 21.9 hypothetical protein compare
SMc00070 +2.3 6.0 signal peptide protein compare
SMc02434 +2.3 3.8 hypothetical protein compare
SM_b20613 +2.1 9.1 C4-dicarboxylate transport transcriptional regulator compare
SMc00427 +2.1 4.1 peptide chain release factor RF-3 protein compare
SMc00355 +2.1 6.7 hypothetical protein compare
SMc00622 +2.1 8.1 ribonuclease D protein compare
SM_b21516 +2.0 7.4 hypothetical protein compare
SMc00194 +2.0 4.7 hypothetical protein compare
SM_b20143 +1.9 1.5 oligopeptide ABC transporter permease compare
SMc02435 +1.9 2.8 methyltransferase compare
SMc01716 +1.9 9.7 sensor histidine kinase transmembrane protein compare
SMc02636 +1.8 2.9 hypothetical protein compare
SMc02901 +1.8 1.3 hypothetical protein compare
SMc01222 +1.8 7.1 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02365 +1.8 5.4 protease precursor protein compare
SMc00802 +1.8 1.5 hypothetical protein compare
SMc00495 +1.7 4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SM_b21253 +1.7 6.5 hypothetical protein compare
SMc01613 +1.7 4.7 ribose-5-phosphate isomerase B compare
SMc04382 +1.7 14.9 beta-(1,2)-glucan production associated transmembrane protein compare
SMc04001 +1.7 1.5 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc03855 +1.6 3.2 hypothetical protein compare
SMa1921 +1.6 3.0 hypothetical protein compare
SM_b21491 +1.6 6.2 hypothetical protein compare
SMc01099 +1.6 3.1 tRNA pseudouridine synthase A compare
SMc03899 +1.6 1.2 hypothetical protein compare
SMc03900 +1.5 11.0 cyclic beta-1,2-glucan ABc transporter compare
SMa0126 +1.5 0.9 CspA8 Cold shock family protein compare
SMc00838 +1.5 5.7 hypothetical protein compare
SMc01472 +1.5 1.3 50S ribosomal protein L11 methyltransferase compare
SMc02614 +1.5 2.4 hypothetical protein compare
SMc02036 +1.4 3.2 transcriptional regulator compare
SMc02909 +1.4 2.0 transglycosylase transmembrane protein compare
SM_b20948 +1.4 1.4 glucosyltransferase compare
SMc01223 +1.4 1.2 transcriptional regulator compare
SMc00351 +1.4 1.7 hypothetical protein compare
SMa0882 +1.4 1.6 hypothetical protein compare
SMc00352 +1.4 1.0 acetyltransferase compare
SMc00565 +1.4 1.2 50S ribosomal protein L9 compare
SM_b21084 +1.4 2.1 hypothetical protein compare
SMc00648 +1.3 5.1 hypothetical protein compare
SMc03996 +1.3 3.1 thiamine-phosphate pyrophosphorylase compare
SMa0326 +1.3 1.8 short chain alcohol dehydrogenase-related dehydrogenase compare
SMc02978 +1.3 3.5 hypothetical protein compare
SMc01440 +1.3 6.9 hydrolase serine protease transmembrane protein compare
SMc00191 +1.3 1.7 hypothetical protein compare
SM_b21266 +1.3 3.1 hypothetical protein compare
SMc00877 +1.3 7.8 transcriptional regulator compare
SMc02121 +1.3 0.9 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc02449 +1.3 2.3 acetyltransferase compare
SMc02384 +1.2 5.1 glycosyltransferase transmembrane protein compare
SM_b20261 +1.2 2.3 malate dehydrogenase compare
SMc03111 +1.2 4.9 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc04182 +1.2 1.5 hypothetical protein compare
SMc00482 +1.2 5.1 hypothetical protein compare
SMc01622 +1.2 3.5 oxidoreductase compare
SMc00804 +1.2 1.2 hypothetical protein compare
SMc01929 +1.1 2.2 hypothetical protein compare
SMc02659 +1.1 3.3 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SM_b20684 +1.1 7.4 hypothetical protein compare
SMc02864 +1.1 1.8 molybdopterin biosynthesis protein MoeB compare
