Experiment set3IT035 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Carbenicillin disodium salt 2 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1882 -5.0 -29.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf1N1B4_1492 -4.5 -2.1 FIG00959437: hypothetical protein compare
Pf1N1B4_1889 -4.1 -19.9 Fused spore maturation proteins A and B compare
Pf1N1B4_3483 -3.9 -4.6 Transcriptional regulatory protein PhoP compare
Pf1N1B4_2005 -3.6 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4636 -3.3 -3.1 TPR domain protein in aerotolerance operon compare
Pf1N1B4_3093 -3.3 -2.9 Outer membrane protein H precursor compare
Pf1N1B4_3898 -3.0 -9.0 Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) conserved
Pf1N1B4_1315 -3.0 -9.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1307 -2.9 -3.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3168 -2.8 -4.6 AmpG permease compare
Pf1N1B4_1 -2.8 -3.1 Colicin V production protein compare
Pf1N1B4_578 -2.7 -4.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4640 -2.6 -4.3 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_974 -2.6 -4.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3833 -2.6 -8.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3143 -2.5 -2.9 RecA protein compare
Pf1N1B4_1626 -2.5 -8.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1462 -2.5 -14.5 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3246 -2.4 -4.5 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_769 -2.4 -8.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3241 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_337 -2.3 -5.9 O-antigen export system permease protein RfbD compare
Pf1N1B4_4253 -2.2 -2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_2695 -2.2 -2.5 Rare lipoprotein A precursor compare
Pf1N1B4_1624 -2.2 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3590 -2.2 -5.7 hypothetical protein compare
Pf1N1B4_3846 -2.1 -7.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) conserved
Pf1N1B4_2874 -2.1 -2.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_751 -2.1 -2.3 hypothetical protein compare
Pf1N1B4_2949 -2.1 -2.9 FIG00956396: hypothetical protein compare
Pf1N1B4_1627 -2.0 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3591 -2.0 -7.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_1565 -2.0 -4.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3197 -2.0 -6.4 OmpA family protein compare
Pf1N1B4_3091 -2.0 -5.1 Membrane-associated zinc metalloprotease compare
Pf1N1B4_340 -2.0 -7.4 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_3328 -1.9 -2.2 Rhodanese-like domain protein compare
Pf1N1B4_73 -1.9 -8.3 Beta-lactamase (EC 3.5.2.6) conserved
Pf1N1B4_5476 -1.9 -2.8 hypothetical protein compare
Pf1N1B4_1441 -1.9 -9.9 Putative esterase, FIGfam005057 compare
Pf1N1B4_2004 -1.8 -2.9 putative membrane protein compare
Pf1N1B4_2008 -1.8 -9.7 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2412 -1.8 -4.0 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_447 -1.8 -14.7 FIG004453: protein YceG like compare
Pf1N1B4_2611 -1.8 -11.8 Excinuclease ABC subunit A compare
Pf1N1B4_4123 -1.8 -2.8 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_740 -1.8 -2.3 Leucyl-tRNA synthetase compare
Pf1N1B4_1868 -1.8 -7.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1417 -1.8 -9.1 NAD(P)HX epimerase / NAD(P)HX dehydratase compare
Pf1N1B4_4051 -1.7 -3.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2105 -1.7 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3942 -1.7 -4.5 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_678 -1.7 -7.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_336 -1.6 -11.0 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_1418 -1.6 -9.2 Epoxyqueuosine (oQ) reductase QueG conserved
Pf1N1B4_1468 -1.6 -10.9 InaA protein compare
Pf1N1B4_583 -1.6 -2.6 FIG00957748: hypothetical protein compare
Pf1N1B4_3864 -1.6 -6.2 Recombination protein RecR compare
Pf1N1B4_43 -1.6 -3.1 hypothetical protein compare
Pf1N1B4_4669 -1.5 -2.5 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_2959 -1.5 -4.8 FIG067310: hypothetical protein compare
Pf1N1B4_324 -1.5 -2.4 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_1637 -1.5 -2.4 FIG00954739: hypothetical protein compare
Pf1N1B4_152 -1.5 -2.7 ABC transporter, permease protein compare
Pf1N1B4_2612 -1.4 -3.9 Putative transport protein compare
