Experiment set3IT032 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Sodium acetate 20 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2005 -3.2 -2.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2674 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_4208 -1.9 -2.5 organophosphate pesticide hydrolase compare
Pf1N1B4_2173 -1.8 -2.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_2939 -1.7 -5.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_4017 -1.6 -2.7 DNA-binding heavy metal response regulator compare
Pf1N1B4_3833 -1.6 -7.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_644 -1.6 -2.5 Cold shock protein CspC compare
Pf1N1B4_4040 -1.6 -3.3 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5508 -1.5 -2.6 hypothetical protein compare
Pf1N1B4_619 -1.5 -2.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_769 -1.5 -6.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3812 -1.4 -7.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4035 -1.4 -1.9 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3998 -1.3 -4.4 putative exported protein compare
Pf1N1B4_2885 -1.3 -5.0 Paraquat-inducible protein A compare
Pf1N1B4_652 -1.3 -7.9 Sensory box histidine kinase compare
Pf1N1B4_2209 -1.3 -6.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4352 -1.3 -2.8 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_2912 -1.3 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4028 -1.3 -3.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3582 -1.3 -2.3 C-methyltransferase compare
Pf1N1B4_1307 -1.3 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2884 -1.3 -4.2 Paraquat-inducible protein A compare
Pf1N1B4_1565 -1.2 -3.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5284 -1.2 -2.7 hypothetical protein compare
Pf1N1B4_4030 -1.2 -2.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2105 -1.2 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3325 -1.2 -1.8 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1691 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_3443 -1.2 -1.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3768 -1.2 -2.3 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5311 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_3692 -1.1 -2.1 Chaperone protein HtpG compare
Pf1N1B4_4429 -1.1 -2.1 No significant database matches compare
Pf1N1B4_2526 -1.1 -8.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4611 -1.1 -2.3 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_1619 -1.1 -6.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_4039 -1.1 -4.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1614 -1.1 -1.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_2768 -1.1 -2.8 DNA repair protein RadA compare
Pf1N1B4_3413 -1.1 -1.7 Transcriptional regulator, LysR family compare
Pf1N1B4_1057 -1.1 -2.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1568 -1.1 -2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_3093 -1.1 -1.2 Outer membrane protein H precursor compare
Pf1N1B4_3011 -1.1 -2.2 Tyrosine recombinase XerD compare
Pf1N1B4_5576 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_1627 -1.1 -3.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_324 -1.0 -2.2 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_126 -1.0 -2.2 Pirin compare
Pf1N1B4_412 -1.0 -1.4 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_5370 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_337 -1.0 -3.7 O-antigen export system permease protein RfbD compare
Pf1N1B4_3906 -1.0 -3.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2794 -1.0 -2.0 FIG00953595: hypothetical protein compare
Pf1N1B4_3362 -1.0 -2.3 Multidrug resistance protein B compare
Pf1N1B4_2886 -1.0 -6.5 Paraquat-inducible protein B compare
Pf1N1B4_2372 -1.0 -2.6 Transcriptional regulator, LysR family compare
Pf1N1B4_2940 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_5659 -1.0 -6.8 NfuA Fe-S protein maturation compare
Pf1N1B4_3143 -1.0 -2.3 RecA protein compare
Pf1N1B4_695 -1.0 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_350 -0.9 -4.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_430 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_5112 -0.9 -2.0 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_2739 -0.9 -1.4 acetyltransferase, GNAT family compare
Pf1N1B4_4051 -0.9 -2.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4041 -0.9 -2.7 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3684 -0.9 -3.4 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_164 -0.9 -1.8 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_1472 -0.9 -1.4 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_1781 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_124 -0.9 -1.3 Mechanosensitive ion channel compare
Pf1N1B4_683 -0.9 -2.6 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_5453 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_4765 -0.9 -1.6 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_3972 -0.9 -2.9 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_3997 -0.9 -3.0 Uncharacterized protein YtfM precursor compare
Pf1N1B4_3855 -0.9 -2.0 Chromosome partition protein smc compare
Pf1N1B4_3713 -0.9 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_4849 -0.9 -1.7 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_4957 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_5904 -0.9 -1.5 FIG00955320: hypothetical protein compare
Pf1N1B4_3549 -0.9 -1.8 YciL protein compare
Pf1N1B4_4089 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_1317 -0.9 -2.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_2458 -0.8 -2.1 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_1750 -0.8 -1.5 Death on curing protein, Doc toxin compare
Pf1N1B4_3840 -0.8 -2.7 Response regulator NasT compare
Pf1N1B4_4260 -0.8 -1.9 FIG00965772: hypothetical protein compare
Pf1N1B4_1906 -0.8 -2.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2917 -0.8 -4.5 FIG140336: TPR domain protein compare
Pf1N1B4_419 -0.8 -1.5 Transcriptional regulator, TetR family compare
Pf1N1B4_3081 -0.8 -7.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3687 -0.8 -2.0 FIG00953885: hypothetical protein compare
Pf1N1B4_1462 -0.8 -6.2 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3742 -0.8 -1.7 Oxidoreductase, zinc-binding compare
Pf1N1B4_1626 -0.8 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2874 -0.8 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2114 -0.8 -3.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4699 -0.8 -1.4 Multidrug translocase MdfA compare
