Experiment set3IT035 for Pseudomonas syringae pv. syringae B728a

Compare to:

epiphytic; Lima bean

200 most important genes:

  gene name fitness t score description  
Psyr_4580 -5.8 -4.0 anthranilate phosphoribosyltransferase compare
Psyr_1984 -5.5 -5.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_1983 -5.5 -3.8 3-isopropylmalate dehydratase, large subunit compare
Psyr_0473 -5.2 -6.1 Methionine biosynthesis MetW compare
Psyr_4581 -5.1 -4.9 anthranilate synthase, component II compare
Psyr_0557 -5.0 -6.0 phosphoserine phosphatase compare
Psyr_4609 -4.9 -13.0 anthranilate synthase, component I compare
Psyr_4369 -4.9 -6.7 glutamate-5-semialdehyde dehydrogenase compare
Psyr_1985 -4.9 -9.3 3-isopropylmalate dehydrogenase compare
Psyr_1669 -4.8 -10.2 O-succinylhomoserine sulfhydrylase compare
Psyr_0469 -4.8 -10.6 dihydroxyacid dehydratase compare
Psyr_4852 -4.7 -8.4 D-3-phosphoglycerate dehydrogenase compare
Psyr_1668 -4.6 -7.0 amidophosphoribosyltransferase compare
Psyr_0531 -4.5 -3.1 LmbE-like protein compare
Psyr_0846 -4.5 -12.7 acetolactate synthase, large subunit compare
Psyr_1914 -4.5 -11.5 transaldolase compare
Psyr_0474 -4.4 -11.3 homoserine O-acetyltransferase compare
Psyr_4894 -4.4 -9.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0529 -4.3 -7.2 Glycosyl transferase, group 1 compare
Psyr_0411 -4.3 -20.0 glutamate synthase (NADPH) large subunit compare
Psyr_0025 -4.2 -5.7 shikimate dehydrogenase compare
Psyr_4270 -4.1 -11.1 serine hydroxymethyltransferase compare
Psyr_0034 -4.1 -4.0 tryptophan synthase, beta chain compare
Psyr_1269 -4.0 -4.7 phosphoribosylformylglycinamidine synthase compare
Psyr_0847 -4.0 -9.3 acetolactate synthase, small subunit compare
Psyr_1663 -4.0 -6.0 phosphoribosylanthranilate isomerase compare
Psyr_3174 -4.0 -6.5 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_3805 -4.0 -3.8 hypothetical protein compare
Psyr_0848 -4.0 -10.7 ketol-acid reductoisomerase compare
Psyr_4893 -4.0 -2.5 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4407 -4.0 -3.8 phosphoribosylamine--glycine ligase compare
Psyr_2077 -3.8 -8.1 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_2462 -3.8 -8.3 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0917 -3.8 -11.0 ABC-2 compare
Psyr_4125 -3.7 -5.4 Protein of unknown function DUF1043 compare
Psyr_4133 -3.7 -15.4 histidinol dehydrogenase compare
Psyr_0412 -3.6 -14.0 glutamate synthase (NADPH) small subunit compare
Psyr_4897 -3.6 -5.4 imidazoleglycerol-phosphate dehydratase compare
Psyr_0918 -3.6 -15.3 ABC transporter compare
Psyr_0532 -3.6 -6.8 conserved hypothetical protein compare
Psyr_0826 -3.4 -9.5 glucose-6-phosphate isomerase compare
Psyr_1373 -3.4 -3.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1121 -3.4 -3.1 6-phosphogluconolactonase compare
Psyr_4686 -3.4 -6.8 8-amino-7-oxononanoate synthase compare
Psyr_4132 -3.4 -10.6 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0033 -3.3 -5.0 tryptophan synthase, alpha chain compare
Psyr_5065 -3.3 -9.4 ATP-dependent DNA helicase UvrD compare
Psyr_0704 -3.1 -8.6 glutamate 5-kinase compare
Psyr_4134 -3.1 -10.1 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_3287 -3.0 -3.2 DNA topoisomerase I compare
Psyr_1108 -3.0 -12.1 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_0951 -3.0 -5.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4687 -2.9 -9.4 biotin synthase compare
Psyr_2980 -2.9 -4.3 UDP-glucose pyrophosphorylase compare
Psyr_1408 -2.8 -4.2 Holliday junction endonuclease RuvC compare
Psyr_4512 -2.8 -7.0 putative phage-related protein compare
Psyr_4896 -2.7 -5.5 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4128 -2.7 -10.4 sulfate adenylyltransferase subunit 2 compare
Psyr_0827 -2.7 -5.4 pantothenate synthetase compare
Psyr_4018 -2.6 -10.9 Formyltetrahydrofolate deformylase compare
Psyr_0378 -2.6 -11.3 Glycosyl transferase, family 2 compare
Psyr_2461 -2.5 -3.4 Uncharacterized conserved protein UCP030820 compare
Psyr_0377 -2.5 -9.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1955 -2.5 -4.1 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4408 -2.5 -10.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4683 -2.4 -5.1 dethiobiotin synthase compare
