Experiment set3IT032 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Tetracycline hydrochloride 0.024 mg/ml

200 most important genes:

  gene name fitness t score description  
ABZR86_RS11870 -7.1 -13.8 phospholipid-binding protein MlaC compare
ABZR86_RS20775 -7.1 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR86_RS11885 -6.7 -5.5 ATP-binding cassette domain-containing protein compare
ABZR86_RS09380 -6.5 -6.4 response regulator transcription factor compare
ABZR86_RS09415 -6.4 -8.8 ABC transporter ATP-binding protein compare
ABZR86_RS00225 -6.4 -9.8 multidrug effflux MFS transporter conserved
ABZR86_RS11880 -6.3 -5.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS09400 -6.3 -6.1 MtnX-like HAD-IB family phosphatase compare
ABZR86_RS09930 -6.2 -2.0 transporter associated domain-containing protein compare
ABZR86_RS09385 -6.0 -5.9 sensor histidine kinase compare
ABZR86_RS12595 -5.9 -1.9 cell division ATP-binding protein FtsE compare
ABZR86_RS09405 -5.9 -9.0 TolC family protein compare
ABZR86_RS21480 -5.9 -8.0 arginase family protein compare
ABZR86_RS06590 -5.9 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS19355 -5.8 -3.7 DNA-binding transcriptional regulator OxyR compare
ABZR86_RS19715 -5.8 -12.3 Dps family protein compare
ABZR86_RS09395 -5.7 -14.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS12835 -5.6 -8.6 DedA family protein compare
ABZR86_RS09935 -5.6 -3.1 DUF4105 domain-containing protein compare
ABZR86_RS14785 -5.6 -1.8 hypothetical protein compare
ABZR86_RS08865 -5.6 -1.8 30S ribosomal protein S18 compare
ABZR86_RS21435 -5.5 -6.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS07570 -5.5 -18.4 efflux RND transporter permease subunit compare
ABZR86_RS07215 -5.4 -3.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS07565 -5.3 -13.9 efflux RND transporter periplasmic adaptor subunit compare
ABZR86_RS17210 -5.2 -13.5 TolC family outer membrane protein compare
ABZR86_RS11875 -5.1 -11.4 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS13465 -5.1 -2.2 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
ABZR86_RS09075 -5.1 -1.6 NrsF family protein compare
ABZR86_RS02180 -5.0 -4.9 high frequency lysogenization protein HflD compare
ABZR86_RS19990 -5.0 -6.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
ABZR86_RS11825 -5.0 -3.4 citrate synthase compare
ABZR86_RS08415 -4.9 -3.3 OmpA family protein compare
ABZR86_RS18360 -4.9 -12.6 response regulator transcription factor compare
ABZR86_RS10355 -4.8 -1.6 chemotaxis protein CheW compare
ABZR86_RS08250 -4.6 -3.2 phosphate signaling complex protein PhoU compare
ABZR86_RS05550 -4.6 -3.2 lipopolysaccharide assembly protein LapB compare
ABZR86_RS00650 -4.5 -20.1 TonB-dependent receptor compare
ABZR86_RS09410 -4.5 -6.5 FtsX-like permease family protein compare
ABZR86_RS21335 -4.5 -1.4 response regulator transcription factor compare
ABZR86_RS05690 -4.5 -1.4 RnfH family protein compare
ABZR86_RS10830 -4.4 -3.2 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS06360 -4.3 -9.2 cell wall hydrolase compare
ABZR86_RS17180 -4.2 -8.9 glycosyltransferase compare
ABZR86_RS10840 -4.2 -3.4 Holliday junction branch migration protein RuvA compare
ABZR86_RS07175 -4.2 -3.7 sigma-E factor negative regulatory protein compare
ABZR86_RS09885 -4.1 -2.5 trypsin-like peptidase domain-containing protein compare
ABZR86_RS15640 -4.0 -2.8 orotate phosphoribosyltransferase compare
ABZR86_RS21420 -4.0 -12.8 alpha/beta fold hydrolase compare
ABZR86_RS06275 -4.0 -2.0 DUF6165 family protein compare
ABZR86_RS14755 -4.0 -4.1 DUF2239 family protein compare
ABZR86_RS12410 -4.0 -2.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS16045 -3.8 -5.3 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS21340 -3.8 -8.0 sensor histidine kinase compare
ABZR86_RS06270 -3.7 -5.2 glycosyltransferase family 9 protein compare
ABZR86_RS08355 -3.6 -4.5 FtsH protease activity modulator HflK compare
ABZR86_RS10975 -3.6 -3.4 GNAT family N-acetyltransferase compare
ABZR86_RS11900 -3.6 -5.0 ribonuclease PH compare
ABZR86_RS19865 -3.6 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS19460 -3.6 -1.6 RDD family protein compare
ABZR86_RS15020 -3.5 -2.7 DUF484 family protein compare
ABZR86_RS07560 -3.5 -10.9 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS12790 -3.4 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS15265 -3.4 -7.7 DJ-1/PfpI family protein compare
ABZR86_RS08775 -3.3 -3.0 HAD-IA family hydrolase compare
ABZR86_RS18815 -3.3 -4.7 FAD-binding protein compare
