Experiment set3IT032 for Herbaspirillum seropedicae SmR1

Compare to:

Ammonium chloride nitrogen source; low aeration

200 most important genes:

  gene name fitness t score description  
HSERO_RS16475 -4.6 -2.5 tryptophan synthase subunit alpha compare
HSERO_RS18430 -4.2 -6.2 chorismate mutase compare
HSERO_RS18990 -4.0 -7.6 pyrroline-5-carboxylate reductase compare
HSERO_RS17815 -4.0 -2.7 glycosyl transferase compare
HSERO_RS15575 -3.6 -2.0 uroporphyrin-III C-methyltransferase compare
HSERO_RS19595 -3.6 -17.4 glutamate synthase compare
HSERO_RS20350 -3.6 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS16515 -3.5 -12.7 isopropylmalate isomerase compare
HSERO_RS02340 -3.4 -13.7 dihydroorotase compare
HSERO_RS16470 -3.2 -5.7 tryptophan synthase subunit alpha compare
HSERO_RS17185 -3.2 -12.6 2-isopropylmalate synthase compare
HSERO_RS20325 -3.2 -5.6 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS08660 -3.1 -7.9 ketol-acid reductoisomerase compare
HSERO_RS15550 -3.1 -5.5 sulfite reductase compare
HSERO_RS01935 -3.1 -5.0 3-dehydroquinate dehydratase compare
HSERO_RS19445 -3.0 -10.8 anthranilate phosphoribosyltransferase compare
HSERO_RS15555 -3.0 -8.8 oxidoreductase compare
HSERO_RS16505 -3.0 -5.6 3-isopropylmalate dehydratase small subunit compare
HSERO_RS08650 -3.0 -10.3 acetolactate synthase compare
HSERO_RS02650 -3.0 -10.0 dihydroxy-acid dehydratase compare
HSERO_RS20330 -3.0 -6.0 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS10460 -2.9 -1.5 homoserine dehydrogenase compare
HSERO_RS19510 -2.9 -9.5 threonine dehydratase compare
HSERO_RS20345 -2.7 -4.4 histidinol dehydrogenase compare
HSERO_RS01815 -2.7 -5.2 gamma-glutamyl kinase compare
HSERO_RS20320 -2.7 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS16500 -2.7 -8.9 3-isopropylmalate dehydrogenase compare
HSERO_RS00455 -2.7 -8.6 homoserine O-acetyltransferase compare
HSERO_RS16480 -2.7 -5.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS19450 -2.7 -2.8 indole-3-glycerol-phosphate synthase compare
HSERO_RS02330 -2.6 -6.1 aspartate carbamoyltransferase compare
HSERO_RS04325 -2.6 -7.0 helicase I compare
HSERO_RS09050 -2.6 -5.4 2-aminoadipate aminotransferase compare
HSERO_RS15570 -2.6 -5.8 sulfate adenylyltransferase compare
HSERO_RS04340 -2.5 -6.3 gamma-glutamyl ligase compare
HSERO_RS20920 -2.5 -8.7 3-dehydroquinate synthase compare
HSERO_RS07160 -2.5 -6.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS20310 -2.4 -2.6 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS00795 -2.3 -4.8 glycerol-3-phosphate dehydrogenase compare
HSERO_RS20315 -2.3 -3.8 imidazole glycerol phosphate synthase compare
HSERO_RS04335 -2.2 -2.5 sodium:proton antiporter compare
HSERO_RS19590 -2.2 -1.1 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS16440 -2.1 -4.9 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS00800 -2.0 -6.6 hypothetical protein compare
HSERO_RS18425 -2.0 -2.3 prephenate dehydrogenase compare
HSERO_RS00965 -2.0 -1.0 trehalose-phosphatase compare
