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  • Experiment set3IT036 for Pseudomonas syringae pv. syringae B728a

    Compare to:

    epiphytic; Lima bean

    Group: in planta
    Media:
    Culturing: SyringaeB728a_ML2
    By: Tyler Helmann on 3/15/18

    Specific Phenotypes

    For 7 genes in this experiment

    SEED Subsystems

    Subsystem #Specific
    Ammonia assimilation 1
    Tryptophan synthesis 1

    Metabolic Maps

    Color code by fitness: see overview map or list of maps.

    Maps containing gene(s) with specific phenotypes:

    • Pyruvate metabolism
    • Citrate cycle (TCA cycle)
    • Alanine and aspartate metabolism
    • Arginine and proline metabolism
    • Phenylalanine, tyrosine and tryptophan biosynthesis
    • Biosynthesis of phenylpropanoids
    • Biosynthesis of alkaloids derived from shikimate pathway
    • Biosynthesis of plant hormones

    MetaCyc Pathways

    Pathways that contain genes with specific phenotypes:

    Pathway #Steps #Present #Specific
    L-tryptophan biosynthesis 6 6 1
    incomplete reductive TCA cycle 7 4 1
    reductive TCA cycle I 11 7 1
    gluconeogenesis III 12 9 1
    superpathway of L-tryptophan biosynthesis 13 13 1
    (S)-lactate fermentation to propanoate, acetate and hydrogen 13 5 1
    superpathway of aromatic amino acid biosynthesis 18 18 1
    gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
    Methanobacterium thermoautotrophicum biosynthetic metabolism 56 21 1
    superpathway of chorismate metabolism 59 42 1