Experiment set3IT034 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium nitrate nitrogen source; low aeration

200 most important genes:

  gene name fitness t score description  
HSERO_RS18430 -6.9 -6.8 chorismate mutase compare
HSERO_RS02330 -6.1 -6.0 aspartate carbamoyltransferase compare
HSERO_RS16505 -6.1 -9.2 3-isopropylmalate dehydratase small subunit compare
HSERO_RS20350 -6.0 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS20330 -5.8 -5.6 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS20310 -5.8 -3.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS00455 -5.7 -10.3 homoserine O-acetyltransferase compare
HSERO_RS15680 -5.7 -8.5 chemotaxis protein CheY compare
HSERO_RS07160 -5.6 -5.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS20345 -5.6 -7.5 histidinol dehydrogenase compare
HSERO_RS08650 -5.4 -11.3 acetolactate synthase compare
HSERO_RS16500 -5.4 -7.4 3-isopropylmalate dehydrogenase compare
HSERO_RS16480 -5.2 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS19445 -5.1 -9.6 anthranilate phosphoribosyltransferase compare
HSERO_RS19510 -5.1 -10.3 threonine dehydratase compare
HSERO_RS00795 -5.0 -4.9 glycerol-3-phosphate dehydrogenase compare
HSERO_RS01935 -5.0 -6.8 3-dehydroquinate dehydratase compare
HSERO_RS16515 -4.9 -9.1 isopropylmalate isomerase compare
HSERO_RS15685 -4.9 -13.7 histidine kinase compare
HSERO_RS19595 -4.7 -15.4 glutamate synthase compare
HSERO_RS14540 -4.7 -5.3 nitrite reductase conserved
HSERO_RS02650 -4.7 -8.3 dihydroxy-acid dehydratase compare
HSERO_RS17185 -4.6 -12.3 2-isopropylmalate synthase compare
HSERO_RS10865 -4.5 -13.3 PII uridylyl-transferase compare
HSERO_RS16475 -4.5 -2.5 tryptophan synthase subunit alpha compare
HSERO_RS18990 -4.4 -6.1 pyrroline-5-carboxylate reductase compare
HSERO_RS02340 -4.4 -15.0 dihydroorotase compare
HSERO_RS20315 -4.2 -4.9 imidazole glycerol phosphate synthase compare
HSERO_RS04340 -4.2 -9.5 gamma-glutamyl ligase compare
HSERO_RS14535 -4.2 -14.4 nitrite reductase conserved
HSERO_RS19435 -4.2 -9.6 anthranilate synthase subunit I compare
HSERO_RS20920 -4.2 -4.9 3-dehydroquinate synthase compare
HSERO_RS20320 -4.1 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS15585 -4.0 -13.4 cobalamin biosynthesis protein CbiX compare
HSERO_RS15555 -4.0 -8.4 oxidoreductase compare
HSERO_RS01815 -3.9 -8.2 gamma-glutamyl kinase compare
HSERO_RS17815 -3.9 -2.6 glycosyl transferase compare
HSERO_RS19450 -3.8 -5.9 indole-3-glycerol-phosphate synthase compare
HSERO_RS16440 -3.6 -4.5 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS11065 -3.6 -4.8 quinolinate synthetase compare
HSERO_RS08660 -3.5 -7.4 ketol-acid reductoisomerase compare
HSERO_RS18425 -3.4 -3.6 prephenate dehydrogenase compare
HSERO_RS11070 -3.4 -6.1 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS15550 -3.3 -4.6 sulfite reductase compare
HSERO_RS16470 -3.2 -3.6 tryptophan synthase subunit alpha compare
HSERO_RS14530 -3.0 -9.5 MFS transporter conserved
HSERO_RS11085 -2.9 -8.6 L-aspartate oxidase compare
HSERO_RS13315 -2.9 -1.6 ferredoxin compare
HSERO_RS02325 -2.9 -6.1 uracil phosphoribosyltransferase compare
HSERO_RS01990 -2.9 -5.9 shikimate 5-dehydrogenase compare
HSERO_RS07400 -2.9 -4.8 LysR family transcriptional regulator compare
HSERO_RS00800 -2.8 -4.0 hypothetical protein compare
HSERO_RS16660 -2.8 -7.5 NAD-dependent dehydratase compare
HSERO_RS10460 -2.8 -1.5 homoserine dehydrogenase compare
HSERO_RS07390 -2.7 -7.5 tartrate dehydrogenase compare
HSERO_RS15575 -2.7 -1.9 uroporphyrin-III C-methyltransferase compare
HSERO_RS20325 -2.7 -5.2 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS22335 -2.6 -10.9 nitrate response regulator protein conserved
HSERO_RS13230 -2.5 -2.4 cobyric acid synthase compare
HSERO_RS04230 -2.5 -5.9 LuxR family transcriptional regulator compare
HSERO_RS04325 -2.4 -5.0 helicase I compare
HSERO_RS15560 -2.4 -4.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS04335 -2.3 -2.8 sodium:proton antiporter compare
HSERO_RS10455 -2.3 -8.8 aminotransferase compare
HSERO_RS16885 -2.2 -0.9 magnesium-transporting ATPase compare
HSERO_RS09770 -2.2 -5.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS03595 -2.1 -4.0 cation transporter compare
HSERO_RS19590 -2.1 -1.1 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS09220 -2.1 -4.2 hypothetical protein compare
HSERO_RS09050 -2.1 -2.9 2-aminoadipate aminotransferase compare
HSERO_RS13660 -2.0 -2.7 membrane protein compare
HSERO_RS00835 -2.0 -4.3 molybdopterin biosynthesis protein MoeB compare
HSERO_RS17980 -2.0 -2.9 GTP-binding protein compare
HSERO_RS21580 -2.0 -5.6 membrane protein conserved
HSERO_RS20355 -2.0 -3.7 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS09775 -2.0 -2.4 cobalamin synthase compare
HSERO_RS04330 -2.0 -5.6 ATP-dependent exonuclease compare
HSERO_RS02130 -2.0 -5.2 thiazole synthase compare
HSERO_RS13260 -1.9 -3.3 cobinamide adenolsyltransferase compare
HSERO_RS21740 -1.9 -7.3 methionine synthase compare
HSERO_RS13255 -1.9 -4.9 cobyrinic acid a,c-diamide synthase compare
HSERO_RS07935 -1.8 -8.2 serine acetyltransferase compare
HSERO_RS13305 -1.8 -4.2 magnesium chelatase compare
HSERO_RS02120 -1.8 -11.3 phosphomethylpyrimidine synthase ThiC compare
HSERO_RS13270 -1.8 -5.3 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS15570 -1.8 -6.6 sulfate adenylyltransferase compare
HSERO_RS13965 -1.7 -1.7 single-stranded DNA exonuclease compare
HSERO_RS08075 -1.7 -1.8 ferredoxin compare
HSERO_RS22990 -1.7 -6.2 transcriptional regulator compare
HSERO_RS04235 -1.7 -8.1 C4-dicarboxylate ABC transporter compare
HSERO_RS13275 -1.6 -2.6 cobalamin biosynthesis protein CbiG compare
HSERO_RS02135 -1.6 -4.8 phosphomethylpyrimidine kinase compare
HSERO_RS00430 -1.6 -3.6 glutamate--cysteine ligase compare
HSERO_RS13280 -1.6 -2.9 precorrin-4 C11-methyltransferase compare
HSERO_RS02140 -1.6 -1.2 thiamine-phosphate synthase compare
HSERO_RS02125 -1.6 -6.8 thiamine biosynthesis protein ThiS compare
HSERO_RS06650 -1.6 -3.6 MarR family transcriptional regulator compare
HSERO_RS17810 -1.5 -0.6 glycosyl transferase compare
HSERO_RS10395 -1.5 -2.5 phosphate transport regulator compare
HSERO_RS06530 -1.5 -1.3 muconolactone delta-isomerase compare
HSERO_RS22980 -1.5 -5.9 membrane protein compare
HSERO_RS13240 -1.4 -3.8 cobalamin biosynthesis protein CobD compare
HSERO_RS16075 -1.4 -4.3 coproporphyrinogen III oxidase compare
HSERO_RS05515 -1.4 -0.8 glucose-6-phosphate isomerase compare
HSERO_RS10815 -1.4 -3.5 chromosome segregation protein SMC compare
HSERO_RS05500 -1.4 -1.8 transaldolase compare
HSERO_RS15565 -1.4 -3.6 sulfate adenylyltransferase subunit 2 compare
HSERO_RS02160 -1.4 -1.8 DNA-dependent helicase compare
HSERO_RS13285 -1.4 -1.5 precorrin-2 C20-methyltransferase compare
HSERO_RS13310 -1.4 -6.3 cobaltochelatase compare
HSERO_RS13655 -1.3 -3.1 hypothetical protein compare
HSERO_RS00425 -1.3 -8.0 ammonia channel protein conserved
HSERO_RS03270 -1.3 -3.4 protein RecA compare
HSERO_RS16840 -1.2 -5.3 competence damage-inducible protein A compare
HSERO_RS08515 -1.2 -3.0 diguanylate cyclase compare
HSERO_RS17110 -1.2 -1.9 ribonuclease H compare
HSERO_RS00965 -1.2 -0.8 trehalose-phosphatase compare
HSERO_RS03085 -1.2 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS13295 -1.2 -2.2 membrane protein compare
HSERO_RS13320 -1.1 -3.5 membrane protein compare
HSERO_RS08405 -1.1 -0.6 membrane protein compare
HSERO_RS01825 -1.1 -4.3 RNA pyrophosphohydrolase compare
HSERO_RS16450 -1.1 -2.5 colicin V production protein compare
HSERO_RS15545 -1.1 -3.9 membrane protein compare
HSERO_RS13105 -1.1 -3.4 C4-dicarboxylate ABC transporter compare
HSERO_RS09235 -1.1 -1.2 MarR family transcriptional regulator compare
HSERO_RS09780 -1.1 -1.9 phosphoglycerate mutase compare
HSERO_RS08115 -1.1 -1.3 acyl-CoA-binding protein compare
HSERO_RS05620 -1.1 -1.4 dehydratase compare
HSERO_RS10650 -1.0 -3.1 hypothetical protein compare
HSERO_RS15665 -1.0 -0.9 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS09660 -1.0 -2.1 ribonuclease III compare
HSERO_RS20260 -1.0 -2.0 2-alkenal reductase compare
HSERO_RS22580 -1.0 -2.4 LysR family transcriptional regulator compare
HSERO_RS10410 -1.0 -2.4 alkyl hydroperoxide reductase compare
HSERO_RS07910 -1.0 -1.6 alkylhydroperoxidase compare
HSERO_RS07970 -1.0 -1.7 formyltetrahydrofolate deformylase compare
HSERO_RS18600 -1.0 -1.3 transcriptional regulator compare
HSERO_RS17900 -1.0 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS13265 -1.0 -2.5 G3E family GTPase compare
HSERO_RS09455 -1.0 -1.6 NAD synthetase compare
HSERO_RS14950 -0.9 -2.0 purine-binding chemotaxis protein compare
HSERO_RS20815 -0.9 -3.0 tRNA methyltransferase compare
HSERO_RS00460 -0.9 -2.8 methionine biosynthesis protein MetW compare
HSERO_RS03145 -0.9 -5.3 poly(A) polymerase compare
HSERO_RS03060 -0.9 -1.3 DNA repair protein compare
HSERO_RS13650 -0.9 -2.9 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS11090 -0.9 -5.8 phosphoribosylglycinamide formyltransferase compare
HSERO_RS13235 -0.9 -3.2 threonine-phosphate decarboxylase compare
HSERO_RS10805 -0.9 -1.2 succinyldiaminopimelate aminotransferase compare
HSERO_RS20125 -0.8 -3.5 hypothetical protein compare
