Experiment set3IT033 for Ralstonia sp. UNC404CL21Col

Compare to:

no_plant_soil sample 3; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.5 -5.2 NUDIX domain-containing protein compare
ABZR87_RS01255 -7.1 -17.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS14505 -7.0 -4.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS13250 -6.8 -4.7 phosphoserine phosphatase SerB compare
ABZR87_RS08630 -6.7 -4.6 dihydroorotase compare
ABZR87_RS01240 -6.6 -4.6 catalase/peroxidase HPI compare
ABZR87_RS01810 -6.3 -4.4 glutamate 5-kinase compare
ABZR87_RS02160 -6.3 -6.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02595 -6.2 -11.7 shikimate kinase compare
ABZR87_RS14500 -6.1 -13.7 tryptophan synthase subunit beta compare
ABZR87_RS11140 -6.0 -3.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS02155 -6.0 -9.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS02145 -5.9 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02570 -5.9 -25.3 glutamate synthase-related protein compare
ABZR87_RS02140 -5.8 -20.2 anthranilate synthase component I compare
ABZR87_RS14535 -5.8 -4.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02655 -5.8 -12.0 anti-sigma factor compare
ABZR87_RS02590 -5.7 -10.2 3-dehydroquinate synthase compare
ABZR87_RS05200 -5.6 -18.5 homoserine O-acetyltransferase compare
ABZR87_RS20875 -5.5 -8.4 LysR family transcriptional regulator compare
ABZR87_RS02640 -5.5 -16.5 diaminopimelate decarboxylase compare
ABZR87_RS20880 -5.5 -9.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS05305 -5.5 -13.2 TetR family transcriptional regulator compare
ABZR87_RS13790 -5.4 -9.0 chorismate synthase compare
ABZR87_RS07380 -5.3 -13.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02565 -5.3 -6.8 glutamate synthase subunit beta compare
ABZR87_RS14490 -5.3 -8.2 tryptophan synthase subunit alpha compare
ABZR87_RS15805 -5.3 -8.9 IclR family transcriptional regulator compare
ABZR87_RS02445 -5.3 -3.6 Sec-independent protein translocase protein TatB compare
ABZR87_RS14115 -5.3 -4.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS02550 -5.2 -3.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS14540 -5.1 -7.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS22970 -5.0 -11.6 cystathionine gamma-synthase family protein compare
ABZR87_RS16720 -5.0 -3.0 collagen-like triple helix repeat-containing protein compare
ABZR87_RS09465 -4.9 -7.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02380 -4.9 -12.3 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14530 -4.8 -8.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS13475 -4.8 -5.7 PAS domain S-box protein compare
ABZR87_RS05100 -4.8 -6.5 RNA polymerase-binding protein DksA compare
ABZR87_RS02385 -4.7 -7.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS09450 -4.7 -9.5 prephenate dehydratase compare
ABZR87_RS08695 -4.6 -17.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS16735 -4.6 -15.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS02535 -4.6 -3.1 phospholipid-binding protein MlaC compare
ABZR87_RS02440 -4.5 -8.1 twin-arginine translocase subunit TatC compare
ABZR87_RS00435 -4.5 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS02545 -4.5 -6.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS02375 -4.4 -11.8 cytochrome c1 compare
ABZR87_RS13705 -4.4 -2.8 integration host factor subunit alpha compare
ABZR87_RS17310 -4.4 -6.8 PadR family transcriptional regulator compare
ABZR87_RS04865 -4.4 -3.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS07005 -4.3 -3.0 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS06495 -4.3 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS02555 -4.1 -5.6 ABC transporter ATP-binding protein compare
ABZR87_RS10195 -4.1 -4.0 signal peptidase I compare
ABZR87_RS07050 -4.1 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16170 -4.1 -2.8 argininosuccinate lyase compare
ABZR87_RS08970 -4.1 -10.2 protein TolQ compare
ABZR87_RS04975 -4.0 -3.9 peptide deformylase compare
ABZR87_RS12785 -4.0 -2.7 endopeptidase La compare
ABZR87_RS14965 -3.9 -4.6 DUF3619 family protein compare
ABZR87_RS08985 -3.8 -14.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS04940 -3.8 -4.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08795 -3.7 -5.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS22920 -3.7 -7.3 phosphogluconate dehydratase compare