Psyr_1410 -2.4 -5.2 Holliday junction DNA helicase RuvB compare
Psyr_1341 -2.4 -13.7 Protein-P-II uridylyltransferase compare
Psyr_3020 -2.3 -3.6 precorrin-4 C11-methyltransferase compare
Psyr_3433 -2.3 -6.0 Protein-glutamate methylesterase compare
Psyr_4579 -2.2 -5.7 indole-3-glycerol phosphate synthase compare
Psyr_4822 -2.2 -3.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4126 -2.2 -12.8 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_1910 -2.2 -7.2 VacJ-like lipoprotein compare
Psyr_0208 -2.2 -7.2 endoribonuclease L-PSP compare
Psyr_0454 -2.2 -5.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4684 -2.1 -3.1 biotin synthesis protein BioC compare
Psyr_1613 -2.1 -5.0 septum site-determining protein MinC compare
Psyr_0386 -2.0 -2.8 phosphoribosyl-AMP cyclohydrolase compare
Psyr_3555 -2.0 -2.7 aspartate kinase compare
Psyr_1109 -2.0 -8.3 6-phosphogluconate dehydratase compare
Psyr_4821 -2.0 -7.6 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_4882 -2.0 -7.2 protein translocase subunit secB compare
Psyr_0832 -1.9 -8.8 Two-component sensor kinase CbrA compare
Psyr_0811 -1.9 -6.4 Integral membrane protein TerC compare
Psyr_3674 -1.9 -2.8 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_1544 -1.9 -4.9 SirA-like protein compare
Psyr_0111 -1.9 -9.6 hypothetical protein compare
Psyr_3886 -1.9 -2.1 methionyl-tRNA synthetase compare
Psyr_0983 -1.9 -8.0 Protein of unknown function DUF159 compare
Psyr_0099 -1.9 -2.8 Conserved hypothetical protein compare
Psyr_1069 -1.8 -4.1 molybdopterin synthase subunit MoaE compare
Psyr_4362 -1.8 -3.3 Rare lipoprotein A compare
Psyr_1257 -1.8 -6.2 2-isopropylmalate synthase compare
Psyr_0201 -1.8 -7.6 ATP-dependent DNA helicase RecG compare
Psyr_4844 -1.8 -6.5 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_1751 -1.8 -5.9 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1973 -1.8 -4.2 Aspartate transaminase compare
Psyr_0976 -1.8 -4.7 Malate:quinone-oxidoreductase compare
Psyr_3013 -1.7 -2.8 magnesium chelatase subunit ChlD compare
Psyr_1140 -1.7 -4.4 Disulfide bond formation protein DsbB compare
Psyr_4158 -1.7 -8.6 conserved hypothetical protein compare
Psyr_1747 -1.7 -5.3 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_5132 -1.7 -3.5 Glucose-inhibited division protein A subfamily compare
Psyr_3199 -1.6 -3.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0576 -1.6 -1.5 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1614 -1.6 -3.1 lipid A biosynthesis acyltransferase compare
Psyr_5060 -1.6 -9.7 Oxaloacetate decarboxylase, alpha subunit compare
Psyr_4887 -1.6 -8.1 Peptidase S41A, C-terminal protease compare
Psyr_3286 -1.6 -7.7 conserved hypothetical protein compare
Psyr_3466 -1.5 -3.0 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_1251 -1.5 -4.0 quinoprotein compare
Psyr_2557 -1.5 -1.6 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_3450 -1.5 -4.0 Hpt compare
Psyr_2137 -1.5 -2.4 molybdopterin molybdochelatase compare
Psyr_4144 -1.4 -2.2 Protein of unknown function DUF1239 compare
Psyr_5061 -1.4 -7.3 acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase compare
Psyr_0784 -1.4 -3.1 CheW-like protein compare
Psyr_3427 -1.4 -3.6 conserved hypothetical protein compare
Psyr_3202 -1.4 -2.3 NADH dehydrogenase subunit G compare
Psyr_0954 -1.4 -2.3 Protein of unknown function UPF0153 compare
Psyr_3146 -1.4 -2.1 general secretion pathway protein J, putative compare
Psyr_1378 -1.3 -2.3 RecA protein compare
Psyr_4830 -1.3 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4754 -1.3 -1.3 16S rRNA m(2)G-966 methyltransferase compare
Psyr_1802 -1.3 -2.9 transcriptional regulator, AsnC family compare
Psyr_1277 -1.3 -2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4161 -1.3 -2.1 Rod shape-determining protein MreD compare
Psyr_3791 -1.3 -3.2 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_4567 -1.3 -4.1 Protein of unknown function UPF0075 compare
