Experiment set3IT032 for Pseudomonas syringae pv. syringae B728a

Compare to:

epiphytic; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.9 -3.5 anthranilate synthase, component II compare
Psyr_1663 -4.6 -5.5 phosphoribosylanthranilate isomerase compare
Psyr_0831 -4.5 -3.1 Two-component response regulator CbrB compare
Psyr_4754 -4.2 -2.9 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0034 -4.1 -4.8 tryptophan synthase, beta chain compare
Psyr_4609 -3.8 -16.7 anthranilate synthase, component I compare
Psyr_0378 -3.7 -9.7 Glycosyl transferase, family 2 compare
Psyr_0033 -3.7 -5.0 tryptophan synthase, alpha chain compare
Psyr_2462 -3.6 -5.7 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4270 -3.5 -9.8 serine hydroxymethyltransferase compare
Psyr_0827 -3.2 -5.2 pantothenate synthetase compare
Psyr_3008 -3.2 -7.0 Undecaprenyl-diphosphatase compare
Psyr_1378 -3.2 -3.9 RecA protein compare
Psyr_0377 -3.2 -9.7 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0557 -3.1 -7.2 phosphoserine phosphatase compare
Psyr_1668 -3.1 -9.6 amidophosphoribosyltransferase compare
Psyr_1269 -3.1 -4.7 phosphoribosylformylglycinamidine synthase compare
Psyr_0529 -3.1 -6.1 Glycosyl transferase, group 1 compare
Psyr_4580 -3.0 -3.6 anthranilate phosphoribosyltransferase compare
Psyr_1373 -3.0 -2.1 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4852 -3.0 -8.4 D-3-phosphoglycerate dehydrogenase compare
Psyr_0826 -2.9 -7.2 glucose-6-phosphate isomerase compare
Psyr_3281 -2.9 -3.1 Glycoside hydrolase, family 3, N-terminal compare
Psyr_0531 -2.7 -2.7 LmbE-like protein compare
Psyr_4512 -2.7 -6.6 putative phage-related protein compare
Psyr_2807 -2.6 -2.0 NinB compare
Psyr_1613 -2.5 -5.1 septum site-determining protein MinC compare
Psyr_0917 -2.5 -7.7 ABC-2 compare
Psyr_3174 -2.5 -5.3 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_2461 -2.5 -2.8 Uncharacterized conserved protein UCP030820 compare
Psyr_0704 -2.4 -6.6 glutamate 5-kinase compare
Psyr_4687 -2.3 -8.1 biotin synthase compare
Psyr_4407 -2.3 -3.7 phosphoribosylamine--glycine ligase compare
Psyr_0846 -2.3 -9.3 acetolactate synthase, large subunit compare
Psyr_3555 -2.3 -2.0 aspartate kinase compare
Psyr_4369 -2.3 -6.3 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0167 -2.3 -4.2 hypothetical protein compare
Psyr_0454 -2.3 -5.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_2973 -2.2 -2.4 Glyoxalase I compare
Psyr_5065 -2.1 -8.3 ATP-dependent DNA helicase UvrD compare
Psyr_3287 -2.1 -3.1 DNA topoisomerase I compare
Psyr_1193 -2.0 -2.9 type III helper protein HrpZ1 compare
Psyr_0532 -2.0 -5.3 conserved hypothetical protein compare
Psyr_1614 -1.9 -2.9 lipid A biosynthesis acyltransferase compare
Psyr_1410 -1.9 -4.1 Holliday junction DNA helicase RuvB compare
Psyr_3805 -1.9 -2.5 hypothetical protein compare
Psyr_4686 -1.9 -5.5 8-amino-7-oxononanoate synthase compare
Psyr_0918 -1.9 -9.4 ABC transporter compare
Psyr_4143 -1.9 -2.2 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_4362 -1.8 -3.6 Rare lipoprotein A compare
Psyr_0847 -1.8 -5.1 acetolactate synthase, small subunit compare
Psyr_0983 -1.8 -6.3 Protein of unknown function DUF159 compare
Psyr_1247 -1.8 -2.4 conserved hypothetical protein compare
Psyr_1111 -1.7 -2.1 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0411 -1.7 -11.0 glutamate synthase (NADPH) large subunit compare
Psyr_3014 -1.7 -2.6 protoporphyrin IX magnesium-chelatase compare
Psyr_0848 -1.7 -7.5 ketol-acid reductoisomerase compare
Psyr_0469 -1.7 -6.0 dihydroxyacid dehydratase compare
Psyr_3202 -1.7 -2.3 NADH dehydrogenase subunit G compare
Psyr_1121 -1.6 -2.0 6-phosphogluconolactonase compare
Psyr_3179 -1.6 -3.0 DNA translocase FtsK compare
Psyr_0923 -1.6 -4.3 hypothetical protein compare
Psyr_0811 -1.6 -4.8 Integral membrane protein TerC compare
Psyr_3581 -1.6 -5.4 ribosomal large subunit pseudouridine synthase B compare
Psyr_1688 -1.6 -2.7 Protein of unknown function DUF1315 compare
Psyr_2980 -1.5 -3.1 UDP-glucose pyrophosphorylase compare
Psyr_1251 -1.5 -3.9 quinoprotein compare
Psyr_0386 -1.5 -4.5 phosphoribosyl-AMP cyclohydrolase compare
Psyr_2406 -1.5 -1.5 Flavin reductase-like protein compare
Psyr_3886 -1.5 -1.7 methionyl-tRNA synthetase compare
Psyr_3604 -1.5 -2.8 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_0630 -1.5 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_3198 -1.4 -1.7 NADH dehydrogenase subunit B compare
Psyr_4684 -1.4 -2.7 biotin synthesis protein BioC compare
Psyr_0976 -1.4 -3.6 Malate:quinone-oxidoreductase compare
Psyr_4126 -1.4 -7.6 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_4203 -1.4 -2.0 SsrA-binding protein compare
Psyr_4408 -1.4 -6.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4116 -1.4 -2.1 Transport-associated protein compare
Psyr_2471 -1.4 -1.8 hydroxymethylglutaryl-CoA lyase compare
Psyr_3854 -1.4 -1.1 OmpA/MotB compare
Psyr_0393 -1.4 -2.8 Protein of unknown function DUF971 compare
Psyr_4155 -1.4 -2.3 Protein of unknown function DUF615 compare
Psyr_2927 -1.4 -2.4 transcriptional regulator, TetR family compare
Psyr_2039 -1.4 -2.1 Fimbrial protein compare
Psyr_3289 -1.3 -2.0 3-ketoacyl-CoA thiolase compare
Psyr_0350 -1.3 -1.5 ABC transporter compare
Psyr_0830 -1.3 -3.9 Poly(A) polymerase compare
Psyr_3791 -1.3 -2.4 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_4896 -1.3 -2.9 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_1633 -1.3 -1.8 MotA/TolQ/ExbB proton channel compare
Psyr_0447 -1.3 -2.2 malonate decarboxylase subunit, putative compare
Psyr_1984 -1.3 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psyr_0832 -1.3 -5.2 Two-component sensor kinase CbrA compare
Psyr_1401 -1.3 -4.4 Histidine triad (HIT) protein compare
Psyr_4567 -1.3 -2.7 Protein of unknown function UPF0075 compare
Psyr_4132 -1.2 -6.4 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0571 -1.2 -2.9 tRNA isopentenyltransferase compare
Psyr_4158 -1.2 -6.6 conserved hypothetical protein compare
Psyr_3636 -1.2 -6.7 Polysaccharide biosynthesis protein CapD compare
Psyr_3432 -1.2 -2.2 MotA/TolQ/ExbB proton channel compare
Psyr_1748 -1.2 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0402 -1.2 -8.3 Peptidoglycan glycosyltransferase compare
Psyr_5133 -1.2 -3.4 tRNA modification GTPase trmE compare
Psyr_4133 -1.2 -6.5 histidinol dehydrogenase compare
Psyr_0919 -1.2 -7.3 Chromosome segregation ATPase-like protein compare
Psyr_3906 -1.2 -1.2 regulatory protein, DeoR compare
Psyr_0294 -1.2 -3.5 Exopolyphosphatase compare
Psyr_4018 -1.2 -5.2 Formyltetrahydrofolate deformylase compare
Psyr_4380 -1.2 -2.2 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_1408 -1.2 -1.8 Holliday junction endonuclease RuvC compare
Psyr_3241 -1.2 -3.9 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_1270 -1.2 -1.3 conserved hypothetical protein compare
Psyr_0320 -1.2 -3.7 Protein of unknown function UPF0149 compare
Psyr_1985 -1.2 -4.4 3-isopropylmalate dehydrogenase compare
Psyr_0528 -1.1 -1.9 Carbamoyltransferase compare
Psyr_3120 -1.1 -1.7 D-glucarate dehydratase compare
Psyr_3433 -1.1 -3.3 Protein-glutamate methylesterase compare
Psyr_3601 -1.1 -2.0 conserved hypothetical protein compare
Psyr_2143 -1.1 -1.8 delta1-piperideine 2-carboxylate reductase compare
Psyr_1907 -1.1 -2.0 GTP cyclohydrolase I compare
Psyr_4894 -1.1 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0473 -1.1 -4.4 Methionine biosynthesis MetW compare
Psyr_3184 -1.1 -2.4 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_0914 -1.1 -6.3 Glycosyl transferase, group 1 compare
Psyr_0674 -1.1 -2.4 Protein of unknown function UPF0029 compare
Psyr_0487 -1.1 -2.3 glutathione synthase compare
Psyr_0534 -1.1 -7.1 membrane protein, putative compare
Psyr_0920 -1.1 -7.7 Glycosyl transferase, group 1 compare
Psyr_4416 -1.1 -1.6 precorrin-8X methylmutase compare
Psyr_0579 -1.1 -5.9 RNAse R compare
Psyr_5132 -1.1 -2.2 Glucose-inhibited division protein A subfamily compare
Psyr_3701 -1.1 -1.8 thioredoxin, putative compare
