Experiment set3IT033 for Caulobacter crescentus NA1000

PYE with Sodium nitrite 5 mM

Group: stress
Media: PYE + Sodium nitrite (5 mM)
Culturing: Caulo_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.2 generations
By: Adam on 1-May-17
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate, 0.5 mM Calcium chloride
Growth plate: 1708 A3

Specific Phenotypes

For 33 genes in this experiment

For stress Sodium nitrite in Caulobacter crescentus NA1000

For stress Sodium nitrite across organisms

SEED Subsystems

Subsystem	#Specific
Flagellum	2
Bacterial Chemotaxis	1
DNA-replication	1
DNA repair, bacterial	1
Flagellar motility	1
Flagellum in Campylobacter	1
Iron acquisition in Vibrio	1
Isobutyryl-CoA to Propionyl-CoA Module	1
Teichoic and lipoteichoic acids biosynthesis	1
Transport of Iron	1
Valine degradation	1
Widespread colonization island	1
p-Aminobenzoyl-Glutamate Utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fructose and mannose metabolism
• Valine, leucine and isoleucine degradation
• N-Glycan biosynthesis
• O-Glycan biosynthesis
• High-mannose type N-glycan biosynthesis
• O-Mannosyl glycan biosynthesis
• Keratan sulfate biosynthesis
• Lipopolysaccharide biosynthesis
• Peptidoglycan biosynthesis
• Glycerolipid metabolism
• Inositol phosphate metabolism
• Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
• Sphingolipid metabolism
• Glycosphingolipid biosynthesis - lacto and neolacto series
• Glycosphingolipid biosynthesis - globo series
• Glycosphingolipid biosynthesis - ganglio series
• Propanoate metabolism
• Carotenoid biosynthesis - General
• Zeatin biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Flavone and flavonol biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
β-alanine degradation II	2	2	1
β-alanine degradation I	2	1	1
propanoyl-CoA degradation II	5	3	1
acrylate degradation I	5	3	1
Salmonella enterica serotype O:54 O antigen biosynthesis	5	1	1
myo-inositol degradation I	7	7	1
2,4-dinitrotoluene degradation	7	1	1
L-valine degradation I	8	5	1
myo-, chiro- and scyllo-inositol degradation	10	7	1
poly(3-O-β-D-glucopyranosyl-N-acetylgalactosamine 1-phosphate) wall teichoic acid biosynthesis	10	1	1
poly(glycerol phosphate) wall teichoic acid biosynthesis	11	1	1
poly(ribitol phosphate) wall teichoic acid biosynthesis I (B. subtilis)	12	1	1
poly(ribitol phosphate) wall teichoic acid biosynthesis II (S. aureus)	14	1	1