Experiment set3IT033 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with 1-ethyl-3-methylimidazolium lysine 5 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2339 -2.9 -2.8 COG1872 compare
Pf1N1B4_2005 -2.9 -2.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_769 -2.9 -7.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3168 -2.7 -4.0 AmpG permease compare
Pf1N1B4_1958 -2.3 -2.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2791 -2.1 -2.8 Putative inner membrane protein (Fragment) compare
Pf1N1B4_1451 -2.0 -4.7 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf1N1B4_3997 -1.9 -4.8 Uncharacterized protein YtfM precursor compare
Pf1N1B4_3779 -1.9 -3.4 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_724 -1.8 -3.9 DNA-binding response regulator ColR compare
Pf1N1B4_1691 -1.8 -2.1 hypothetical protein compare
Pf1N1B4_866 -1.8 -2.1 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3325 -1.7 -2.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_2491 -1.7 -3.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_1057 -1.7 -2.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2224 -1.7 -2.4 FIG00953390: hypothetical protein compare
Pf1N1B4_609 -1.7 -3.0 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_615 -1.7 -2.6 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_399 -1.6 -2.7 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_644 -1.6 -2.3 Cold shock protein CspC compare
Pf1N1B4_2106 -1.6 -2.8 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3143 -1.6 -2.9 RecA protein compare
Pf1N1B4_4960 -1.6 -2.6 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_1008 -1.5 -1.7 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_1403 -1.5 -6.4 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2856 -1.5 -3.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5498 -1.5 -2.1 hypothetical protein compare
Pf1N1B4_2949 -1.5 -2.3 FIG00956396: hypothetical protein compare
Pf1N1B4_2004 -1.5 -2.0 putative membrane protein compare
Pf1N1B4_2232 -1.4 -4.3 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_3390 -1.4 -2.4 RNA polymerase sigma factor RpoE compare
Pf1N1B4_2150 -1.4 -2.4 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_2886 -1.4 -8.1 Paraquat-inducible protein B compare
Pf1N1B4_3885 -1.4 -4.0 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_5095 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_184 -1.3 -3.3 Chromosome initiation inhibitor compare
Pf1N1B4_3631 -1.3 -3.7 Flagellar motor rotation protein MotA compare
Pf1N1B4_2284 -1.3 -4.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_6004 -1.3 -4.3 tgtA5 cluster protein 1 compare
Pf1N1B4_5628 -1.3 -2.9 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_1463 -1.3 -6.1 hypothetical protein compare
Pf1N1B4_2488 -1.3 -5.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_3413 -1.3 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_5645 -1.3 -2.8 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_2377 -1.3 -4.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_3998 -1.3 -4.1 putative exported protein compare
Pf1N1B4_2228 -1.3 -3.3 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_5512 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_606 -1.2 -2.4 Iron siderophore sensor protein compare
Pf1N1B4_5823 -1.2 -1.6 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_5812 -1.2 -2.6 FIG00955248: hypothetical protein compare
Pf1N1B4_53 -1.2 -4.2 hypothetical protein compare
Pf1N1B4_4448 -1.2 -2.4 COGs COG2343 compare
Pf1N1B4_5010 -1.2 -3.5 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_5859 -1.2 -2.6 Glutamate carboxypeptidase (EC 3.4.17.11) compare
Pf1N1B4_2487 -1.2 -5.8 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1781 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_5834 -1.2 -1.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_3484 -1.2 -3.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_1827 -1.2 -3.1 FIG00953482: hypothetical protein compare
Pf1N1B4_2359 -1.2 -2.6 Chemotaxis signal transduction protein compare
Pf1N1B4_188 -1.1 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1756 -1.1 -2.4 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_3869 -1.1 -7.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_5995 -1.1 -1.5 Transporter, MFS superfamily compare
Pf1N1B4_1103 -1.1 -2.6 Rare lipoprotein A compare