SM_b21256 +1.1 5.5 nucleotide sugar oxidase compare
SMc03839 +1.1 0.9 hypothetical protein compare
SMc04090 +1.1 1.7 sun protein compare
SMc02383 +1.1 5.9 hypothetical protein compare
SM_b21252 +1.1 6.8 glycosyltransferase compare
SM_b20562 +1.1 5.7 hypothetical protein compare
SMc01428 +1.1 1.6 cold shock transcription regulator protein compare
SMc01441 +1.1 3.6 membrane bound protease compare
SMc00241 +1.1 1.4 transcriptional regulator compare
SMa0754 +1.1 1.7 hypothetical protein compare
SMc04315 +1.1 3.0 transcriptional regulator compare
SMc01220 +1.1 2.7 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc04088 +1.0 4.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SM_b21265 +1.0 5.1 glycosyltransferase compare
SMc00012 +1.0 0.8 cytochrome C oxidase assembly protein compare
SMc00455 +1.0 1.9 hypothetical protein compare
SMc04220 +1.0 0.9 transcriptional regulator compare
SMc01186 +1.0 2.0 hypothetical protein compare
SMc00187 +1.0 1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SM_b20226 +1.0 1.3 hypothetical protein compare
SMc02649 +1.0 2.1 arsenate reductase compare
SMc02084 +1.0 0.7 biopolymer transport transmembrane protein compare
SMc00361 +1.0 1.6 hypothetical protein compare
SMc02229 +1.0 5.3 acyl-CoA dehydrogenase compare
SMc04209 +1.0 4.3 hypothetical protein compare
SMc03008 +1.0 0.9 chemotaxis protein compare
SMa1562 +1.0 3.3 Pilus assembly protein compare
SM_b21024 +1.0 2.9 hypothetical protein compare
SMc01907 +1.0 6.1 hypothetical protein compare
SMc05001 +1.0 2.0 hypothetical protein compare
SM_b21261 +1.0 6.6 mureinpeptideoligopeptide ABC transporter substrate-binding protein precursor compare
SMc02658 +1.0 1.2 hypothetical protein compare
SMc00143 +1.0 1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc02844 +1.0 0.9 transcriptional regulator compare
SM_b21225 +1.0 2.1 inositol monophosphatase compare
SMc03979 +1.0 1.3 glyceraldehyde-3-phosphate dehydrogenase compare
SMc02765 +1.0 4.9 tryptophan synthase subunit alpha compare
SMc01669 +1.0 2.4 enoyl-CoA hydratase compare
SMc03880 +0.9 4.8 hypothetical protein compare
SMc00618 +0.9 5.8 polyphosphate kinase compare
SMc00344 +0.9 1.9 hypothetical protein compare
SMc02032 +0.9 2.6 ABC transporter ATP-binding protein compare
SMc02057 +0.9 3.6 preprotein translocase subunit SecD/SecF compare
SMc02615 +0.9 1.3 signal peptide protein compare
SM_b20293 +0.9 0.9 hypothetical protein compare
SMc01430 +0.9 3.5 acetolactate synthase 3 regulatory subunit compare
SMc04000 +0.9 2.7 hypothetical protein compare
SMc00061 +0.9 3.3 hypothetical protein compare
SMc01221 +0.9 5.5 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00494 +0.9 1.0 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02980 +0.9 0.9 hypothetical protein compare
SMc01930 +0.9 1.3 hypothetical protein compare
SM_b20953 +0.9 0.8 hypothetical protein compare
SM_b20519 +0.9 1.1 hypothetical protein compare
SMc02164 +0.9 1.4 fructokinase compare
SM_b20343 +0.9 1.9 isoquinoline 1-oxidoreductase compare
SMc00579 +0.9 2.4 dimethyladenosine transferase compare
SMc00093 +0.9 5.3 choline dehydrogenase compare
SMc02055 +0.9 1.3 phytoene synthase compare
SM_b21040 +0.9 1.7 oligopeptidemurein peptide ABC transporter ATP-binding protein compare
SM_b20935 +0.9 2.3 transcriptional regulator compare
SMc00790 +0.9 4.0 peptide ABC transporter ATP-binding protein compare
SMa1201 +0.9 1.2 hypothetical protein compare
SM_b20350 +0.9 1.8 hypothetical protein compare
