Experiment set3IT034 for Caulobacter crescentus NA1000

Compare to:

PYE with Sodium nitrate 100 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01739 +4.2 19.5 LSU ribosomal protein L9P compare
CCNA_01622 +4.2 10.9 Rsh ppGpp hydrolase-synthetase compare
CCNA_00699 +3.9 23.4 LSU ribosomal protein L28P compare
CCNA_01324 +3.7 22.4 LSU ribosomal protein L30P compare
CCNA_01712 +3.7 30.4 CopY/TcrY family transcriptional repressor compare
CCNA_01815 +3.6 25.3 nitrogen assimilation regulatory protein NtrC compare
CCNA_01525 +3.6 19.0 flagellar biosynthesis repressor flbT compare
CCNA_00962 +3.6 19.7 MarR-family transcriptional regulator compare
CCNA_02957 +3.5 11.3 ArsR-family transcriptional regulator compare
CCNA_00846 +3.4 27.1 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03281 +3.4 27.4 AsnC-family transcriptional regulator compare
CCNA_03030 +3.3 23.5 cytochrome c2 compare
CCNA_02416 +3.3 18.3 DNA-binding protein HU compare
CCNA_03064 +3.3 24.3 PadR-family transcriptional regulator compare
CCNA_00518 +3.2 16.1 LSU ribosomal protein L25P compare
CCNA_R0037 +3.1 12.2 tRNA-Glu compare
CCNA_02103 +3.1 21.5 hypothetical protein compare
CCNA_03043 +3.0 10.7 type IV pilin protein pilA compare
CCNA_00752 +3.0 16.8 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_01059 +3.0 27.7 S-layer protein rsaA compare
CCNA_01814 +3.0 19.6 nitrogen regulation protein ntrB compare
CCNA_03012 +2.9 19.3 peroxiredoxin compare
CCNA_02030 +2.9 14.4 hypothetical protein compare
CCNA_02000 +2.9 6.6 SSU ribosomal protein S2P compare
CCNA_03287 +2.9 18.9 PadR-family transcriptional regulator compare
CCNA_03252 +2.9 19.7 CopY/TcrY-family transcriptional regulator compare
CCNA_00013 +2.9 25.0 protein-PII uridylyltransferase compare
CCNA_02026 +2.9 15.9 hypothetical protein compare
CCNA_01751 +2.9 9.6 aminodeoxychorismate lyase compare
CCNA_01361 +2.9 6.7 PepSY superfamily protein compare
CCNA_01790 +2.9 11.1 protein translocase subunit secG compare
CCNA_00257 +2.8 16.1 adenosylhomocysteinase compare
CCNA_01964 +2.8 12.5 NADH dehydrogenase compare
CCNA_02225 +2.8 16.8 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01094 +2.8 6.7 hypothetical protein compare
CCNA_00521 +2.8 8.5 antitoxin protein compare
CCNA_01684 +2.7 14.9 phenylalanine-4-hydroxylase compare
CCNA_02980 +2.7 18.5 tryptophan 2,3-dioxygenase compare
CCNA_03289 +2.7 22.0 HicB-family RNA-binding protein compare
CCNA_01730 +2.7 14.7 amidophosphoribosyltransferase compare
CCNA_01058 +2.7 12.8 helix-turn-helix transcriptional regulator compare
CCNA_00939 +2.7 10.7 MarR-family transcriptional regulator compare
CCNA_01526 +2.6 11.2 flagellar biosynthesis regulatory protein flaF compare
CCNA_01573 +2.6 12.8 ArsR-family transcriptional regulator compare
CCNA_02575 +2.6 7.0 hypothetical protein compare
CCNA_02133 +2.6 11.5 glucokinase compare
CCNA_03280 +2.6 22.4 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01840 +2.6 20.9 MerR-family transcriptional regulator compare
CCNA_02025 +2.6 8.6 hypothetical protein compare
CCNA_02910 +2.6 21.0 TonB-dependent receptor compare
CCNA_02646 +2.6 4.7 cell division protein MraZ compare
CCNA_03951 +2.6 11.1 hypothetical protein compare
CCNA_01603 +2.6 12.9 aspartate aminotransferase compare
CCNA_01453 +2.5 9.0 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00161 +2.5 16.2 hypothetical protein compare
CCNA_02576 +2.5 18.4 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_03989 +2.5 19.2 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01942 +2.5 13.3 Rrf2 family protein compare
CCNA_01801 +2.5 13.4 hypothetical protein compare
CCNA_01931 +2.5 15.8 TetR-family transcriptional regulator compare
CCNA_03325 +2.5 10.6 hypothetical protein compare
CCNA_03271 +2.5 17.1 methionine gamma-lyase compare
CCNA_01802 +2.5 5.1 hypothetical protein compare
CCNA_02732 +2.5 3.6 hypothetical protein compare
CCNA_01186 +2.5 10.4 hypothetical protein compare
CCNA_03352 +2.4 10.9 YebC/PmpR transcriptional regulator compare
CCNA_01804 +2.4 14.2 glutathione peroxidase compare
CCNA_01012 +2.4 5.0 N-formimino-L-glutamate deiminase compare
CCNA_01780 +2.4 16.2 exopolyphosphatase compare
CCNA_03805 +2.4 16.2 PadR-family transcriptional regulator compare
CCNA_03123 +2.4 14.9 ArsR-family transcriptional regulator compare
CCNA_02028 +2.4 4.6 NTF2 superfamily protein compare
CCNA_03062 +2.4 13.6 cell wall hydrolase family protein compare
CCNA_00505 +2.4 11.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02591 +2.4 9.6 glutaredoxin compare
CCNA_02164 +2.4 7.2 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_02021 +2.4 10.3 hypothetical protein compare
CCNA_02616 +2.4 15.7 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01851 +2.4 19.3 quinol cytochrome oxidase polypeptide II compare
CCNA_02617 +2.4 18.4 histidinol-phosphate aminotransferase compare
CCNA_03519 +2.4 15.1 PadR-family transcriptional regulator compare
CCNA_03479 +2.4 14.1 MarR-family transcriptional regulator compare
CCNA_03705 +2.4 5.3 hypothetical protein compare
CCNA_01011 +2.4 11.0 imidazolonepropionase compare
CCNA_00032 +2.4 7.9 antitoxin protein VapB compare
CCNA_03464 +2.4 12.1 glycine cleavage system H protein compare
CCNA_00375 +2.3 7.6 hypothetical protein compare
CCNA_03961 +2.3 12.0 hypothetical protein compare
CCNA_02448 +2.3 11.2 hypothetical protein compare
CCNA_03689 +2.3 16.2 alanine dehydrogenase compare
CCNA_01009 +2.3 13.1 N-formylglutamate deformylase compare
CCNA_00924 +2.3 10.4 MarR/EmrR family transcriptional regulator compare
CCNA_01086 +2.3 14.2 GTP-binding protein lepA compare
CCNA_01913 +2.3 15.4 MarR-family transcriptional regulator compare
CCNA_02151 +2.3 7.9 exodeoxyribonuclease VII small subunit compare
CCNA_01679 +2.3 12.2 succinylglutamic semialdehyde dehydrogenase compare
CCNA_03518 +2.3 17.6 cytochrome c oxidase polypeptide II coxB compare
CCNA_03513 +2.2 11.2 cytochrome c oxidase subunit III coxC compare
CCNA_01848 +2.2 15.7 quinol cytochrome oxidase polypeptide IV compare
CCNA_01655 +2.2 10.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00920 +2.2 7.5 hypothetical protein compare
CCNA_00207 +2.2 13.6 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_02447 +2.2 11.4 PspA/IM30 family regulatory protein compare
CCNA_01181 +2.2 11.6 hypothetical protein compare
CCNA_03811 +2.2 13.5 LysR-family transcriptional regulator compare
CCNA_01742 +2.2 10.2 hypothetical protein compare
CCNA_03643 +2.2 3.1 succinate dehydrogenase membrane anchor subunit compare
CCNA_02250 +2.2 7.0 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_01593 +2.2 14.0 Xaa-pro aminopeptidase compare
CCNA_02328 +2.2 2.3 cell cycle regulatory protein GcrA compare
CCNA_00847 +2.2 9.3 leucine-responsive regulatory protein compare
CCNA_01690 +2.2 8.0 MAPEG family membrane protein compare
CCNA_02368 +2.2 15.0 alpha-glucosidase compare
CCNA_01959 +2.2 5.1 3-dehydroquinate dehydratase compare
CCNA_03420 +2.2 10.6 hypothetical protein compare
CCNA_03031 +2.2 8.9 NlpC/P60 family protein compare
CCNA_02467 +2.1 13.1 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03379 +2.1 4.0 Cro/CI family transcriptional regulator compare
CCNA_00781 +2.1 13.8 two-component receiver protein CpdR compare
CCNA_00945 +2.1 11.5 chemotaxis protein MotD compare
CCNA_03105 +2.1 8.5 DnaJ domain protein compare
CCNA_00562 +2.1 14.1 dihydroorotate dehydrogenase compare
CCNA_02242 +2.1 16.2 PHB granule-associated protein, phasin2 compare
CCNA_00834 +2.1 9.2 flagellin FljM compare
CCNA_01968 +2.1 4.3 pentapeptide repeats containing protein compare
CCNA_03129 +2.1 12.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01624 +2.1 5.8 orotate phosphoribosyltransferase compare
CCNA_03938 +2.1 6.7 hypothetical protein compare
CCNA_00441 +2.1 11.0 chemotaxis receiver domain protein cheYI compare
CCNA_00031 +2.1 10.7 toxin protein VapC compare
CCNA_03936 +2.0 13.0 hypothetical protein compare
CCNA_01528 +2.0 11.7 flagellin fljK compare
CCNA_00447 +2.0 11.5 chemotaxis protein cheD compare
CCNA_00210 +2.0 16.0 TonB-dependent receptor compare