Psyr_4070 -1.3 -5.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0919 -1.3 -8.4 Chromosome segregation ATPase-like protein compare
Psyr_0579 -1.3 -7.6 RNAse R compare
Psyr_0385 -1.2 -2.0 phosphoribosyl-ATP pyrophosphatase compare
Psyr_4300 -1.2 -2.2 DNA polymerase III, epsilon subunit compare
Psyr_4902 -1.2 -2.0 Protein of unknown function DUF495 compare
Psyr_3179 -1.2 -3.0 DNA translocase FtsK compare
Psyr_4350 -1.2 -2.4 Protein of unknown function DUF218 compare
Psyr_1963 -1.2 -4.3 Cyclic peptide transporter compare
Psyr_4029 -1.2 -5.3 pyruvate kinase compare
Psyr_5062 -1.2 -3.6 transcriptional regulator, LysR family compare
Psyr_2327 -1.2 -3.1 GTP cyclohydrolase subunit MoaA compare
Psyr_2779 -1.2 -2.5 Phage minor tail compare
Psyr_1120 -1.2 -5.8 glucose-6-phosphate 1-dehydrogenase compare
Psyr_3432 -1.2 -2.3 MotA/TolQ/ExbB proton channel compare
Psyr_4991 -1.2 -2.0 hypothetical protein compare
Psyr_4417 -1.2 -1.9 Ferredoxin--nitrite reductase compare
Psyr_3691 -1.2 -5.7 conserved hypothetical protein compare
Psyr_2073 -1.2 -3.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_1056 -1.2 -3.4 Poly(beta-D-mannuronate) lyase compare
Psyr_0294 -1.1 -4.3 Exopolyphosphatase compare
Psyr_1067 -1.1 -3.3 GTP cyclohydrolase subunit MoaC compare
Psyr_4203 -1.1 -1.7 SsrA-binding protein compare
Psyr_2757 -1.1 -2.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1748 -1.1 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0947 -1.1 -4.9 TPR repeat protein:TPR repeat protein compare
Psyr_0046 -1.1 -3.7 conserved hypothetical protein compare
Psyr_2264 -1.1 -2.0 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3289 -1.1 -2.9 3-ketoacyl-CoA thiolase compare
Psyr_2200 -1.1 -0.9 UreE urease accessory, N-terminal compare
Psyr_4015 -1.1 -1.9 conserved domain protein compare
Psyr_4341 -1.1 -5.2 thiamine-phosphate diphosphorylase compare
Psyr_4740 -1.1 -3.7 thiazole-phosphate synthase compare
Psyr_0167 -1.1 -3.3 hypothetical protein compare
Psyr_1247 -1.1 -1.6 conserved hypothetical protein compare
Psyr_2588 -1.1 -1.9 HpcH/HpaI aldolase compare
Psyr_3552 -1.1 -2.7 Divalent cation transporter compare
Psyr_0936 -1.0 -6.9 Glycosyl transferase, group 1 compare
Psyr_3675 -1.0 -2.2 adenosylcobinamide kinase compare
Psyr_3338 -1.0 -4.9 gluconate permease GntT compare
Psyr_2251 -1.0 -2.5 Phosphonate metabolism PhnG compare
Psyr_0920 -1.0 -8.7 Glycosyl transferase, group 1 compare
Psyr_1249 -1.0 -3.9 histidyl-tRNA synthetase compare
Psyr_3563 -1.0 -4.0 arginine succinyltransferase compare
Psyr_0335 -1.0 -6.5 membrane protein, putative compare
Psyr_2262 -1.0 -2.5 Peptidase M20:Peptidase M20 compare
Psyr_3637 -1.0 -7.5 Glycosyl transferase, family 4 compare
Psyr_0831 -1.0 -1.5 Two-component response regulator CbrB compare
Psyr_4658 -1.0 -2.4 CDS compare
Psyr_1965 -1.0 -4.2 Twin-arginine translocation pathway signal compare
Psyr_3280 -1.0 -2.6 methylthioadenosine phosphorylase compare
Psyr_3262 -1.0 -2.2 dnaK suppressor protein, putative compare
Psyr_1337 -1.0 -2.2 Conserved hypothetical protein ArsC related protein compare
Psyr_4414 -1.0 -4.1 precorrin-3 methyltransferase compare
Psyr_1943 -0.9 -3.3 Sigma-70 region 2 compare
Psyr_0393 -0.9 -3.2 Protein of unknown function DUF971 compare
Psyr_0270 -0.9 -2.3 DNA polymerase I compare
Psyr_0574 -0.9 -3.4 protease FtsH subunit HflK compare
Psyr_0638 -0.9 -2.0 Peptidase S16, lon N-terminal compare
Psyr_4481 -0.9 -3.7 outer membrane transport energization protein ExbB compare
Psyr_3014 -0.9 -2.0 protoporphyrin IX magnesium-chelatase compare
Psyr_3337 -0.9 -2.4 gluconate kinase, SKI family compare
Psyr_2612 -0.9 -2.7 syrP protein, putative compare
Psyr_2747 -0.9 -2.1 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
Psyr_0014 -0.9 -2.3 lipid A biosynthesis acyltransferase compare
Psyr_0916 -0.9 -6.6 GDP-mannose 4,6-dehydratase compare
Psyr_3636 -0.9 -6.8 Polysaccharide biosynthesis protein CapD compare
Psyr_3954 -0.9 -3.7 GTP-binding protein LepA compare
Psyr_2126 -0.9 -3.1 4-carboxymuconolactone decarboxylase compare
Psyr_0264 -0.9 -2.6 Alginate biosynthesis sensor protein KinB compare


Specific Phenotypes

For 7 genes in this experiment