HSERO_RS15565 -2.0 -5.9 sulfate adenylyltransferase subunit 2 compare
HSERO_RS15680 -1.9 -10.0 chemotaxis protein CheY compare
HSERO_RS04330 -1.9 -7.6 ATP-dependent exonuclease compare
HSERO_RS15560 -1.9 -5.1 phosphoadenosine phosphosulfate reductase compare
HSERO_RS19435 -1.9 -6.7 anthranilate synthase subunit I compare
HSERO_RS07400 -1.9 -3.0 LysR family transcriptional regulator compare
HSERO_RS17810 -1.6 -0.6 glycosyl transferase compare
HSERO_RS02205 -1.6 -2.1 phosphatase compare
HSERO_RS15685 -1.6 -7.1 histidine kinase compare
HSERO_RS02325 -1.6 -3.3 uracil phosphoribosyltransferase compare
HSERO_RS17980 -1.6 -1.7 GTP-binding protein compare
HSERO_RS10865 -1.5 -6.8 PII uridylyl-transferase compare
HSERO_RS01990 -1.5 -5.5 shikimate 5-dehydrogenase compare
HSERO_RS15585 -1.5 -5.9 cobalamin biosynthesis protein CbiX compare
HSERO_RS11065 -1.5 -1.7 quinolinate synthetase compare
HSERO_RS06655 -1.4 -2.2 hypothetical protein compare
HSERO_RS05910 -1.4 -2.2 phosphoribosylglycinamide formyltransferase compare
HSERO_RS11070 -1.4 -5.4 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS20355 -1.4 -4.4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS10455 -1.4 -6.1 aminotransferase compare
HSERO_RS19995 -1.3 -1.2 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS21375 -1.3 -1.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS07390 -1.3 -6.4 tartrate dehydrogenase compare
HSERO_RS08115 -1.3 -1.5 acyl-CoA-binding protein compare
HSERO_RS18365 -1.2 -2.8 hypothetical protein compare
HSERO_RS13230 -1.2 -1.8 cobyric acid synthase compare
HSERO_RS07935 -1.2 -8.2 serine acetyltransferase compare
HSERO_RS03595 -1.2 -2.1 cation transporter compare
HSERO_RS08655 -1.2 -1.6 acetolactate synthase compare
HSERO_RS13310 -1.1 -6.3 cobaltochelatase compare
HSERO_RS13275 -1.0 -2.0 cobalamin biosynthesis protein CbiG compare
HSERO_RS13260 -1.0 -2.1 cobinamide adenolsyltransferase compare
HSERO_RS13270 -1.0 -5.2 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS01245 -1.0 -1.0 hypothetical protein compare
HSERO_RS10395 -1.0 -1.7 phosphate transport regulator compare
HSERO_RS16885 -1.0 -0.5 magnesium-transporting ATPase compare
HSERO_RS16450 -1.0 -3.9 colicin V production protein compare
HSERO_RS04230 -1.0 -2.8 LuxR family transcriptional regulator compare
HSERO_RS22980 -1.0 -4.0 membrane protein compare
HSERO_RS13315 -1.0 -1.0 ferredoxin compare
HSERO_RS13295 -1.0 -3.7 membrane protein compare
HSERO_RS13660 -1.0 -1.8 membrane protein compare
HSERO_RS09775 -0.9 -1.9 cobalamin synthase compare
HSERO_RS09145 -0.9 -3.0 DNA topoisomerase IV subunit A compare
HSERO_RS13240 -0.9 -3.7 cobalamin biosynthesis protein CobD compare
HSERO_RS16370 -0.9 -1.2 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS11085 -0.9 -3.6 L-aspartate oxidase compare
HSERO_RS06420 -0.9 -1.4 hypothetical protein compare
HSERO_RS21935 -0.9 -1.1 cytochrome C compare
HSERO_RS01835 -0.9 -1.2 hypothetical protein compare
HSERO_RS20985 -0.9 -1.1 serine acetyltransferase compare