CCNA_02287 +2.0 11.5 TetR-family transcriptional regulator compare
CCNA_00726 +2.0 15.1 acyl-CoA dehydrogenase compare
CCNA_01393 +2.0 13.7 soluble lytic murein transglycosylase compare
CCNA_03108 +2.0 15.8 TonB-dependent outer membrane receptor compare
CCNA_01541 +2.0 13.4 LysR-family transcriptional regulator compare
CCNA_03215 +2.0 13.0 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02339 +2.0 12.3 methyltransferase compare
CCNA_02341 +2.0 12.2 small heat shock protein compare
CCNA_00705 +2.0 5.6 hypothetical protein compare
CCNA_00684 +2.0 12.2 anti-sigma factor, ChrR-family compare
CCNA_01242 +2.0 13.3 amino acid permease compare
CCNA_01008 +2.0 14.9 urocanate hydratase compare
CCNA_02252 +2.0 6.6 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_02004 +2.0 4.0 SOS-induced inhibitor of cell division SidA compare
CCNA_01193 +2.0 15.3 amylosucrase compare
CCNA_00527 +2.0 11.8 hypothetical protein compare
CCNA_01235 +2.0 10.1 AcrR-family transcriptional regulator compare
CCNA_03089 +2.0 10.8 hypothetical protein compare
CCNA_01849 +2.0 13.0 quinol cytochrome oxidase polypeptide III compare
CCNA_01619 +2.0 10.1 NYN domain protein compare
CCNA_00675 +2.0 9.3 VapC-like PIN domain ribonuclease compare
CCNA_03954 +2.0 2.4 hypothetical protein compare
CCNA_00803 +1.9 7.8 chemotaxis protein cheW compare
CCNA_03959 +1.9 1.7 hypothetical protein compare
CCNA_00448 +1.9 11.1 cheU protein compare
CCNA_02805 +1.9 7.8 hypothetical protein compare
CCNA_03372 +1.9 6.0 bacterioferritin-associated ferredoxin compare
CCNA_03354 +1.9 7.1 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_00998 +1.9 8.6 ROS/MUCR transcriptional regulator compare
CCNA_00947 +1.9 14.4 flagellar hook protein FlgE compare
CCNA_00392 +1.9 13.4 dihydroorotase compare
CCNA_03514 +1.9 12.6 cytochrome c oxidase assembly protein ctaG compare
CCNA_01979 +1.9 7.0 LexA repressor compare
CCNA_03260 +1.9 9.3 queuosine biosynthesis protein QueD compare
CCNA_02836 +1.9 8.9 hypothetical protein compare
CCNA_03893 +1.9 5.4 hypothetical protein compare
CCNA_00400 +1.9 9.4 MarR/EmrR-family transcriptional regulator compare
CCNA_03688 +1.9 11.4 AsnC-family transcriptional regulator compare
CCNA_02663 +1.9 4.0 DnaK suppressor protein DksA compare
CCNA_02475 +1.9 13.8 transcriptional regulator vanR compare
CCNA_00944 +1.9 10.3 flagellar hook length determination protein compare
CCNA_01681 +1.9 7.2 RimI-like acetyltransferase compare
CCNA_01406 +1.9 7.8 metal-dependent hydrolase compare
CCNA_01608 +1.9 8.8 TetR-family transcriptional regulator compare
CCNA_01505 +1.9 4.3 hypothetical protein compare
CCNA_02619 +1.8 13.0 stomatin/prohibitin-related protein compare
CCNA_02330 +1.8 8.8 hypothetical protein compare
CCNA_00206 +1.8 5.9 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
CCNA_03475 +1.8 6.8 homoserine kinase compare
CCNA_00352 +1.8 10.7 integral membrane protein compare
CCNA_02367 +1.8 12.3 CelR-family transcriptional regulator compare
CCNA_02586 +1.8 12.0 phosphoribosylformylglycinamidine synthase II compare
CCNA_01680 +1.8 11.5 succinylarginine dihydrolase compare
CCNA_03132 +1.8 8.5 transcriptional regulator, antitoxin protein higA compare
CCNA_01020 +1.8 9.7 LacI-family transcriptional regulator compare
CCNA_03612 +1.8 12.3 HTH XRE-family transcriptional regulator compare
CCNA_03964 +1.8 3.0 hypothetical protein compare
CCNA_02073 +1.8 5.4 cupin domain transcriptional regulator compare
CCNA_02728 +1.8 9.3 hypothetical protein compare
CCNA_01813 +1.8 9.7 tRNA-dihydrouridine synthase compare
CCNA_01629 +1.8 9.2 signal peptidase I compare
CCNA_02546 +1.8 12.7 GGDEF/response regulator protein PleD compare
CCNA_01850 +1.8 14.7 quinol cytochrome oxidase polypeptide I compare
CCNA_01678 +1.8 8.9 arginine N-succinyltransferase, beta chain compare
CCNA_01339 +1.8 6.8 ArsR-family transcriptional regulator compare
CCNA_02976 +1.8 7.7 MCP-signal associated domain protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrate in Caulobacter crescentus NA1000

For stress Sodium nitrate across organisms