Experiment set3IT034 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Glucosamine Hydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_175 -3.1 -2.1 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2272 -3.0 -3.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1831 -2.6 -10.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1534 -2.5 -16.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4671 -2.4 -3.5 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_15 -2.4 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_742 -2.4 -7.6 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1533 -2.4 -7.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_899 -2.4 -2.2 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_1434 -2.3 -7.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4678 -2.3 -4.4 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_2384 -2.2 -10.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1067 -2.2 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_58 -2.2 -6.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2549 -2.2 -7.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1408 -2.2 -4.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_403 -2.1 -2.1 FIG00965925: hypothetical protein compare
Pf1N1B4_1307 -2.1 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2458 -2.1 -3.6 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_1624 -2.1 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1611 -2.1 -4.3 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2880 -2.1 -10.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2303 -2.0 -10.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_883 -2.0 -2.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_5552 -2.0 -2.6 hypothetical protein compare
Pf1N1B4_479 -1.9 -3.1 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_2547 -1.9 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2360 -1.9 -2.2 hypothetical protein compare
Pf1N1B4_4563 -1.8 -2.4 Sulfate transporter compare
Pf1N1B4_617 -1.8 -2.1 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_4299 -1.8 -3.0 sensor histidine kinase compare
Pf1N1B4_6 -1.8 -4.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2548 -1.8 -5.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_648 -1.8 -13.9 Outer membrane porin, OprD family compare
Pf1N1B4_1180 -1.7 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_1627 -1.7 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_419 -1.7 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_350 -1.7 -6.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_101 -1.7 -2.4 hypothetical protein compare
Pf1N1B4_5995 -1.7 -2.4 Transporter, MFS superfamily compare
Pf1N1B4_4523 -1.7 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3334 -1.7 -4.0 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_3713 -1.7 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_5018 -1.7 -2.5 FIG00962345: hypothetical protein compare
Pf1N1B4_2453 -1.7 -1.2 hypothetical protein compare
Pf1N1B4_4777 -1.6 -3.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_2244 -1.6 -1.8 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_12 -1.6 -5.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1315 -1.6 -6.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2545 -1.6 -10.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1830 -1.6 -6.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_673 -1.6 -2.7 MoxR-like ATPases compare
Pf1N1B4_2105 -1.6 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4007 -1.6 -3.0 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5645 -1.6 -3.1 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_846 -1.5 -1.5 hypothetical protein compare
Pf1N1B4_1626 -1.5 -6.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2338 -1.5 -6.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4946 -1.5 -3.2 putative aminotransferase compare
Pf1N1B4_5912 -1.5 -3.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2568 -1.5 -2.2 Translation elongation factor Tu compare
Pf1N1B4_544 -1.5 -2.8 Small-conductance mechanosensitive channel compare
Pf1N1B4_847 -1.4 -6.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_5109 -1.4 -2.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_2224 -1.4 -2.2 FIG00953390: hypothetical protein compare
Pf1N1B4_1056 -1.4 -3.1 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf1N1B4_567 -1.4 -1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5880 -1.4 -2.1 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_866 -1.4 -1.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_359 -1.4 -2.1 GGDEF domain protein compare
Pf1N1B4_4001 -1.4 -2.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_2823 -1.4 -2.5 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_3081 -1.4 -11.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_835 -1.3 -2.6 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_1691 -1.3 -1.4 hypothetical protein compare
Pf1N1B4_3316 -1.3 -2.6 Tricarboxylate transport transcriptional regulator TctD compare
Pf1N1B4_2337 -1.3 -3.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1561 -1.3 -2.5 FIG00954300: hypothetical protein compare
Pf1N1B4_4450 -1.3 -2.9 Choline dehydrogenase (EC 1.1.99.1) compare
Pf1N1B4_1619 -1.3 -7.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2733 -1.3 -1.5 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_959 -1.3 -7.8 Stringent starvation protein A compare
Pf1N1B4_5769 -1.3 -1.8 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_1610 -1.3 -3.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_5753 -1.3 -2.1 putative membrane protein compare
Pf1N1B4_4429 -1.3 -2.0 No significant database matches compare
Pf1N1B4_4238 -1.3 -2.5 hypothetical protein compare
Pf1N1B4_5709 -1.3 -2.6 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_1782 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_198 -1.2 -2.2 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_5829 -1.2 -1.7 FIG005107: hypothetical protein compare
Pf1N1B4_2878 -1.2 -6.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_751 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_4212 -1.2 -1.4 Gfa-like protein compare
Pf1N1B4_3802 -1.2 -1.6 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_1317 -1.2 -2.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_68 -1.2 -2.4 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_758 -1.2 -2.8 Bacterioferritin compare
Pf1N1B4_4350 -1.2 -3.2 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_1227 -1.2 -2.7 FIG00954870: hypothetical protein compare