HSERO_RS04445 -0.9 -1.7 hypothetical protein compare
HSERO_RS13305 -0.9 -3.0 magnesium chelatase compare
HSERO_RS02760 -0.8 -1.5 hypothetical protein compare
HSERO_RS17220 -0.8 -2.2 membrane protein compare
HSERO_RS10020 -0.8 -1.4 flippase compare
HSERO_RS04265 -0.8 -1.3 tyrosine recombinase XerD compare
HSERO_RS22990 -0.8 -2.8 transcriptional regulator compare
HSERO_RS09770 -0.8 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS22535 -0.8 -2.9 LuxR family transcriptional regulator compare
HSERO_RS23600 -0.8 -2.6 urea ABC transporter ATP-binding protein compare
HSERO_RS21740 -0.8 -3.6 methionine synthase compare
HSERO_RS05810 -0.8 -2.0 sulfurtransferase compare
HSERO_RS15655 -0.8 -1.9 methylcitrate synthase compare
HSERO_RS15070 -0.8 -0.9 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS06530 -0.8 -0.8 muconolactone delta-isomerase compare
HSERO_RS23515 -0.8 -2.3 lipoprotein compare
HSERO_RS21475 -0.8 -0.9 recombinase XerC compare
HSERO_RS03235 -0.8 -1.0 hypothetical protein compare
HSERO_RS11885 -0.7 -1.5 hypothetical protein compare
HSERO_RS13320 -0.7 -2.1 membrane protein compare
HSERO_RS05500 -0.7 -1.2 transaldolase compare
HSERO_RS01260 -0.7 -1.3 3-hydroxyacyl-CoA dehydrogenase compare
HSERO_RS18875 -0.7 -1.1 ATPase compare
HSERO_RS12960 -0.7 -2.0 hypothetical protein compare
HSERO_RS03085 -0.7 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS13450 -0.7 -2.4 malonate decarboxylase subunit gamma compare
HSERO_RS10135 -0.7 -1.6 chemotaxis protein CheZ compare
HSERO_RS00975 -0.7 -3.3 alpha,alpha-trehalose-phosphate synthase compare
HSERO_RS00335 -0.7 -2.4 hypothetical protein compare
HSERO_RS15630 -0.7 -0.6 exodeoxyribonuclease III compare
HSERO_RS08475 -0.7 -1.6 chemotaxis protein CheY compare
HSERO_RS14150 -0.7 -1.5 RNA polymerase sigma factor compare
HSERO_RS07730 -0.7 -2.3 ferredoxin-NADP reductase compare
HSERO_RS18455 -0.7 -1.2 phosphoglycolate phosphatase compare
HSERO_RS13280 -0.7 -1.4 precorrin-4 C11-methyltransferase compare
HSERO_RS03450 -0.7 -1.1 energy transducer protein TonB compare
HSERO_RS15040 -0.7 -3.5 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS08075 -0.7 -1.0 ferredoxin compare
HSERO_RS13265 -0.7 -2.1 G3E family GTPase compare
HSERO_RS21540 -0.7 -1.7 alkyl hydroperoxide reductase subunit C compare
HSERO_RS03440 -0.7 -1.8 biopolymer transporter ExbD compare
HSERO_RS16745 -0.7 -2.8 gluconate 2-dehydrogenase compare
HSERO_RS20125 -0.7 -1.7 hypothetical protein compare
HSERO_RS18685 -0.7 -0.9 hypothetical protein compare
HSERO_RS06915 -0.6 -1.6 hypothetical protein compare
HSERO_RS23205 -0.6 -1.1 3-beta hydroxysteroid dehydrogenase compare
HSERO_RS09155 -0.6 -2.7 DNA topoisomerase IV subunit B compare
HSERO_RS06170 -0.6 -1.1 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS01985 -0.6 -1.5 energy transducer TonB compare
HSERO_RS13655 -0.6 -2.1 hypothetical protein compare
HSERO_RS02160 -0.6 -1.1 DNA-dependent helicase compare
HSERO_RS15180 -0.6 -3.4 transcription-repair coupling factor compare
HSERO_RS07025 -0.6 -2.2 ATP-dependent Clp protease ClpS compare
HSERO_RS09235 -0.6 -1.0 MarR family transcriptional regulator compare
HSERO_RS03500 -0.6 -1.8 uracil phosphoribosyltransferase compare
HSERO_RS18115 -0.6 -1.3 hypothetical protein compare
HSERO_RS03285 -0.6 -1.1 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS05980 -0.6 -0.8 aldehyde dehydrogenase compare
HSERO_RS06650 -0.6 -2.3 MarR family transcriptional regulator compare
HSERO_RS04810 -0.6 -2.6 aldehyde dehydrogenase compare
HSERO_RS10490 -0.6 -2.5 gluconate transporter compare
HSERO_RS02135 -0.6 -2.2 phosphomethylpyrimidine kinase compare
HSERO_RS06960 -0.6 -1.3 chemotaxis protein CheY compare
HSERO_RS08305 -0.6 -1.7 hypothetical protein compare
HSERO_RS21345 -0.6 -2.3 cell division inhibitor MinD compare
HSERO_RS09745 -0.6 -1.4 chemotaxis protein CheY compare
HSERO_RS06330 -0.6 -1.6 transcriptional regulator compare
HSERO_RS04175 -0.6 -3.0 hypothetical protein compare
HSERO_RS17110 -0.6 -0.9 ribonuclease H compare
HSERO_RS08000 -0.6 -2.3 metal-transporting P-type ATPase transmembrane protein compare
HSERO_RS10070 -0.6 -1.4 hypothetical protein compare
HSERO_RS02155 -0.6 -1.2 chorismate mutase compare
HSERO_RS04435 -0.6 -1.2 oxidoreductase compare
HSERO_RS11315 -0.6 -1.7 histidine kinase compare
HSERO_RS05265 -0.6 -1.5 L-fucono-1,5-lactonase (from data) compare
HSERO_RS22510 -0.6 -2.6 membrane protein compare
HSERO_RS02100 -0.6 -1.1 4-oxalocrotonate decarboxylase compare
HSERO_RS06595 -0.6 -3.3 hypothetical protein compare
HSERO_RS08515 -0.5 -2.0 diguanylate cyclase compare
HSERO_RS09245 -0.5 -1.2 carboxylesterase compare
HSERO_RS10805 -0.5 -0.7 succinyldiaminopimelate aminotransferase compare
HSERO_RS13770 -0.5 -1.0 polysaccharide deacetylase compare
HSERO_RS09640 -0.5 -2.1 peptidase compare
HSERO_RS09780 -0.5 -1.2 phosphoglycerate mutase compare
HSERO_RS09660 -0.5 -0.9 ribonuclease III compare
HSERO_RS09760 -0.5 -1.9 hypothetical protein compare
HSERO_RS11990 -0.5 -1.7 periplasmic or secreted lipoprotein compare
HSERO_RS10815 -0.5 -1.9 chromosome segregation protein SMC compare
HSERO_RS00460 -0.5 -2.0 methionine biosynthesis protein MetW compare
HSERO_RS20655 -0.5 -3.6 phenylacetate-CoA ligase compare
HSERO_RS18970 -0.5 -2.2 hypothetical protein compare
HSERO_RS12770 -0.5 -0.8 3-oxoacyl-ACP reductase compare
HSERO_RS18995 -0.5 -1.2 hypothetical protein compare
HSERO_RS04270 -0.5 -2.2 membrane protein compare
HSERO_RS04500 -0.5 -1.9 oxidoreductase compare
HSERO_RS04235 -0.5 -2.7 C4-dicarboxylate ABC transporter compare
HSERO_RS22420 -0.5 -1.2 azoreductase compare
HSERO_RS13105 -0.5 -2.9 C4-dicarboxylate ABC transporter compare
HSERO_RS13645 -0.5 -2.2 membrane protein compare
HSERO_RS03540 -0.5 -0.6 dimethyladenosine transferase compare
HSERO_RS08405 -0.5 -0.3 membrane protein compare
HSERO_RS08640 -0.5 -0.5 hypothetical protein compare
HSERO_RS01740 -0.5 -2.3 CTP pyrophosphohydrolase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms