Experiment set3IT032 for Sinorhizobium meliloti 1021

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
SMc03797 -7.7 -7.5 homoserine O-succinyltransferase compare
SM_b21174 -7.6 -3.9 phosphate uptake ABC transporter permease compare
SMc00235 -7.3 -7.1 anthranilate phosphoribosyltransferase compare
SMc02572 -7.0 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
SMc00236 -6.9 -4.9 Indole-3-glycerol phosphate synthase compare
SMc00640 -6.9 -8.2 phosphoserine aminotransferase compare
SMc00963 -6.7 -3.5 hypothetical protein compare
SM_b20904 -6.6 -3.1 sugar uptake ABC transporter ATP-binding protein compare
SMc01494 -6.5 -10.9 phosphoserine phosphatase compare
SMc04405 -6.5 -10.0 3-isopropylmalate dehydrogenase compare
SMc03068 -6.4 -10.7 phosphogluconate dehydratase compare
SMc04005 -6.4 -6.2 pyruvate kinase compare
SMc01042 -6.3 -6.5 nitrogen regulation protein compare
SM_b21115 -6.3 -2.6 response regulator protein compare
SMc04026 -6.3 -9.6 glutamate synthase compare
SMc01004 -6.3 -9.4 phosphoribosyl-AMP cyclohydrolase compare
SMa1635 -6.3 -1.5 hypothetical protein compare
SMc00615 -6.3 -11.5 phosphoribosylaminoimidazole synthetase compare
SMc02899 -6.2 -12.7 prephenate dehydratase compare
SMc00494 -6.2 -1.5 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc04045 -6.1 -7.3 dihydroxy-acid dehydratase compare
SMc02717 -6.0 -15.6 2-isopropylmalate synthase compare
SM_b21175 -6.0 -4.2 phosphate uptake ABC transporter permease compare
SMc02570 -5.9 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00918 -5.9 -11.3 ATP phosphoribosyltransferase regulatory subunit compare
SMc03895 -5.8 -16.8 pyruvate carboxylase compare
SMc01726 -5.8 -5.7 acetylglutamate kinase compare
SMc01361 -5.8 -5.1 dihydroorotase compare
SM_b21176 -5.7 -5.2 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc03112 -5.7 -18.3 B12-dependent methionine synthase compare
SMc01054 -5.6 -3.8 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01431 -5.6 -15.8 acetolactate synthase 3 catalytic subunit compare
SMc03229 -5.6 -2.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03777 -5.6 -7.8 gamma-glutamyl phosphate reductase compare
SMc00554 -5.6 -6.7 amidophosphoribosyltransferase compare
SMc00815 -5.5 -2.3 inosine 5'-monophosphate dehydrogenase compare
SMc02245 -5.5 -5.1 dihydroorotate dehydrogenase 2 compare
SMc01041 -5.5 -2.9 NIFR3-like protein compare
SMc02307 -5.5 -6.6 histidinol dehydrogenase compare
SM_b20903 -5.5 -10.2 sugar uptake ABC transporter permease compare
SMc00294 -5.5 -13.2 aminotransferase compare
SMc04028 -5.5 -22.1 glutamate synthase compare
SMc02165 -5.4 -7.4 orotate phosphoribosyltransferase compare
SMc00091 -5.4 -12.0 sulfate adenylyltransferase compare
SMc03979 -5.4 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
SMc03823 -5.4 -9.9 isopropylmalate isomerase large subunit compare
SMc02725 -5.4 -12.2 anthranilate synthase compare
SMc01360 -5.3 -3.1 aspartate carbamoyltransferase catalytic subunit compare
SMc00488 -5.3 -16.2 phosphoribosylformylglycinamidine synthase II compare
SMc02766 -5.3 -14.2 tryptophan synthase subunit beta compare
SMc01801 -5.3 -2.8 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00092 -5.3 -11.8 phosphoadenosine phosphosulfate reductase compare
SMc01843 -5.2 -11.2 5,10-methylenetetrahydrofolate reductase compare
SMc00711 -5.2 -4.7 cyclohexadienyl dehydrogenase compare
SMc02765 -5.2 -11.7 tryptophan synthase subunit alpha compare
SMc00293 -5.2 -11.0 homoserine dehydrogenase compare
SMc03070 -5.2 -8.7 glucose-6-phosphate 1-dehydrogenase compare
SMc00493 -5.2 -6.0 phosphoribosylformylglycinamidine synthase I compare
SM_b20984 -5.2 -18.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
SMc01881 -5.1 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02425 -5.1 -4.4 transcriptional regulator compare
SM_b21177 -5.0 -7.9 phosphate uptake ABC transporter ATP-binding protein compare
SMc01124 -5.0 -12.7 PII uridylyl-transferase compare
SMc02767 -4.9 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc00993 -4.9 -9.4 phosphoribosylamine--glycine ligase compare
SMc04002 -4.8 -4.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc01139 -4.7 -6.7 RNA polymerase factor sigma-54 compare
SMc00495 -4.7 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00917 -4.7 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02217 -4.7 -7.2 O-succinylhomoserine sulfhydrylase compare
SMc00053 -4.7 -1.1 monovalent cation/H+ antiporter subunit C compare
SMc02138 -4.6 -7.4 acetylornithine transaminase compare
SMc01430 -4.6 -5.2 acetolactate synthase 3 regulatory subunit compare
SMc01043 -4.6 -7.1 nitrogen assimilation regulatory protein compare
SMc02569 -4.6 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
SMc03100 -4.6 -1.9 hypothetical protein compare
SMc04088 -4.5 -8.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02755 -4.5 -5.9 S-adenosyl-L-homocysteine hydrolase compare
SMc01569 -4.4 -1.5 carbamoyl phosphate synthase small subunit compare
SMc03978 -4.4 -3.1 transketolase compare
SMc03776 -4.3 -3.3 gamma-glutamyl kinase compare
SMc02123 -4.3 -3.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc00412 -4.3 -5.1 orotidine 5'-phosphate decarboxylase compare
SMc00334 -4.2 -2.4 cytidylate kinase compare
SMc00090 -4.2 -8.3 sulfate adenylyltransferase compare
SMc00131 -4.2 -10.7 transcriptional regulator compare
SMc01053 -4.2 -5.3 siroheme synthase compare
SMc01880 -4.2 -2.9 pantoate--beta-alanine ligase compare
SMc00614 -4.2 -5.5 phosphoribosylglycinamide formyltransferase compare
SMc01842 -4.2 -3.0 methyltransferase transcription regulator protein compare
SMc02124 -4.2 -13.2 nitrite reductase compare
SMc01215 -4.1 -2.9 carbamoyl phosphate synthase large subunit compare
SMc03069 -4.1 -2.5 6-phosphogluconolactonase compare
SMc02137 -4.1 -2.7 ornithine carbamoyltransferase compare
SMc03242 -4.1 -2.7 GTP-binding protein compare
SMc04001 -4.0 -1.0 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc04346 -4.0 -5.6 ketol-acid reductoisomerase compare
SMc00876 -4.0 -7.6 ATP-binding MRP protein compare
SMc02707 -3.9 -3.4 hypothetical protein compare
SMc02140 -3.8 -2.1 phosphate regulon transcriptional regulatory protein compare
SMc02246 -3.8 -0.9 hypothetical protein compare
SMc01028 -3.8 -11.1 phosphopyruvate hydratase compare
SMc02232 -3.7 -4.1 hypothetical protein compare
SMc01770 -3.7 -1.1 serine hydroxymethyltransferase compare
SM_b20983 -3.7 -6.8 hypothetical protein compare
SMc03826 -3.7 -2.9 argininosuccinate synthase compare
SMc02166 -3.6 -7.8 dihydroorotase compare
SM_b20902 -3.5 -10.7 sugar uptake ABC transporter substrate-binding protein precursor compare
SMc00017 -3.5 -1.2 homoserine kinase compare
SMc03924 -3.5 -11.6 glycogen synthase compare
SMc03981 -3.4 -2.9 phosphoglycerate kinase compare
SMc03850 -3.4 -1.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02058 -3.4 -3.1 YAJC protein compare
SMc00641 -3.3 -4.7 D-3-phosphoglycerate dehydrogenase compare
SMc03763 -3.3 -4.4 cytosine-specific methyltransferase compare
SMc02909 -3.3 -2.6 transglycosylase transmembrane protein compare
SMc00450 -3.2 -3.0 protoheme IX farnesyltransferase compare
SMc02363 -3.1 -4.1 cytochrome C-type biogenesis transmembrane protein compare
SMc03967 -3.0 -1.6 Holliday junction resolvase compare
SMa0789 -3.0 -4.4 GntR family transcriptional regulator compare
SMc02574 -2.9 -4.3 imidazoleglycerol-phosphate dehydratase compare
SMc01440 -2.9 -5.1 hydrolase serine protease transmembrane protein compare
SMc02228 -2.9 -5.7 acetyl-CoA acetyltransferase compare
SMc02434 -2.9 -3.3 hypothetical protein compare
SMc02713 -2.8 -2.1 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc01578 -2.8 -6.0 aspartate aminotransferase compare
SMc02835 -2.7 -6.0 glucokinase compare
SM_b20987 -2.7 -3.6 siroheme synthase compare
SMc03795 -2.7 -1.3 isopropylmalate isomerase small subunit compare
SMc02838 -2.6 -2.9 phosphoglyceromutase compare
SMa0753 -2.6 -1.1 hypothetical protein compare
SMc00302 -2.6 -1.7 hypothetical protein compare
SMc00405 -2.6 -5.8 hypothetical protein compare
SMc02983 -2.5 -5.0 ornithine, DAP, or arginine decarboxylase compare
SMc00709 -2.4 -2.3 hypothetical protein compare
SMc00982 -2.3 -5.7 dioxygenase compare
SMc01850 -2.3 -2.6 hypothetical protein compare
SMc02753 -2.3 -1.5 PTS system transporter subunit IIA compare
SMc01441 -2.3 -4.5 membrane bound protease compare
SM_b21441 -2.2 -1.8 inosine-5'-monophosphate dehydrogenase compare
SMa0211 -2.2 -1.2 hypothetical protein compare
SMc00619 -2.2 -1.6 hypothetical protein compare
SMc02227 -2.1 -4.4 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc00914 -2.1 -3.1 oxidoreductase compare
SMc02683 -2.1 -1.9 hypothetical protein compare
SMc00296 -2.1 -6.6 POLY3-hydroxybutyrate polymerase compare
SMc02640 -2.1 -4.5 UDP-glucuronic acid epimerase compare
SMc02373 -2.1 -1.3 hypothetical protein compare
SMc01147 -2.0 -4.4 coproporphyrinogen III oxidase compare
SMc00987 -2.0 -2.0 hypothetical protein compare
SMc01208 -2.0 -2.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc01845 -1.9 -1.8 transglycosylase transmembrane protein compare
SM_b20948 -1.9 -1.7 glucosyltransferase compare
SMc02102 -1.9 -3.7 hypothetical protein compare
SM_b20728 -1.9 -1.7 hypothetical protein compare
SMc02171 -1.9 -2.3 periplasmic binding ABC transporter protein compare
SMc02229 -1.8 -7.1 acyl-CoA dehydrogenase compare
SMc02069 -1.8 -3.9 hypothetical protein compare
SMc00414 -1.8 -6.9 hypothetical protein compare
SM_b20320 -1.8 -1.4 TRAP-type large permease component compare
SMc02858 -1.8 -0.9 chaperone protein DnaJ compare
SMc03153 -1.7 -3.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SM_b20392 -1.7 -4.1 transcriptional regulator NanR compare
SMc04296 -1.7 -0.9 cell division protein FtsZ compare
SMc02484 -1.7 -3.6 amino acid efflux transmembrane protein compare
SMc00684 -1.7 -2.4 hypothetical protein compare
SMa0126 -1.7 -1.5 CspA8 Cold shock family protein compare
SM_b20323 -1.7 -1.0 transcriptional regulator compare
SMc02812 -1.7 -1.9 hypothetical protein compare
SMc04245 -1.7 -6.5 high-affinity zinc uptake system ABC transporter protein compare
SMc01164 -1.7 -6.0 hypothetical protein compare
SMc02147 -1.6 -6.0 phosphate regulon sensor histidine kinase transmembrane protein compare
SM_b20773 -1.6 -3.4 GntR family transcriptional regulator compare
SM_b20711 -1.6 -1.7 hypothetical protein compare
SMc02904 -1.6 -1.6 hypothetical protein compare
SMc00088 -1.6 -1.4 hypothetical protein compare
SMc04243 -1.6 -4.5 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc02476 -1.5 -2.7 hypothetical protein compare
SM_b20312 -1.5 -6.4 dihydroxyacetone kinase compare
SMc02435 -1.5 -2.0 methyltransferase compare
SMc02451 -1.5 -1.4 hypothetical protein compare
SMa1118 -1.5 -1.6 HspC2 heat shock protein compare
SMc03140 -1.5 -3.2 transcriptional regulator compare
SMc04244 -1.5 -5.1 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc04330 -1.5 -1.3 trimethylamine methyltransferase compare
SMa0905 -1.5 -1.0 hypothetical protein compare
SMc02115 -1.5 -1.1 hypothetical protein compare
SMc04090 -1.5 -2.7 sun protein compare
SMc04236 -1.5 -2.6 glycine-rich cell wall structural transmembrane protein compare
SMa2020 -1.4 -3.2 Transcriptional regulator compare
SMc00976 -1.4 -1.9 enoyl-CoA hydratase compare
SMc01368 -1.4 -3.0 transport transmembrane protein compare
SMc01929 -1.4 -2.1 hypothetical protein compare
SM_b20986 -1.4 -8.3 Nitrate reductase (EC 1.7.99.4) (from data) conserved
SMc02834 -1.4 -2.8 methylglyoxal synthase compare
SMa0575 -1.4 -1.9 hypothetical protein compare
SMc00579 -1.4 -4.8 dimethyladenosine transferase compare
SMc04348 -1.4 -1.2 transcriptional regulator compare
SM_b20258 -1.4 -1.9 transcriptional regulator compare
SMc02141 -1.4 -2.0 phosphate transporter PhoU compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Sodium nitrate in Sinorhizobium meliloti 1021

For nitrogen source Sodium nitrate across organisms