Psyr_0947 -1.1 -3.9 TPR repeat protein:TPR repeat protein compare
Psyr_0635 -1.1 -2.2 MaoC-like dehydratase compare
Psyr_3850 -1.1 -3.3 lipoprotein, putative compare
Psyr_4470 -1.1 -2.5 ABC transporter compare
Psyr_2921 -1.1 -2.2 ADP-ribosylglycohydrolase compare
Psyr_4822 -1.0 -2.0 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_3672 -1.0 -2.6 cobalamin-5'-phosphate synthase compare
Psyr_4355 -1.0 -2.7 hypothetical protein compare
Psyr_4078 -1.0 -6.2 AmpG-related permease compare
Psyr_3637 -1.0 -6.2 Glycosyl transferase, family 4 compare
Psyr_4842 -1.0 -3.4 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_3620 -1.0 -1.1 hypothetical protein compare
Psyr_0137 -1.0 -0.9 outer membrane transport energization protein ExbD compare
Psyr_3090 -1.0 -2.5 hypothetical protein compare
Psyr_0936 -1.0 -5.0 Glycosyl transferase, group 1 compare
Psyr_3958 -1.0 -4.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_4134 -1.0 -4.5 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_0025 -1.0 -2.2 shikimate dehydrogenase compare
Psyr_0356 -1.0 -1.5 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_0201 -1.0 -3.4 ATP-dependent DNA helicase RecG compare
Psyr_0724 -1.0 -1.3 conserved hypothetical protein compare
Psyr_0916 -1.0 -4.5 GDP-mannose 4,6-dehydratase compare
Psyr_3674 -1.0 -1.6 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_4788 -0.9 -1.0 lipoprotein, putative compare
Psyr_3055 -0.9 -1.4 Aminoglycoside phosphotransferase compare
Psyr_4128 -0.9 -3.4 sulfate adenylyltransferase subunit 2 compare
Psyr_2969 -0.9 -4.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3296 -0.9 -1.6 MOSC:MOSC, N-terminal beta barrel compare
Psyr_3691 -0.9 -4.6 conserved hypothetical protein compare
Psyr_1966 -0.9 -2.5 Peptidase M19, renal dipeptidase compare
Psyr_2829 -0.9 -1.9 conserved hypothetical protein compare
Psyr_3290 -0.9 -1.9 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_4294 -0.9 -1.5 Histone deacetylase family protein compare
Psyr_0365 -0.9 -3.2 protein of unknown function DUF886 compare
Psyr_0259 -0.9 -1.7 Osmolarity sensor protein envZ compare
Psyr_3545 -0.9 -1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_4601 -0.9 -1.5 hypothetical protein compare
Psyr_3258 -0.9 -2.5 conserved hypothetical protein compare
Psyr_3812 -0.9 -1.8 CDS compare
Psyr_3395 -0.9 -2.5 FlhB domain protein compare
Psyr_3193 -0.9 -1.6 Transcription factor jumonji, jmjC compare
Psyr_2088 -0.9 -1.5 2-methylaconitate cis-trans isomerase compare
Psyr_1988 -0.9 -1.4 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_2360 -0.9 -1.7 CBS compare
Psyr_4681 -0.9 -5.1 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_1019 -0.9 -3.0 Dihydroneopterin aldolase compare
Psyr_0412 -0.9 -4.8 glutamate synthase (NADPH) small subunit compare
Psyr_3584 -0.9 -4.5 condensin subunit ScpA compare
Psyr_0915 -0.9 -4.5 NAD-dependent epimerase/dehydratase compare
Psyr_5130 -0.9 -3.7 chromosome segregation ATPase compare
Psyr_3367 -0.9 -2.5 Iron permease FTR1 compare
Psyr_2733 -0.9 -1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_0498 -0.9 -2.0 Protein of unknown function DUF1445 compare
Psyr_0426 -0.9 -1.0 lipoprotein, putative compare
Psyr_4161 -0.8 -1.8 Rod shape-determining protein MreD compare
Psyr_4343 -0.8 -2.8 Sel1-like repeat protein compare
Psyr_0014 -0.8 -1.9 lipid A biosynthesis acyltransferase compare
Psyr_0148 -0.8 -1.9 hypothetical protein compare
Psyr_3690 -0.8 -2.5 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_5062 -0.8 -3.6 transcriptional regulator, LysR family compare
Psyr_0373 -0.8 -1.6 CDS compare
Psyr_4043 -0.8 -2.0 hypothetical protein compare
Psyr_0941 -0.8 -4.1 Conserved hypothetical protein 92 compare
Psyr_4480 -0.8 -1.1 outer membrane transport energization protein TonB compare
Psyr_0835 -0.8 -3.2 transcriptional regulator, TraR/DksA family compare
Psyr_0565 -0.8 -3.9 Protein of unknown function UPF0126 compare
Psyr_2264 -0.8 -1.3 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments