Experiment set3IT034 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Pectin carbon source

200 most important genes:

  gene name fitness t score description  
BT3933 -4.4 -5.3 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT2401 -3.9 -6.5 threonine synthase (NCBI ptt file) compare
BT1607 -3.8 -3.7 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT2402 -3.8 -8.9 homoserine phosphotransferase HomK (from data) compare
BT2403 -3.8 -6.3 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2074 -3.7 -8.0 ketol-acid reductoisomerase (NCBI ptt file) compare
BT2078 -3.6 -10.3 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3320 -3.5 -6.3 dihydrodipicolinate reductase (NCBI ptt file) compare
BT3757 -3.5 -7.1 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT1859 -3.5 -2.4 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT1374 -3.5 -4.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT0892 -3.5 -2.4 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT2415 -3.4 -10.0 aspartate aminotransferase (NCBI ptt file) compare
BT0531 -3.4 -2.3 anthranilate synthase component II (NCBI ptt file) compare
BT1153 -3.3 -4.0 phosphoserine aminotransferase (NCBI ptt file) compare
BT1843 -3.3 -7.1 adenylosuccinate synthetase (NCBI ptt file) compare
BT1861 -3.3 -4.5 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3253 -3.3 -2.3 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT_2008 -3.2 -2.0 hypothetical protein (RefSeq) compare
BT3981 -3.2 -3.1 hypothetical protein (NCBI ptt file) compare
BT2076 -3.1 -7.5 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0532 -3.1 -3.7 anthranilate synthase component I (NCBI ptt file) compare
BT1857 -3.1 -6.9 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT0530 -3.1 -3.7 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3719 -3.0 -4.1 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT1380 -3.0 -2.1 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT3197 -3.0 -2.0 hypothetical protein (NCBI ptt file) compare
BT2077 -3.0 -6.6 acetolactate synthase large subunit (NCBI ptt file) compare
BT3733 -2.9 -11.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT1378 -2.9 -2.8 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0527 -2.9 -3.4 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3918 -2.9 -3.1 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT4028 -2.8 -1.6 hypothetical protein (NCBI ptt file) compare
BT1858 -2.8 -6.4 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT1860 -2.8 -3.8 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT3936 -2.8 -2.7 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT2080 -2.7 -3.2 L-cysteine desulfidase cdsB (from data) compare
BT3758 -2.7 -4.1 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT3718 -2.7 -9.6 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT1152 -2.6 -3.1 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT0825 -2.6 -1.8 altronate oxidoreductase (NCBI ptt file) compare
BT0891 -2.6 -1.8 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0738 -2.6 -3.1 serine hydroxymethyltransferase (NCBI ptt file) compare
BT4211 -2.6 -1.8 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1747 -2.6 -4.2 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT3549 -2.5 -6.2 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT2932 -2.5 -2.4 transcriptional regulator (NCBI ptt file) compare
BT3760 -2.5 -5.7 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT3395 -2.5 -7.4 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT1443 -2.4 -4.4 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT1376 -2.4 -2.8 putative ATP-binding protein involved in cell division (NCBI ptt file) compare
BT2837 -2.4 -12.0 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT3164 -2.4 -7.4 quinolinate synthetase A (NCBI ptt file) compare
BT4644 -2.3 -2.8 putative anti-sigma factor (NCBI ptt file) compare
BT3759 -2.3 -7.4 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1746 -2.3 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT3184 -2.3 -13.2 L-aspartate oxidase (NCBI ptt file) compare
BT0782 -2.3 -1.7 hypothetical protein (NCBI ptt file) compare
BT1221 -2.3 -2.2 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT0972 -2.3 -2.2 putative oxidoreductase (NCBI ptt file) compare
BT0528 -2.3 -4.4 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT3361 -2.3 -7.0 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT2836 -2.3 -13.9 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT0529 -2.3 -2.2 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT4102 -2.3 -2.2 putative Sec-independent protein translocase (NCBI ptt file) compare
