Experiment set3IT036 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Nalidixic acid sodium salt 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2005 -4.3 -2.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2885 -3.4 -5.1 Paraquat-inducible protein A compare
Pf1N1B4_1468 -3.2 -14.5 InaA protein compare
Pf1N1B4_1469 -3.1 -16.1 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_3093 -3.0 -2.3 Outer membrane protein H precursor compare
Pf1N1B4_2886 -2.9 -10.0 Paraquat-inducible protein B compare
Pf1N1B4_1441 -2.9 -13.4 Putative esterase, FIGfam005057 compare
Pf1N1B4_1641 -2.8 -10.8 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf1N1B4_3833 -2.8 -9.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3246 -2.6 -4.8 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_3817 -2.5 -5.6 FIG008443: hypothetical protein compare
Pf1N1B4_2912 -2.5 -2.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1462 -2.4 -13.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2917 -2.4 -8.8 FIG140336: TPR domain protein compare
Pf1N1B4_3667 -2.4 -8.4 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_1870 -2.4 -4.1 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1869 -2.3 -8.0 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_1619 -2.3 -9.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3668 -2.3 -7.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf1N1B4_1008 -2.3 -2.1 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_3143 -2.1 -3.3 RecA protein compare
Pf1N1B4_1234 -2.1 -4.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1544 -2.0 -7.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5330 -2.0 -2.3 hypothetical protein compare
Pf1N1B4_617 -1.9 -2.3 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_4531 -1.9 -2.7 FIG01221261: hypothetical protein compare
Pf1N1B4_3166 -1.9 -9.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1180 -1.9 -2.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2209 -1.9 -5.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1781 -1.9 -2.7 hypothetical protein compare
Pf1N1B4_1872 -1.8 -7.5 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_2035 -1.8 -5.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2884 -1.8 -4.6 Paraquat-inducible protein A compare
Pf1N1B4_3559 -1.8 -11.0 Aromatic amino acid transport protein AroP compare
Pf1N1B4_6041 -1.8 -2.7 Carbon storage regulator compare
Pf1N1B4_389 -1.7 -5.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_974 -1.7 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3816 -1.7 -6.2 FIG139976: hypothetical protein compare
Pf1N1B4_388 -1.7 -5.9 OmpA family protein compare
Pf1N1B4_3909 -1.7 -3.1 Cell division inhibitor-related protein compare
Pf1N1B4_2037 -1.6 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_3390 -1.6 -3.3 RNA polymerase sigma factor RpoE compare
Pf1N1B4_2568 -1.6 -2.7 Translation elongation factor Tu compare
Pf1N1B4_126 -1.6 -2.9 Pirin compare
Pf1N1B4_4372 -1.6 -2.5 Galactitol utilization operon repressor compare
Pf1N1B4_844 -1.5 -4.3 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_2436 -1.5 -4.5 FIG00953563: hypothetical protein compare
Pf1N1B4_1617 -1.5 -7.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5576 -1.5 -3.1 hypothetical protein compare
Pf1N1B4_2177 -1.5 -1.5 FIG00953342: hypothetical protein compare
Pf1N1B4_695 -1.5 -2.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1317 -1.5 -2.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_644 -1.5 -2.4 Cold shock protein CspC compare
Pf1N1B4_4744 -1.5 -2.8 Transcriptional regulator, LysR family compare
Pf1N1B4_1236 -1.4 -5.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2171 -1.4 -3.1 Tyrosine recombinase XerC compare
Pf1N1B4_2856 -1.4 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3713 -1.4 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3483 -1.4 -4.3 Transcriptional regulatory protein PhoP compare
Pf1N1B4_4621 -1.4 -2.2 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_932 -1.4 -1.2 FIG00963370: hypothetical protein compare
Pf1N1B4_2432 -1.4 -2.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3595 -1.3 -2.2 Flagellin protein FlaG compare
Pf1N1B4_1906 -1.3 -3.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2674 -1.3 -2.0 hypothetical protein compare
Pf1N1B4_35 -1.3 -2.1 hypothetical protein compare
Pf1N1B4_1235 -1.3 -4.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_3011 -1.2 -2.2 Tyrosine recombinase XerD compare
Pf1N1B4_3363 -1.2 -5.1 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_3815 -1.2 -4.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_3134 -1.2 -2.2 probable tail fiber assembly-like protein compare
Pf1N1B4_3918 -1.2 -3.3 Thiamin biosynthesis lipoprotein ApbE compare
Pf1N1B4_4882 -1.2 -4.2 Transcriptional regulator MexT compare
Pf1N1B4_5829 -1.2 -1.8 FIG005107: hypothetical protein compare
Pf1N1B4_1871 -1.2 -4.1 Zinc uptake regulation protein ZUR compare
Pf1N1B4_890 -1.2 -2.3 DNA recombination and repair protein RecO compare
Pf1N1B4_1036 -1.2 -4.2 Signal transduction histidine kinase compare
Pf1N1B4_5827 -1.1 -2.9 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_240 -1.1 -2.0 Transcriptional regulators compare
Pf1N1B4_345 -1.1 -1.5 Integration host factor beta subunit compare
Pf1N1B4_13 -1.1 -2.3 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2106 -1.1 -2.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_5709 -1.1 -2.8 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_4518 -1.1 -2.4 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_2874 -1.1 -1.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_629 -1.1 -1.7 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_3309 -1.1 -4.9 Uracil-DNA glycosylase, family 1 compare
Pf1N1B4_5393 -1.1 -1.4 hypothetical protein compare
Pf1N1B4_3764 -1.1 -2.4 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_1307 -1.1 -1.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5822 -1.1 -4.2 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B compare
Pf1N1B4_3408 -1.1 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_5306 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_2105 -1.1 -1.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4352 -1.1 -2.5 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_1671 -1.1 -2.5 FIG00954962: hypothetical protein compare
Pf1N1B4_4024 -1.1 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3364 -1.1 -1.7 Cyn operon transcriptional activator compare
Pf1N1B4_4985 -1.1 -3.9 putative exported protein compare
Pf1N1B4_2114 -1.1 -4.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3985 -1.0 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_5077 -1.0 -1.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_5311 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_2453 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_936 -1.0 -5.6 GGDEF domain protein compare
Pf1N1B4_4448 -1.0 -1.8 COGs COG2343 compare
Pf1N1B4_4765 -1.0 -2.0 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_3906 -1.0 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_263 -1.0 -1.7 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf1N1B4_3831 -1.0 -4.6 CmpX compare
Pf1N1B4_2096 -1.0 -2.1 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_1504 -1.0 -1.6 Acyl carrier protein compare
Pf1N1B4_5146 -1.0 -1.7 Chromosome initiation inhibitor compare
Pf1N1B4_5618 -1.0 -2.3 Excinuclease ABC subunit C compare
Pf1N1B4_899 -1.0 -1.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_3864 -1.0 -4.1 Recombination protein RecR compare
Pf1N1B4_2711 -1.0 -2.5 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_384 -1.0 -1.3 proteinase inhibitor compare
Pf1N1B4_676 -1.0 -2.2 FIG00953991: hypothetical protein compare
Pf1N1B4_291 -1.0 -4.7 Major outer membrane lipoprotein I compare
Pf1N1B4_1211 -1.0 -3.3 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_888 -1.0 -3.2 Transglycosylase, Slt family compare
Pf1N1B4_3499 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_767 -1.0 -3.9 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_4671 -1.0 -2.4 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_324 -1.0 -1.9 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_3078 -1.0 -1.9 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_1271 -1.0 -4.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_2214 -1.0 -2.8 Transcriptional regulator, GntR family compare
Pf1N1B4_866 -0.9 -1.4 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_2858 -0.9 -6.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_164 -0.9 -1.9 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_456 -0.9 -3.1 FIG146278: Maf/YceF/YhdE family protein compare
Pf1N1B4_1334 -0.9 -1.2 FIG00955840: hypothetical protein compare
Pf1N1B4_4436 -0.9 -1.3 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_5109 -0.9 -2.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_3290 -0.9 -2.0 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_2609 -0.9 -6.5 Catalase (EC 1.11.1.6) compare
Pf1N1B4_1329 -0.9 -4.0 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_5084 -0.9 -2.7 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_2479 -0.9 -1.9 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_4557 -0.9 -2.9 FIG00955691: hypothetical protein compare
Pf1N1B4_4176 -0.9 -1.9 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_5463 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_5912 -0.9 -2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3312 -0.9 -2.5 Tricarboxylate transport protein TctB compare
Pf1N1B4_4748 -0.9 -2.6 transporter, putative compare
Pf1N1B4_4563 -0.9 -1.7 Sulfate transporter compare
Pf1N1B4_2163 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_4516 -0.9 -2.0 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_403 -0.9 -1.2 FIG00965925: hypothetical protein compare
Pf1N1B4_5628 -0.9 -2.0 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_5095 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_1191 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_6028 -0.9 -2.7 FIG00954052: hypothetical protein compare
Pf1N1B4_3132 -0.9 -2.1 FIG121501: Prophage tail protein compare
Pf1N1B4_4257 -0.9 -1.4 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3552 -0.9 -1.6 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_4550 -0.9 -1.6 beta-ketoacyl synthase, putative compare
Pf1N1B4_3829 -0.9 -6.1 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_2768 -0.9 -2.2 DNA repair protein RadA compare
Pf1N1B4_2048 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4366 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_1351 -0.8 -2.2 Tabtoxin resistance protein compare
Pf1N1B4_6032 -0.8 -2.5 Ribose operon repressor compare
Pf1N1B4_4343 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_5376 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_1608 -0.8 -2.2 FIG00956533: hypothetical protein compare
Pf1N1B4_1419 -0.8 -2.7 putative membrane protein compare
Pf1N1B4_3636 -0.8 -1.3 FIG00953562: hypothetical protein compare
Pf1N1B4_522 -0.8 -2.0 HlyD family secretion protein compare
Pf1N1B4_1366 -0.8 -1.7 FMN-dependent NADH-azoreductase compare
Pf1N1B4_4873 -0.8 -2.6 clavaldehyde dehydrogenase compare
Pf1N1B4_5853 -0.8 -2.1 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_3249 -0.8 -3.5 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_3274 -0.8 -2.2 Fosfomycin resistance protein FosA compare
Pf1N1B4_1561 -0.8 -2.2 FIG00954300: hypothetical protein compare
Pf1N1B4_3112 -0.8 -2.7 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5898 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_2006 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_2339 -0.8 -1.4 COG1872 compare
Pf1N1B4_5722 -0.8 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_1679 -0.8 -1.1 Membrane-fusion protein compare
Pf1N1B4_4957 -0.8 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_1095 -0.8 -4.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_3468 -0.8 -1.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_3972 -0.8 -2.1 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_722 -0.8 -1.1 SAM-dependent methyltransferases compare
Pf1N1B4_2009 -0.8 -3.0 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_4960 -0.8 -1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1055 -0.8 -2.1 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_232 -0.8 -1.3 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2792 -0.8 -2.4 FIG00953454: hypothetical protein compare
Pf1N1B4_2145 -0.8 -0.9 Translation initiation inhibitor compare
Pf1N1B4_1018 -0.8 -2.9 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_846 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_3467 -0.8 -1.8 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_1866 -0.8 -1.8 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_533 -0.8 -3.1 Possible MFS Superfamily transporter precursor compare
Pf1N1B4_122 -0.8 -2.0 Inner membrane component of tripartite multidrug resistance system compare


Specific Phenotypes

For 4 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas fluorescens FW300-N1B4

For stress Nalidixic acid sodium salt across organisms