SMc00280 +0.9 2.1 hypothetical protein compare
SM_b21087 +0.9 1.6 conjugal transfer protein compare
SMc03931 +0.9 5.6 sarcosine oxidase subunit alpha compare
SMc00356 +0.9 2.9 lysyl-tRNA synthetase compare
SMc03930 +0.9 0.9 sarcosine oxidase subunit gamma compare
SMc03835 +0.9 1.3 2'-5' RNA ligase compare
SM_b20286 +0.8 2.8 hypothetical protein compare
SM_b20003 +0.8 1.7 pyrroline-5-carboxylate reductase compare
SMc01933 +0.8 0.5 hypothetical protein compare
SMa0123 +0.8 2.7 hypothetical protein compare
SMc00605 +0.8 1.0 hypothetical protein compare
SMc03066 +0.8 0.6 hypothetical protein compare
SMa0431 +0.8 0.9 hypothetical protein compare
SM_b21417 +0.8 3.0 CDP-glucose 4,6-dehydratase compare
SMc01698 +0.8 4.0 oxidoreductase compare
SM_b21171 +0.8 2.9 enzyme protein compare
SMc02319 +0.8 2.3 hypothetical protein compare
SMc03123 +0.8 5.4 transcriptional regulator compare
SM_b20725 +0.8 0.6 hypothetical protein compare
SMc00801 +0.8 2.1 hypothetical protein compare
SMc00288 +0.8 2.7 signal peptide protein compare
SM_b20255 +0.8 2.0 hypothetical protein compare
SMc01241 +0.8 1.1 hypothetical protein compare
SMc00976 +0.8 1.0 enoyl-CoA hydratase compare
SMc01239 +0.8 2.0 hypothetical protein compare
SMc03181 +0.8 3.3 monovalent cation/H+ antiporter subunit D compare
SMc05014 +0.8 2.6 recombinase compare
SMa0797 +0.8 1.3 hypothetical protein compare
SMc00353 +0.8 1.1 transmembrane protein compare
SMc02780 +0.8 1.4 succinate-semialdehyde dehydrogenase [NADP+] protein compare
SM_b20602 +0.8 1.4 branched-chain amino acid ABC transporter ATP-binding protein compare
SMc00789 +0.8 2.7 peptide ABC transporter ATP-binding protein compare
SMc02497 +0.8 0.8 hypothetical protein compare
SMc03961 +0.8 2.5 sulfolipid (UDP-sulfoquinovose) biosynthesis protein compare
SMc01454 +0.8 3.5 hypothetical protein compare
SMc02845 +0.8 1.8 antibiotic resistance protein compare
SMc02220 +0.8 2.4 hypothetical protein compare
SMc04043 +0.8 2.9 hypothetical protein compare
SMc01203 +0.8 1.9 hypothetical protein compare
SMa0886 +0.8 1.0 hypothetical protein compare
SMa0222 +0.8 1.0 GntR family transcriptional regulator compare
SMc04094 +0.8 1.0 hypothetical protein compare
SM_b21397 +0.8 1.5 hypothetical protein compare
SM_b20834 +0.8 3.8 surface saccharide synthesis protein compare
SMc01107 +0.8 2.8 hypothetical protein compare
SMc02893 +0.8 2.0 transcriptional regulator compare
SMc02561 +0.8 0.9 hypothetical protein compare
SMa0838 +0.8 1.1 SyrA protein involved in EPS production compare
SM_b20471 +0.8 1.9 hypothetical protein compare
SMc02565 +0.8 3.0 hypothetical protein compare
SMc00458 +0.8 5.3 transcriptional regulator compare
SMc01427 +0.8 0.8 hypothetical protein compare
SMc02637 +0.8 2.1 hypothetical protein compare
SMc02558 +0.8 2.0 hypothetical protein compare
SMc03863 +0.8 1.5 50S ribosomal protein L19 compare
SMc00505 +0.8 0.5 hypothetical protein compare
SM_b21579 +0.8 2.2 MerR family transcriptional regulator compare
SMa0851 +0.8 1.0 NodH sulfotransferase compare
SMa0734 +0.8 0.7 hypothetical protein compare
SMc00761 +0.8 3.5 oxidoreductase compare
SMc00513 +0.8 2.4 amino acid-binding periplasmic protein compare
SMc01799 +0.8 1.4 signal peptide protein compare
SMc02554 +0.8 1.7 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress copper (II) chloride dihydrate in Sinorhizobium meliloti 1021

For stress copper (II) chloride dihydrate across organisms