Pf1N1B4_7 -1.4 -4.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_1749 -1.4 -2.0 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2283 -1.4 -1.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1469 -1.4 -10.8 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_929 -1.4 -2.8 FIG00964214: hypothetical protein compare
Pf1N1B4_888 -1.4 -3.1 Transglycosylase, Slt family compare
Pf1N1B4_1691 -1.4 -1.3 hypothetical protein compare
Pf1N1B4_2479 -1.4 -2.4 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5371 -1.4 -1.4 hypothetical protein compare
Pf1N1B4_2714 -1.4 -3.6 FOG: TPR repeat, SEL1 subfamily compare
Pf1N1B4_1463 -1.4 -6.9 hypothetical protein compare
Pf1N1B4_3849 -1.4 -3.7 Transcriptional regulator, GntR family compare
Pf1N1B4_5834 -1.3 -2.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_969 -1.3 -12.3 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_2668 -1.3 -7.7 DedA protein compare
Pf1N1B4_4912 -1.3 -3.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1317 -1.3 -2.8 Sensor histidine kinase/response regulator compare
Pf1N1B4_1246 -1.3 -1.8 FIG00954047: hypothetical protein compare
Pf1N1B4_4744 -1.3 -2.5 Transcriptional regulator, LysR family compare
Pf1N1B4_866 -1.3 -2.0 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_981 -1.3 -3.0 UPF0246 protein YaaA compare
Pf1N1B4_3909 -1.3 -1.9 Cell division inhibitor-related protein compare
Pf1N1B4_767 -1.3 -4.5 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_2206 -1.3 -5.4 FIG139438: lipoprotein B compare
Pf1N1B4_668 -1.2 -5.0 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf1N1B4_1234 -1.2 -3.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3917 -1.2 -3.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_304 -1.2 -2.0 Deoxyribonuclease TatD compare
Pf1N1B4_2391 -1.2 -7.5 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) conserved
Pf1N1B4_2067 -1.2 -2.8 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_2784 -1.2 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_971 -1.2 -8.5 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_591 -1.2 -3.1 Aldose 1-epimerase compare
Pf1N1B4_3829 -1.2 -7.9 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_4043 -1.2 -2.6 Type II and III secretion system family protein compare
Pf1N1B4_2209 -1.1 -5.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2715 -1.1 -5.7 hypothetical protein compare
Pf1N1B4_29 -1.1 -1.7 FIG00967200: hypothetical protein compare
Pf1N1B4_5666 -1.1 -2.7 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2111 -1.1 -7.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1927 -1.1 -6.1 DNA recombination and repair protein RecF compare
Pf1N1B4_1916 -1.1 -1.3 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_4949 -1.1 -2.5 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_1236 -1.1 -4.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3828 -1.1 -5.7 Ribonuclease E inhibitor RraA compare
Pf1N1B4_1629 -1.1 -2.2 FIG00958480: hypothetical protein compare
Pf1N1B4_104 -1.1 -3.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_5618 -1.1 -2.7 Excinuclease ABC subunit C compare
Pf1N1B4_441 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_3249 -1.1 -3.9 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_2948 -1.1 -2.0 FIG00954698: hypothetical protein compare
Pf1N1B4_1069 -1.1 -4.4 YrbA protein compare
Pf1N1B4_1296 -1.1 -7.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) compare
Pf1N1B4_3844 -1.1 -3.6 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) compare
Pf1N1B4_1142 -1.1 -5.5 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_3625 -1.1 -2.7 Flagellar synthesis regulator FleN compare
Pf1N1B4_3775 -1.1 -1.2 FIG00956876: hypothetical protein compare
Pf1N1B4_652 -1.1 -6.7 Sensory box histidine kinase compare
Pf1N1B4_5512 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_4563 -1.1 -1.8 Sulfate transporter compare
Pf1N1B4_1625 -1.1 -4.0 FIG00956267: hypothetical protein compare
Pf1N1B4_1446 -1.1 -2.6 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_4515 -1.1 -3.0 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_5330 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_1509 -1.0 -5.6 Putative histidine ammonia-lyase protein conserved
Pf1N1B4_2701 -1.0 -9.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf1N1B4_2282 -1.0 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_188 -1.0 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_276 -1.0 -1.4 Organic hydroperoxide resistance protein compare