Pf1N1B4_2269 -1.2 -1.9 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_4153 -1.2 -2.4 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf1N1B4_4969 -1.2 -1.4 FIG00956189: hypothetical protein compare
Pf1N1B4_5059 -1.2 -1.1 Transcriptional regulator, LysR family compare
Pf1N1B4_5803 -1.1 -2.2 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
Pf1N1B4_3011 -1.1 -1.9 Tyrosine recombinase XerD compare
Pf1N1B4_2917 -1.1 -5.4 FIG140336: TPR domain protein compare
Pf1N1B4_3372 -1.1 -2.5 FIG00962464: hypothetical protein compare
Pf1N1B4_4929 -1.1 -1.6 Opine oxidase subunit B compare
Pf1N1B4_1571 -1.1 -3.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2469 -1.1 -2.3 Glutathione S-transferase family protein compare
Pf1N1B4_2001 -1.1 -3.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_4765 -1.1 -1.8 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_5330 -1.1 -1.2 hypothetical protein compare
Pf1N1B4_4017 -1.1 -1.4 DNA-binding heavy metal response regulator compare
Pf1N1B4_2465 -1.1 -1.5 Two-component response regulator CreB compare
Pf1N1B4_4826 -1.1 -1.2 glutamine synthetase family protein compare
Pf1N1B4_3518 -1.1 -1.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_647 -1.1 -4.7 hypothetical protein compare
Pf1N1B4_2145 -1.1 -1.0 Translation initiation inhibitor compare
Pf1N1B4_5112 -1.1 -2.2 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_5791 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_1234 -1.1 -2.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4913 -1.1 -2.6 hypothetical protein compare
Pf1N1B4_4566 -1.1 -1.6 Universal stress protein family 7 compare
Pf1N1B4_4890 -1.1 -1.9 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Pf1N1B4_2004 -1.1 -1.5 putative membrane protein compare
Pf1N1B4_2401 -1.1 -1.9 Lipoprotein, putative compare
Pf1N1B4_3091 -1.0 -3.2 Membrane-associated zinc metalloprotease compare
Pf1N1B4_3074 -1.0 -1.3 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_174 -1.0 -3.3 Lipid A export ATP-binding/permease protein MsbA compare
Pf1N1B4_2400 -1.0 -1.4 FIG00955006: hypothetical protein compare
Pf1N1B4_5591 -1.0 -1.6 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_678 -1.0 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3504 -1.0 -2.1 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_3212 -1.0 -2.6 hypothetical protein compare
Pf1N1B4_5307 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_3629 -1.0 -3.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf1N1B4_3241 -1.0 -1.0 hypothetical protein compare
Pf1N1B4_3184 -1.0 -1.7 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_2857 -1.0 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5133 -1.0 -1.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4764 -1.0 -2.7 2-ketogluconate transporter compare
Pf1N1B4_4894 -1.0 -2.6 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_4253 -1.0 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5666 -1.0 -1.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1738 -1.0 -3.3 RNA polymerase sigma-54 factor RpoN compare
Pf1N1B4_3906 -1.0 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3833 -1.0 -4.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5833 -1.0 -1.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_753 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_5653 -1.0 -2.9 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_5310 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_204 -1.0 -2.4 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_3938 -1.0 -1.8 Integral membrane protein TerC compare
Pf1N1B4_3412 -1.0 -2.6 CTP synthase (EC 6.3.4.2) compare
Pf1N1B4_4587 -0.9 -1.4 probable dioxygenase compare
Pf1N1B4_1565 -0.9 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5158 -0.9 -2.2 Endoglucanase precursor (EC 3.2.1.4) compare
Pf1N1B4_1730 -0.9 -1.8 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_2433 -0.9 -2.1 FIG00953108: hypothetical protein compare
Pf1N1B4_115 -0.9 -1.4 Membrane protein mosC compare
Pf1N1B4_4533 -0.9 -1.3 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_4509 -0.9 -1.7 Aldose 1-epimerase compare
Pf1N1B4_1353 -0.9 -2.4 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_3020 -0.9 -2.3 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_4851 -0.9 -1.1 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_4516 -0.9 -1.6 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_35 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_230 -0.9 -1.4 FIG00953472: hypothetical protein compare
Pf1N1B4_76 -0.9 -1.4 ATP binding protein compare
Pf1N1B4_2757 -0.9 -2.2 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_3494 -0.9 -1.5 Flavoprotein WrbA compare
Pf1N1B4_5853 -0.9 -2.2 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_1992 -0.9 -3.2 Glutamine synthetase adenylyltransferase compare
Pf1N1B4_762 -0.9 -3.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3981 -0.9 -1.3 Predicted carboxypeptidase compare
Pf1N1B4_4667 -0.9 -1.8 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_3990 -0.9 -2.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_5679 -0.9 -3.8 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_3508 -0.9 -1.8 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2335 -0.9 -2.4 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_3648 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_7 -0.9 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_2959 -0.9 -2.9 FIG067310: hypothetical protein compare
Pf1N1B4_2003 -0.9 -2.4 FIG00956226: hypothetical protein compare
Pf1N1B4_1519 -0.9 -1.9 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_4802 -0.9 -1.7 polysaccharide deacetylase compare
Pf1N1B4_3722 -0.9 -1.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2437 -0.9 -2.8 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf1N1B4_4377 -0.9 -1.2 Cell wall hydrolyses involved in spore germination compare
Pf1N1B4_5520 -0.9 -2.6 General secretion pathway protein E compare
Pf1N1B4_1463 -0.8 -3.7 hypothetical protein compare
Pf1N1B4_1226 -0.8 -2.9 FIG01201438: hypothetical protein compare
Pf1N1B4_5269 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_5057 -0.8 -2.4 mandelate racemase family protein Pfl_3283 compare
Pf1N1B4_4903 -0.8 -2.4 ABC-type protease exporter, outer membrane component PrtF/AprF compare
Pf1N1B4_4337 -0.8 -1.2 Transcriptional regulator compare
Pf1N1B4_4736 -0.8 -1.3 Fap amyloid fibril minor component compare
Pf1N1B4_2774 -0.8 -1.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Glucosamine Hydrochloride in Pseudomonas fluorescens FW300-N1B4

For nitrogen source D-Glucosamine Hydrochloride across organisms