Pf1N1B4_6004 -0.8 -3.0 tgtA5 cluster protein 1 compare
Pf1N1B4_3069 -0.8 -1.8 FIG00954614: hypothetical protein compare
Pf1N1B4_2106 -0.8 -1.8 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1624 -0.8 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4818 -0.8 -1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_32 -0.8 -2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_5342 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_1388 -0.8 -1.7 Azurin compare
Pf1N1B4_5283 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2621 -0.8 -1.4 PspA/IM30 family protein compare
Pf1N1B4_4980 -0.8 -1.4 putative lipoprotein compare
Pf1N1B4_3328 -0.8 -1.3 Rhodanese-like domain protein compare
Pf1N1B4_2711 -0.8 -1.6 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_4423 -0.8 -2.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_4388 -0.8 -2.5 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_3168 -0.8 -2.1 AmpG permease compare
Pf1N1B4_339 -0.8 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1511 -0.8 -1.6 FIG027190: Putative transmembrane protein compare
Pf1N1B4_627 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_456 -0.8 -2.8 FIG146278: Maf/YceF/YhdE family protein compare
Pf1N1B4_1234 -0.8 -2.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_890 -0.8 -1.8 DNA recombination and repair protein RecO compare
Pf1N1B4_3911 -0.8 -2.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_5331 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_345 -0.7 -1.2 Integration host factor beta subunit compare
Pf1N1B4_3594 -0.7 -1.2 Flagellin protein FlaA compare
Pf1N1B4_4949 -0.7 -2.2 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_4173 -0.7 -2.1 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
Pf1N1B4_2456 -0.7 -1.9 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_1566 -0.7 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_437 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_414 -0.7 -2.1 transcriptional regulator compare
Pf1N1B4_1389 -0.7 -1.6 Lysine decarboxylase family compare
Pf1N1B4_159 -0.7 -1.3 Putative threonine efflux protein compare
Pf1N1B4_2384 -0.7 -5.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1315 -0.7 -4.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2969 -0.7 -5.4 ATPase, AFG1 family compare
Pf1N1B4_4204 -0.7 -2.4 FldA protein compare
Pf1N1B4_1967 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_4437 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_4007 -0.7 -1.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2527 -0.7 -4.5 ApaG protein compare
Pf1N1B4_3134 -0.7 -0.8 probable tail fiber assembly-like protein compare
Pf1N1B4_5666 -0.7 -1.4 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_63 -0.7 -1.3 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_5489 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_4516 -0.7 -1.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_5015 -0.7 -2.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf1N1B4_2037 -0.7 -1.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_2757 -0.7 -2.0 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_381 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_3312 -0.7 -1.8 Tricarboxylate transport protein TctB compare
Pf1N1B4_2464 -0.7 -1.6 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_1003 -0.7 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5294 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_4756 -0.7 -2.1 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_688 -0.7 -1.1 FIG00955483: hypothetical protein compare
Pf1N1B4_4612 -0.7 -1.4 FIG00954117: hypothetical protein compare
Pf1N1B4_1276 -0.7 -1.7 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_1558 -0.7 -1.7 Transcriptional regulator PhaD compare
Pf1N1B4_1128 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_2568 -0.7 -1.5 Translation elongation factor Tu compare
Pf1N1B4_4976 -0.7 -2.3 D-serine/D-alanine/glycine transporter compare
Pf1N1B4_4408 -0.7 -1.9 two-component response regulator compare
Pf1N1B4_3524 -0.7 -1.8 FIG00955363: hypothetical protein compare
Pf1N1B4_2009 -0.7 -2.2 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_5224 -0.6 -1.7 tRNA-Arg-CCT compare
Pf1N1B4_3317 -0.6 -2.9 Tricarboxylate transport sensor protein TctE compare
Pf1N1B4_5159 -0.6 -2.4 Cellulose synthase operon protein C compare
Pf1N1B4_3625 -0.6 -1.9 Flagellar synthesis regulator FleN compare
Pf1N1B4_5425 -0.6 -1.2 DNA-binding protein HU-beta compare
Pf1N1B4_3647 -0.6 -4.4 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_5402 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_3612 -0.6 -1.5 Flagellar hook-length control protein FliK compare
Pf1N1B4_764 -0.6 -2.6 Uncharacterized isomerase yddE, PhzC-PhzF family compare
Pf1N1B4_5747 -0.6 -1.4 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_275 -0.6 -1.2 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_606 -0.6 -1.4 Iron siderophore sensor protein compare
Pf1N1B4_1159 -0.6 -1.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_650 -0.6 -1.9 FIG001943: hypothetical protein YajQ compare
Pf1N1B4_5463 -0.6 -1.3 hypothetical protein compare
Pf1N1B4_2401 -0.6 -1.4 Lipoprotein, putative compare
Pf1N1B4_5509 -0.6 -1.1 hypothetical protein compare
Pf1N1B4_1569 -0.6 -4.8 Twin-arginine translocation protein TatC compare
Pf1N1B4_4806 -0.6 -1.8 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_693 -0.6 -1.9 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_883 -0.6 -1.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_4897 -0.6 -0.8 Transcriptional regulator, LysR family compare
Pf1N1B4_4972 -0.6 -1.5 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5386 -0.6 -1.3 hypothetical protein compare
Pf1N1B4_3872 -0.6 -3.4 Putative analog of CcoH, COG3198 compare
Pf1N1B4_2417 -0.6 -1.4 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_336 -0.6 -4.8 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_16 -0.6 -1.8 Cys regulon transcriptional activator CysB compare
Pf1N1B4_2339 -0.6 -1.2 COG1872 compare
Pf1N1B4_3508 -0.6 -2.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2400 -0.6 -1.5 FIG00955006: hypothetical protein compare
Pf1N1B4_122 -0.6 -1.8 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_3730 -0.6 -1.4 Sodium-dependent transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress Sodium acetate across organisms