Pf1N1B4_2249 -1.1 -2.4 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf1N1B4_1568 -1.1 -2.9 Twin-arginine translocation protein TatB compare
Pf1N1B4_2885 -1.1 -4.0 Paraquat-inducible protein A compare
Pf1N1B4_2453 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_1128 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_4296 -1.1 -3.2 Histidine transporter, periplasmic histidine-binding protein compare
Pf1N1B4_4906 -1.1 -4.0 Lipase (EC 3.1.1.3) compare
Pf1N1B4_2794 -1.1 -2.0 FIG00953595: hypothetical protein compare
Pf1N1B4_1317 -1.1 -2.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_5721 -1.1 -2.2 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5377 -1.1 -3.1 Uncharacterized domain COG3236 / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_4083 -1.1 -3.0 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_3722 -1.1 -1.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2208 -1.1 -4.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1617 -1.0 -5.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3742 -1.0 -1.4 Oxidoreductase, zinc-binding compare
Pf1N1B4_4849 -1.0 -2.0 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2845 -1.0 -3.1 FIG00953066: hypothetical protein compare
Pf1N1B4_3917 -1.0 -2.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3547 -1.0 -1.5 DNA-binding response regulator compare
Pf1N1B4_322 -1.0 -2.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_1042 -1.0 -1.7 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_3713 -1.0 -1.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_2213 -1.0 -2.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_967 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_2105 -1.0 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_883 -1.0 -1.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2823 -1.0 -1.3 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_103 -1.0 -3.3 Histidine permease YuiF compare
Pf1N1B4_4918 -1.0 -1.7 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_567 -1.0 -2.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_2783 -1.0 -1.7 Transcription elongation factor GreB-related protein compare
Pf1N1B4_5554 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_5448 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_5346 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_2490 -1.0 -3.5 Biotin synthesis protein BioC compare
Pf1N1B4_3559 -1.0 -6.9 Aromatic amino acid transport protein AroP compare
Pf1N1B4_3572 -1.0 -2.9 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf1N1B4_3195 -1.0 -4.5 hydrolase, putative compare
Pf1N1B4_5957 -1.0 -1.9 Arsenical resistance operon repressor compare
Pf1N1B4_139 -1.0 -2.0 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_4962 -1.0 -2.8 C4-dicarboxylate transport protein compare
Pf1N1B4_1295 -1.0 -3.0 hypothetical protein compare
Pf1N1B4_2322 -0.9 -1.5 FIG015547: peptidase, M16 family compare
Pf1N1B4_2006 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_3871 -0.9 -6.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_974 -0.9 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4699 -0.9 -1.6 Multidrug translocase MdfA compare
Pf1N1B4_2695 -0.9 -1.4 Rare lipoprotein A precursor compare
Pf1N1B4_419 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_1264 -0.9 -3.5 Integral membrane efflux protein compare
Pf1N1B4_3260 -0.9 -2.0 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_823 -0.9 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_890 -0.9 -2.0 DNA recombination and repair protein RecO compare
Pf1N1B4_3795 -0.9 -1.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_5675 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_1630 -0.9 -2.4 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
Pf1N1B4_619 -0.9 -1.3 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_5884 -0.9 -2.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_835 -0.9 -2.0 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_239 -0.9 -2.3 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_5822 -0.9 -3.7 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B compare
Pf1N1B4_3870 -0.9 -7.3 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_4441 -0.9 -1.4 Cyanate hydratase (EC 4.2.1.104) compare
Pf1N1B4_69 -0.9 -1.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1845 -0.9 -2.2 FIG00954395: hypothetical protein compare
Pf1N1B4_4952 -0.9 -1.9 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_4247 -0.9 -2.5 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_3627 -0.9 -1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_3382 -0.9 -2.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
Pf1N1B4_1307 -0.9 -1.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_204 -0.9 -2.2 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_3536 -0.9 -2.4 SelT/selW/selH selenoprotein domain compare
Pf1N1B4_2534 -0.9 -1.5 DnaJ-like protein DjlA compare
Pf1N1B4_1569 -0.9 -6.1 Twin-arginine translocation protein TatC compare
Pf1N1B4_5279 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_2021 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_1461 -0.9 -2.0 Protein fixF compare
Pf1N1B4_5074 -0.9 -1.5 Gluconate permease compare
Pf1N1B4_1676 -0.9 -3.0 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_1464 -0.9 -4.3 Glycosyl transferase compare
Pf1N1B4_5973 -0.9 -1.8 Probable permease of ABC transporter compare
Pf1N1B4_1869 -0.8 -4.0 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_2959 -0.8 -3.0 FIG067310: hypothetical protein compare
Pf1N1B4_2458 -0.8 -2.0 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_1927 -0.8 -4.3 DNA recombination and repair protein RecF compare
Pf1N1B4_4797 -0.8 -2.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3272 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_4777 -0.8 -1.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_888 -0.8 -2.7 Transglycosylase, Slt family compare
Pf1N1B4_2866 -0.8 -1.8 Periplasmic hemin-binding protein compare
Pf1N1B4_583 -0.8 -1.7 FIG00957748: hypothetical protein compare
Pf1N1B4_4480 -0.8 -1.5 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Pf1N1B4_5853 -0.8 -2.2 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_1683 -0.8 -1.2 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_437 -0.8 -3.6 hypothetical protein compare
Pf1N1B4_5124 -0.8 -2.2 two component transcriptional regulator, LuxR family compare
Pf1N1B4_4627 -0.8 -1.7 FIG00957600: hypothetical protein compare
Pf1N1B4_1266 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_124 -0.8 -1.2 Mechanosensitive ion channel compare
Pf1N1B4_765 -0.8 -1.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_104 -0.8 -2.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_4404 -0.8 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_5768 -0.8 -1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_4518 -0.8 -1.4 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_1366 -0.8 -2.1 FMN-dependent NADH-azoreductase compare
Pf1N1B4_3793 -0.8 -2.2 COG2010: Cytochrome c, mono- and diheme variants compare
Pf1N1B4_4067 -0.8 -2.7 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf1N1B4_800 -0.8 -3.5 OpgC protein compare
Pf1N1B4_3129 -0.8 -1.3 Prophage baseplate assembly protein V compare
Pf1N1B4_875 -0.8 -1.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5435 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_246 -0.8 -2.7 Probable transmembrane protein compare
Pf1N1B4_1153 -0.8 -2.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1411 -0.8 -2.1 GTP-binding protein HflX compare
Pf1N1B4_1608 -0.8 -1.1 FIG00956533: hypothetical protein compare
Pf1N1B4_4531 -0.8 -1.6 FIG01221261: hypothetical protein compare
Pf1N1B4_3833 -0.8 -4.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3356 -0.8 -0.9 Cyclic nucleotide-binding protein compare
Pf1N1B4_2048 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_345 -0.8 -1.2 Integration host factor beta subunit compare
Pf1N1B4_3056 -0.8 -2.0 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_4139 -0.7 -1.3 Transcriptional regulator, MerR family compare
Pf1N1B4_3364 -0.7 -1.6 Cyn operon transcriptional activator compare
Pf1N1B4_3538 -0.7 -1.3 Transcriptional regulator, AraC family compare
Pf1N1B4_3334 -0.7 -2.3 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_5073 -0.7 -1.8 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_3200 -0.7 -1.8 Outer membrane lipoprotein compare
Pf1N1B4_5107 -0.7 -1.1 Putative collagenase compare
Pf1N1B4_2061 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_4550 -0.7 -1.4 beta-ketoacyl synthase, putative compare
Pf1N1B4_716 -0.7 -1.8 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_26 -0.7 -3.6 Excinuclease ABC subunit B compare
Pf1N1B4_126 -0.7 -1.6 Pirin compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress 1-ethyl-3-methylimidazolium lysine across organisms