ABZR87_RS07035 -3.6 -7.4 RNase adapter RapZ compare
ABZR87_RS07510 -3.6 -6.0 LysR family transcriptional regulator compare
ABZR87_RS01645 -3.6 -4.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS09445 -3.6 -9.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS16960 -3.6 -4.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00360 -3.5 -3.4 acyl-CoA desaturase compare
ABZR87_RS13285 -3.5 -11.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS08990 -3.4 -7.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS10170 -3.3 -6.4 RseA family anti-sigma factor compare
ABZR87_RS06705 -3.2 -13.8 glutamate--cysteine ligase compare
ABZR87_RS02540 -3.2 -7.7 VacJ family lipoprotein compare
ABZR87_RS07625 -3.2 -2.2 Holliday junction branch migration protein RuvA compare
ABZR87_RS10980 -3.2 -1.6 tRNA-Leu compare
ABZR87_RS09515 -3.1 -3.0 cysteine synthase CysM compare
ABZR87_RS08700 -3.1 -10.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS03565 -3.1 -9.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01245 -3.1 -2.1 Dps family protein compare
ABZR87_RS11940 -3.1 -2.1 SsrA-binding protein SmpB compare
ABZR87_RS09935 -3.1 -2.1 amino acid aminotransferase compare
ABZR87_RS16055 -3.0 -6.8 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS07965 -3.0 -6.1 recombinase RecA compare
ABZR87_RS02850 -3.0 -3.5 elongation factor Tu compare
ABZR87_RS07360 -3.0 -9.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS10120 -2.9 -1.7 YceD family protein compare
ABZR87_RS00875 -2.9 -4.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS05065 -2.9 -3.9 tyrosine recombinase XerC compare
ABZR87_RS06745 -2.9 -6.7 S41 family peptidase compare
ABZR87_RS08625 -2.9 -2.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS09615 -2.9 -1.7 50S ribosomal protein L19 compare
ABZR87_RS13645 -2.9 -1.5 hypothetical protein compare
ABZR87_RS21285 -2.8 -2.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03440 -2.8 -5.9 type II secretion system protein GspM compare
ABZR87_RS01615 -2.7 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS14950 -2.7 -1.8 acetolactate synthase small subunit compare
ABZR87_RS22690 -2.6 -2.9 XRE family transcriptional regulator compare
ABZR87_RS06845 -2.6 -8.9 heme o synthase compare
ABZR87_RS00185 -2.6 -5.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS19010 -2.6 -2.6 acyloxyacyl hydrolase compare
ABZR87_RS12800 -2.5 -3.3 trigger factor compare
ABZR87_RS07635 -2.5 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS01225 -2.5 -2.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS13805 -2.5 -6.0 CBS domain-containing protein compare
ABZR87_RS03430 -2.5 -11.1 type II secretion system minor pseudopilin GspK compare
ABZR87_RS04945 -2.5 -3.6 DUF4390 domain-containing protein compare
ABZR87_RS08980 -2.4 -2.9 cell envelope integrity protein TolA compare
ABZR87_RS03410 -2.4 -7.1 type II secretion system major pseudopilin GspG compare
ABZR87_RS22645 -2.4 -2.7 hypothetical protein compare
ABZR87_RS05590 -2.4 -1.7 orotate phosphoribosyltransferase compare
ABZR87_RS16730 -2.4 -5.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS11435 -2.4 -3.4 Mth938-like domain-containing protein compare
ABZR87_RS04125 -2.4 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS16250 -2.3 -4.9 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS03460 -2.3 -8.9 type II secretion system inner membrane protein GspF compare
ABZR87_RS17650 -2.3 -5.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13175 -2.3 -2.1 tRNA-Leu compare
ABZR87_RS21950 -2.3 -5.4 hypothetical protein compare
ABZR87_RS07620 -2.3 -3.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS09710 -2.3 -3.8 tRNA-Arg compare
ABZR87_RS08640 -2.3 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS01675 -2.3 -2.2 carbohydrate kinase family protein compare
ABZR87_RS00190 -2.2 -8.3 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS10785 -2.2 -3.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS16740 -2.2 -7.4 2-methylcitrate synthase compare
ABZR87_RS12790 -2.2 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00835 -2.2 -1.5 argininosuccinate synthase compare
ABZR87_RS06645 -2.2 -1.5 TlpA disulfide reductase family protein compare
ABZR87_RS00795 -2.2 -4.0 site-specific tyrosine recombinase XerD compare
ABZR87_RS03455 -2.2 -9.6 type II secretion system ATPase GspE compare
ABZR87_RS17235 -2.2 -4.0 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS05645 -2.2 -3.9 SDR family oxidoreductase compare
ABZR87_RS03435 -2.1 -5.3 type II secretion system protein GspL compare
ABZR87_RS10175 -2.1 -4.8 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS00205 -2.1 -2.4 DUF934 domain-containing protein compare
ABZR87_RS15705 -2.1 -4.4 UvrD-helicase domain-containing protein compare
ABZR87_RS03450 -2.1 -10.1 type II secretion system secretin GspD compare
ABZR87_RS01885 -2.1 -4.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS11125 -2.1 -6.4 cell division protein ZapE compare
ABZR87_RS17730 -2.0 -7.3 GntR family transcriptional regulator compare
ABZR87_RS16185 -2.0 -2.6 dCTP deaminase compare
ABZR87_RS11525 -2.0 -1.8 molybdopterin-binding protein compare
ABZR87_RS14190 -2.0 -10.4 DUF2589 domain-containing protein compare
ABZR87_RS13050 -2.0 -1.2 GpE family phage tail protein compare
ABZR87_RS19020 -2.0 -10.7 multidrug efflux RND transporter permease subunit compare
ABZR87_RS16820 -2.0 -6.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11245 -2.0 -4.1 translational GTPase TypA compare
ABZR87_RS02220 -2.0 -7.2 redox-regulated ATPase YchF compare
ABZR87_RS17145 -2.0 -10.1 AMP nucleosidase compare
ABZR87_RS03425 -2.0 -4.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS06350 -1.9 -7.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS11010 -1.9 -1.8 oxidative damage protection protein compare
ABZR87_RS21365 -1.9 -1.3 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS09460 -1.9 -4.0 prephenate dehydrogenase compare
ABZR87_RS01855 -1.9 -7.7 A24 family peptidase compare
ABZR87_RS01425 -1.9 -4.2 ferric iron uptake transcriptional regulator compare
ABZR87_RS16660 -1.9 -4.0 helix-turn-helix domain-containing protein compare
ABZR87_RS00295 -1.9 -3.0 ABC transporter ATP-binding protein compare
ABZR87_RS05350 -1.9 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS12965 -1.8 -2.0 tail protein X compare
ABZR87_RS10190 -1.8 -7.1 translation elongation factor 4 compare
ABZR87_RS14605 -1.8 -9.6 aconitate hydratase AcnA compare
ABZR87_RS07730 -1.8 -3.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS12960 -1.8 -1.5 head completion/stabilization protein compare
ABZR87_RS20555 -1.8 -2.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS20680 -1.8 -2.3 SDR family oxidoreductase compare
ABZR87_RS13770 -1.8 -6.2 CoA transferase subunit A compare
ABZR87_RS16845 -1.8 -1.1 hypothetical protein compare
ABZR87_RS07735 -1.8 -3.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS16540 -1.8 -3.0 MarR family transcriptional regulator compare
ABZR87_RS11440 -1.8 -4.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06840 -1.8 -5.0 COX15/CtaA family protein compare
ABZR87_RS13300 -1.7 -6.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS08660 -1.7 -4.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS14375 -1.7 -3.3 fumarate hydratase compare
ABZR87_RS02680 -1.7 -8.8 c-type cytochrome compare
ABZR87_RS04235 -1.7 -5.3 heavy metal translocating P-type ATPase compare
ABZR87_RS17240 -1.7 -5.1 alkyl hydroperoxide reductase subunit F compare
ABZR87_RS01085 -1.7 -4.5 rhombosortase compare
ABZR87_RS05170 -1.7 -1.1 acetylglutamate kinase compare
ABZR87_RS10080 -1.6 -6.3 GTP 3',8-cyclase MoaA compare
ABZR87_RS09650 -1.6 -7.3 molybdopterin adenylyltransferase compare
ABZR87_RS11460 -1.6 -3.4 gephyrin-like molybdotransferase Glp compare
ABZR87_RS16080 -1.6 -2.5 P-II family nitrogen regulator compare
ABZR87_RS06235 -1.6 -4.8 MBL fold metallo-hydrolase compare
ABZR87_RS09940 -1.6 -7.5 excinuclease ABC subunit UvrB compare
ABZR87_RS01110 -1.6 -7.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS09955 -1.6 -5.9 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS08950 -1.6 -3.3 transcriptional regulator NrdR compare
ABZR87_RS13415 -1.6 -5.1 IclR family transcriptional regulator compare
ABZR87_RS11015 -1.6 -3.1 amino-acid N-acetyltransferase compare
ABZR87_RS15715 -1.6 -4.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS17980 -1.6 -5.3 CheR family methyltransferase compare
ABZR87_RS08015 -1.6 -6.8 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS04880 -1.6 -7.2 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS13315 -1.5 -6.8 RluA family pseudouridine synthase compare
ABZR87_RS01605 -1.5 -5.2 shikimate dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment