Experiment set3IT036 for Pseudomonas syringae pv. syringae B728a
epiphytic; Lima bean
Group: in plantaMedia:
Culturing: SyringaeB728a_ML2
By: Tyler Helmann on 3/15/18
Specific Phenotypes
For 7 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ammonia assimilation | 1 |
| Tryptophan synthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pyruvate metabolism
- Citrate cycle (TCA cycle)
- Alanine and aspartate metabolism
- Arginine and proline metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-tryptophan biosynthesis | 6 | 6 | 1 |
| incomplete reductive TCA cycle | 7 | 4 | 1 |
| reductive TCA cycle I | 11 | 7 | 1 |
| gluconeogenesis III | 12 | 9 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| (S)-lactate fermentation to propanoate, acetate and hydrogen | 13 | 5 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| gluconeogenesis II (Methanobacterium thermoautotrophicum) | 18 | 9 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 21 | 1 |
| superpathway of chorismate metabolism | 59 | 42 | 1 |