HSERO_RS21375 -0.8 -1.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS21475 -0.8 -1.6 recombinase XerC compare
HSERO_RS02170 -0.8 -2.4 transcriptional regulator compare
HSERO_RS10400 -0.8 -3.4 inorganic phosphate transporter compare
HSERO_RS06395 -0.8 -2.2 DSBA oxidoreductase compare
HSERO_RS23640 -0.8 -2.8 Ni/Fe hydrogenase compare
HSERO_RS07600 -0.8 -3.4 threonine-phosphate decarboxylase compare
HSERO_RS22000 -0.8 -1.3 short-chain dehydrogenase compare
HSERO_RS14930 -0.8 -1.3 aldolase compare
HSERO_RS08015 -0.8 -1.7 MerR family transcriptional regulator compare
HSERO_RS05910 -0.8 -1.2 phosphoribosylglycinamide formyltransferase compare
HSERO_RS20625 -0.8 -1.2 phenylacetate-CoA oxygenase compare
HSERO_RS21575 -0.8 -1.4 transcriptional regulator compare
HSERO_RS06655 -0.8 -1.2 hypothetical protein compare
HSERO_RS06165 -0.8 -3.5 ATP-dependent DNA helicase RecG compare
HSERO_RS08655 -0.8 -0.9 acetolactate synthase compare
HSERO_RS14690 -0.8 -1.9 amino acid ABC transporter periplasmic protein compare
HSERO_RS18280 -0.7 -3.2 anthranilate 1,2-dioxygenase small subunit compare
HSERO_RS18455 -0.7 -1.5 phosphoglycolate phosphatase compare
HSERO_RS16070 -0.7 -1.7 cytochrome biogenesis protein compare
HSERO_RS11265 -0.7 -4.1 GntR family transcriptional regulator compare
HSERO_RS20820 -0.7 -0.7 ABC transporter ATP-binding protein compare
HSERO_RS15835 -0.7 -1.0 aspartate aminotransferase compare
HSERO_RS13675 -0.7 -1.8 histidine kinase compare
HSERO_RS04265 -0.7 -1.2 tyrosine recombinase XerD compare
HSERO_RS13580 -0.7 -3.5 LysR family transcriptional regulator compare
HSERO_RS06465 -0.7 -1.8 cell envelope biogenesis protein OmpA compare
HSERO_RS02475 -0.7 -2.9 tRNA-Gly compare
HSERO_RS09145 -0.7 -2.3 DNA topoisomerase IV subunit A compare
HSERO_RS07410 -0.7 -2.5 LysR family transcriptional regulator compare
HSERO_RS09255 -0.7 -1.2 molybdenum cofactor biosynthesis protein MogA compare
HSERO_RS16535 -0.7 -2.3 hypothetical protein compare
HSERO_RS13645 -0.7 -2.6 membrane protein compare
HSERO_RS22285 -0.7 -1.5 GntR family transcriptional regulator compare
HSERO_RS10085 -0.7 -3.9 transcriptional regulator compare
HSERO_RS15040 -0.7 -3.6 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS05780 -0.7 -3.3 transcriptional regulator compare
HSERO_RS21935 -0.7 -1.0 cytochrome C compare
HSERO_RS09830 -0.7 -2.8 membrane protein compare
HSERO_RS00220 -0.7 -0.7 hypothetical protein compare
HSERO_RS15070 -0.7 -0.8 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS09650 -0.7 -1.0 elongation factor 4 compare
HSERO_RS20630 -0.7 -1.0 phenylacetic acid degradation protein compare
HSERO_RS02350 -0.7 -3.0 diadenosine tetraphosphatase compare
HSERO_RS03045 -0.6 -4.5 HrcA family transcriptional regulator compare
HSERO_RS18265 -0.6 -1.8 ABC transporter permease compare
HSERO_RS08430 -0.6 -2.5 diguanylate cyclase compare
HSERO_RS04270 -0.6 -2.3 membrane protein compare
HSERO_RS12300 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Sodium nitrate in Herbaspirillum seropedicae SmR1

For nitrogen source Sodium nitrate across organisms