Pf1N1B4_1914 -1.0 -3.7 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_3636 -1.0 -1.9 FIG00953562: hypothetical protein compare
Pf1N1B4_1617 -1.0 -5.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3809 -1.0 -2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_4695 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_2147 -1.0 -3.5 Putrescine utilization regulator compare
Pf1N1B4_973 -1.0 -8.3 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_4982 -1.0 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_707 -1.0 -4.4 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_2144 -1.0 -4.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_2177 -1.0 -1.1 FIG00953342: hypothetical protein compare
Pf1N1B4_630 -1.0 -3.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_3836 -1.0 -2.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_970 -1.0 -5.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_3543 -1.0 -6.3 Potassium uptake protein TrkH compare
Pf1N1B4_3191 -1.0 -1.4 FIG00953505: hypothetical protein compare
Pf1N1B4_904 -1.0 -1.6 DNA-binding protein HU-beta compare
Pf1N1B4_4457 -1.0 -3.0 long-chain acyl-CoA synthetase compare
Pf1N1B4_1781 -1.0 -1.2 hypothetical protein compare
Pf1N1B4_4181 -1.0 -1.9 FIG00957123: hypothetical protein compare
Pf1N1B4_626 -1.0 -4.8 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_4134 -1.0 -1.9 Na+ driven multidrug efflux pump compare
Pf1N1B4_4765 -0.9 -1.9 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_4946 -0.9 -2.3 putative aminotransferase compare
Pf1N1B4_3824 -0.9 -5.6 FIG137360: hypothetical protein compare
Pf1N1B4_4643 -0.9 -6.0 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf1N1B4_1107 -0.9 -3.3 D-galactarate dehydratase (EC 4.2.1.42) compare
Pf1N1B4_3927 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_5721 -0.9 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2912 -0.9 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1511 -0.9 -2.0 FIG027190: Putative transmembrane protein compare
Pf1N1B4_4104 -0.9 -1.5 Probable transmembrane protein compare
Pf1N1B4_1282 -0.9 -2.1 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3783 -0.9 -2.1 FIG00958237: hypothetical protein compare
Pf1N1B4_5786 -0.9 -2.1 putative membrane protein compare
Pf1N1B4_5829 -0.9 -1.4 FIG005107: hypothetical protein compare
Pf1N1B4_4335 -0.9 -1.8 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_2112 -0.9 -6.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3147 -0.9 -4.6 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_1512 -0.9 -4.1 FIG021862: membrane protein, exporter compare
Pf1N1B4_4749 -0.9 -2.5 ABC transporter ATP-binding protein uup compare
Pf1N1B4_1003 -0.9 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1771 -0.9 -6.0 Transcription accessory protein (S1 RNA-binding domain) compare
Pf1N1B4_762 -0.9 -3.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2270 -0.9 -3.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_1227 -0.9 -1.9 FIG00954870: hypothetical protein compare
Pf1N1B4_1279 -0.9 -2.0 Flp pilus assembly protein TadB compare
Pf1N1B4_4328 -0.9 -2.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_709 -0.9 -2.6 FIG00953860: hypothetical protein compare
Pf1N1B4_2173 -0.9 -1.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_972 -0.9 -7.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_4818 -0.9 -1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4154 -0.9 -1.9 Transcriptional regulator, AraC family compare
Pf1N1B4_4976 -0.9 -2.5 D-serine/D-alanine/glycine transporter compare
Pf1N1B4_629 -0.9 -1.1 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_961 -0.9 -6.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_2006 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_4517 -0.8 -1.8 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_76 -0.8 -1.9 ATP binding protein compare
Pf1N1B4_199 -0.8 -3.0 FIG049111: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_4531 -0.8 -1.6 FIG01221261: hypothetical protein compare
Pf1N1B4_3553 -0.8 -4.1 Segregation and condensation protein A compare
Pf1N1B4_4979 -0.8 -2.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_4931 -0.8 -1.5 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_844 -0.8 -3.0 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare


Specific Phenotypes

For 18 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas fluorescens FW300-N1B4

For stress Carbenicillin disodium salt across organisms