BT1379 -2.2 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT1844 -2.2 -4.7 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT0490 -2.2 -1.5 hypothetical protein (NCBI ptt file) compare
BT1222 -2.2 -1.5 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT1270 -2.2 -4.2 putative Na+/H+ antiporter (NCBI ptt file) compare
BT4191 -2.2 -8.7 hypothetical protein (NCBI ptt file) compare
BT1377 -2.2 -3.9 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT2471 -2.2 -3.4 hypothetical protein (NCBI ptt file) compare
BT1445 -2.2 -3.9 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT0501 -2.2 -2.1 hypothetical protein (NCBI ptt file) compare
BT1733 -2.2 -3.6 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT0231 -2.1 -2.0 excisionase (NCBI ptt file) compare
BT2142 -2.1 -1.4 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT3935 -2.0 -3.9 aminotransferase (NCBI ptt file) compare
BT1446 -2.0 -6.6 dethiobiotin synthetase (NCBI ptt file) compare
BT3717 -2.0 -5.2 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1375 -2.0 -9.1 aspartokinase (NCBI ptt file) compare
BT0869 -2.0 -1.9 hypothetical protein (NCBI ptt file) compare
BT0533 -2.0 -2.7 tryptophan synthase beta chain (NCBI ptt file) compare
BT0429 -1.9 -2.5 indolepyruvate oxidoreductase subunit iorB (NCBI ptt file) compare
BT2646 -1.9 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT1970 -1.9 -7.7 glutamate dehydrogenase (NCBI ptt file) compare
BT4249 -1.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT0740 -1.9 -1.5 flavoredoxin (NCBI ptt file) compare
BT4098 -1.9 -1.3 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT4271 -1.8 -2.8 hypothetical protein (NCBI ptt file) compare
BT1104 -1.8 -0.9 small heat shock protein (NCBI ptt file) compare
BT3737 -1.8 -1.6 hypothetical protein (NCBI ptt file) compare
BT1561 -1.8 -1.4 hypothetical protein (NCBI ptt file) compare
BT1058 -1.8 -7.8 two-component system sensor histidine kinase (NCBI ptt file) compare
BT4421 -1.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT_0823 -1.8 -3.4 glucuronate isomerase (RefSeq) compare
BT1476 -1.8 -3.4 aspartate aminotransferase (NCBI ptt file) compare
BT2045 -1.8 -1.6 hypothetical protein (NCBI ptt file) compare
BT1849 -1.7 -1.8 hypothetical protein (NCBI ptt file) compare
BT1220 -1.7 -1.7 6-phosphogluconolactonase (NCBI ptt file) compare
BT1444 -1.7 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1583 -1.7 -1.6 putative protein disulfide isomerase (NCBI ptt file) compare
BT0203 -1.7 -2.3 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0967 -1.7 -1.6 hypothetical protein (NCBI ptt file) compare
BT3394 -1.7 -7.3 putative arginine decarboxylase (NCBI ptt file) compare
BT1951 -1.7 -2.0 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT0902 -1.7 -2.2 hypothetical protein (NCBI ptt file) compare
BT3761 -1.6 -4.5 N-succinylglutamate synthase (from data) compare
BT4551 -1.6 -2.1 putative GTPase, ThdF family (NCBI ptt file) compare
BT0201 -1.6 -3.5 histidinol dehydrogenase (NCBI ptt file) compare
BT4699 -1.6 -2.1 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT1381 -1.5 -4.2 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT0200 -1.5 -3.0 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT4449 -1.5 -3.0 putative dehydrogenase (NCBI ptt file) compare
BT1667 -1.5 -1.4 hypothetical protein (NCBI ptt file) compare
BT0202 -1.5 -4.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT1804 -1.5 -2.6 electron transfer flavoprotein beta-subunit (NCBI ptt file) compare
BT0477 -1.5 -1.4 putative phosphatase (NCBI ptt file) compare
BT2299 -1.4 -1.7 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1535 -1.4 -1.6 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT4649 -1.4 -1.6 hypothetical protein (NCBI ptt file) compare
BT2281 -1.4 -1.6 hypothetical protein (NCBI ptt file) compare
BT1363 -1.4 -1.8 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT4339 -1.4 -2.3 glutamine synthetase (NCBI ptt file) compare
BT0173 -1.4 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1142 -1.4 -2.1 hypothetical protein (NCBI ptt file) compare
BT2042 -1.4 -1.7 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT1442 -1.4 -4.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT3182 -1.4 -5.6 rubrerythrin (NCBI ptt file) compare
BT0800 -1.4 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1402 -1.4 -2.4 iron-sulfur flavoprotein (NCBI ptt file) compare
BT1161 -1.4 -2.4 putative aminopeptidase C (NCBI ptt file) compare
BT2994 -1.3 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT3193 -1.3 -7.4 putative coenzyme A transferase (NCBI ptt file) compare
BT2853 -1.3 -1.5 hypothetical protein (NCBI ptt file) compare
BT3845 -1.3 -1.8 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT0337 -1.3 -1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0790 -1.3 -2.4 phosphomethylpyrimidine kinase (NCBI ptt file) compare
BT0015 -1.3 -2.1 rteB, two-component system response regulator (NCBI ptt file) compare
BT0486 -1.3 -5.3 altronate hydrolase (NCBI ptt file) compare
BT0462 -1.2 -2.2 putative transcriptional regulator (NCBI ptt file) compare
BT0481 -1.2 -1.9 polysaccharide export outer membrane protein (NCBI ptt file) compare
BT0922 -1.2 -2.6 hypothetical protein (NCBI ptt file) compare
BT0122 -1.2 -2.5 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file) compare
BT4105 -1.2 -6.4 D-galacturonate transporter ExuT (from data) compare
BT3980 -1.2 -1.2 hypothetical protein (NCBI ptt file) compare
BT2344 -1.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT1065 -1.2 -1.1 hypothetical protein (NCBI ptt file) compare
BT0619 -1.2 -2.2 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT0370 -1.2 -3.1 galactokinase (NCBI ptt file) compare
BT0736 -1.2 -2.0 putative transport protein (NCBI ptt file) compare
BT1114 -1.1 -3.0 conserved hypothetical protein (NCBI ptt file) compare
BT4593 -1.1 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0353 -1.1 -2.9 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT1526 -1.1 -2.5 myo-inositol-1-phosphate synthase (NCBI ptt file) compare
BT4017 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT2687 -1.1 -3.8 cation efflux system protein (NCBI ptt file) compare
BT4454 -1.1 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4003 -1.1 -2.0 stationary-phase survival protein SurE (NCBI ptt file) compare
BT1168 -1.1 -1.6 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT1944 -1.1 -1.5 putative transposase (NCBI ptt file) compare
BT1684 -1.1 -3.9 conserved hypothetical protein (NCBI ptt file) compare
BT4733 -1.1 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT2815 -1.1 -2.5 putative mutT family protein (NCBI ptt file) compare
BT1576 -1.1 -1.3 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT0215 -1.1 -0.9 iron uptake regulatory protein (NCBI ptt file) compare
BT2605 -1.1 -2.0 hypothetical protein (NCBI ptt file) compare
BT1201 -1.1 -1.0 conserved hypothetical protein (NCBI ptt file) compare
BT1991 -1.1 -2.3 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT1304 -1.1 -1.0 putative transcriptional regulator (NCBI ptt file) compare
BT1609 -1.1 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1845 -1.1 -1.6 conserved hypothetical protein (NCBI ptt file) compare
BT3762 -1.1 -3.0 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT0777 -1.1 -1.6 hypothetical protein (NCBI ptt file) compare
BT2487 -1.1 -1.3 hypothetical protein (NCBI ptt file) compare
BT0817 -1.1 -1.4 lipoprotein, function unknown (NCBI ptt file) compare
BT3912 -1.1 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT3191 -1.1 -2.6 hypothetical protein (NCBI ptt file) compare
BT1022 -1.1 -1.7 hypothetical protein (NCBI ptt file) compare
BT0372 -1.1 -2.3 aldose 1-epimerase precursor (NCBI ptt file) compare
BT1052 -1.0 -2.5 putative anti-sigma factor (NCBI ptt file) compare
p5482_02 -1.0 -2.9 hypothetical protein (NCBI) compare
BT4774 -1.0 -1.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1154 -1.0 -1.0 ATP-independent RNA helicase (NCBI ptt file) compare
BT0397 -1.0 -0.9 conserved hypothetical protein (NCBI ptt file) compare
BT2093 -1.0 -1.8 hypothetical protein (NCBI ptt file) compare
BT0298 -1.0 -1.8 cation efflux system protein (outer membrane protein) (NCBI ptt file) compare
BT1915 -1.0 -3.5 pyruvate carboxylase subunit A (NCBI ptt file) compare
BT1267 -1.0 -1.8 outer membrane protein (NCBI ptt file) compare
BT0900 -1.0 -1.5 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT0322 -1.0 -1.9 putative oxidoreductase (NCBI ptt file) compare
BT1594 -1.0 -2.3 putative ferredoxin (NCBI ptt file) compare
BT1070 -1.0 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT2449 -1.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT0885 -1.0 -1.3 putative cation efflux pump (NCBI ptt file) compare
BT1055 -1.0 -1.6 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT0151 -1.0 -0.9 hypothetical protein (NCBI ptt file) compare
BT1945 -1.0 -2.1 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1313 -1.0 -1.6 muconate cycloisomerase (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Pectin in Bacteroides thetaiotaomicron VPI-5482

For carbon source Pectin across organisms