ABZR86_RS22135 -3.2 -4.5 hypothetical protein compare
ABZR86_RS05700 -3.1 -4.8 SsrA-binding protein SmpB compare
ABZR86_RS11485 -2.9 -7.6 hypothetical protein compare
ABZR86_RS09845 -2.9 -9.7 DUF1631 domain-containing protein compare
ABZR86_RS17510 -2.9 -13.0 carboxy terminal-processing peptidase compare
ABZR86_RS13880 -2.8 -1.9 peptide deformylase compare
ABZR86_RS11655 -2.8 -4.9 SLC13 family permease compare
ABZR86_RS18960 -2.7 -5.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12885 -2.7 -3.8 magnesium-translocating P-type ATPase compare
ABZR86_RS18365 -2.6 -11.9 ATP-binding protein compare
ABZR86_RS09840 -2.6 -1.2 Trm112 family protein compare
ABZR86_RS16525 -2.5 -6.0 alpha/beta fold hydrolase compare
ABZR86_RS09505 -2.5 -7.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS08270 -2.4 -7.3 ribonuclease R compare
ABZR86_RS21725 -2.4 -9.4 YhdP family protein compare
ABZR86_RS18715 -2.4 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS00685 -2.4 -1.7 carbon storage regulator CsrA compare
ABZR86_RS18830 -2.4 -5.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS17155 -2.3 -4.2 mitochondrial fission ELM1 family protein compare
ABZR86_RS14875 -2.3 -10.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR86_RS16760 -2.3 -1.6 phage tail terminator-like protein compare
ABZR86_RS13895 -2.3 -9.5 glycosyltransferase family 39 protein compare
ABZR86_RS07580 -2.2 -3.2 metalloregulator ArsR/SmtB family transcription factor compare
ABZR86_RS07665 -2.2 -3.0 exodeoxyribonuclease V subunit beta compare
ABZR86_RS12415 -2.2 -3.7 NADP-dependent malic enzyme compare
ABZR86_RS14690 -2.1 -4.3 phosphogluconate dehydratase compare
ABZR86_RS11975 -2.1 -1.2 UPF0149 family protein compare
ABZR86_RS08480 -2.1 -3.4 methylisocitrate lyase compare
ABZR86_RS21485 -2.0 -6.8 GNAT family N-acetyltransferase compare
ABZR86_RS18705 -2.0 -1.7 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS00640 -2.0 -4.1 sigma-70 family RNA polymerase sigma factor compare
ABZR86_RS13430 -1.9 -2.9 DUF4156 domain-containing protein compare
ABZR86_RS18450 -1.9 -3.0 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS09125 -1.9 -4.8 paraquat-inducible protein A compare
ABZR86_RS07610 -1.9 -4.1 cytochrome o ubiquinol oxidase subunit IV compare
ABZR86_RS07180 -1.9 -3.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS10785 -1.8 -6.2 7-cyano-7-deazaguanine synthase QueC compare
ABZR86_RS14580 -1.8 -2.0 DUF3224 domain-containing protein compare
ABZR86_RS15665 -1.8 -5.4 anhydro-N-acetylmuramic acid kinase compare
ABZR86_RS22115 -1.8 -1.7 hypothetical protein compare
ABZR86_RS10085 -1.7 -14.0 TonB-dependent receptor compare
ABZR86_RS14100 -1.7 -4.0 DNA adenine methylase compare
ABZR86_RS08350 -1.7 -3.0 protease modulator HflC compare
ABZR86_RS07660 -1.7 -2.9 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS15990 -1.7 -1.8 hypothetical protein compare
ABZR86_RS05570 -1.7 -2.2 (d)CMP kinase compare
ABZR86_RS18690 -1.6 -4.0 DUF4398 domain-containing protein compare
ABZR86_RS21315 -1.6 -5.5 GldG family protein compare
ABZR86_RS02195 -1.6 -2.4 ATP-dependent Clp protease adapter ClpS compare
ABZR86_RS16195 -1.6 -6.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR86_RS03445 -1.6 -4.6 TetR/AcrR family transcriptional regulator compare
ABZR86_RS17480 -1.6 -6.1 lytic murein transglycosylase B compare
ABZR86_RS07200 -1.6 -4.9 DUF2058 family protein compare
ABZR86_RS18585 -1.6 -4.9 polysaccharide biosynthesis/export family protein compare
ABZR86_RS11860 -1.5 -9.4 VacJ family lipoprotein compare
ABZR86_RS21515 -1.5 -5.9 phosphodiester glycosidase family protein compare
ABZR86_RS09895 -1.5 -5.4 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABZR86_RS19555 -1.5 -3.9 fumarate hydratase compare
ABZR86_RS09130 -1.5 -3.6 paraquat-inducible protein A compare
ABZR86_RS21320 -1.5 -5.0 ABC transporter permease subunit compare
ABZR86_RS11270 -1.5 -7.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR86_RS04920 -1.5 -1.2 pentapeptide repeat-containing protein compare
ABZR86_RS11620 -1.5 -4.9 30S ribosomal protein S6--L-glutamate ligase compare
ABZR86_RS15705 -1.5 -6.2 rhomboid family intramembrane serine protease compare
ABZR86_RS19225 -1.5 -2.4 site-specific tyrosine recombinase XerD compare
ABZR86_RS13935 -1.5 -4.3 lipid A biosynthesis acyltransferase compare
ABZR86_RS14165 -1.5 -2.1 hypothetical protein compare
ABZR86_RS15655 -1.4 -8.4 MFS transporter compare
ABZR86_RS11085 -1.4 -5.1 ATP-binding protein compare
ABZR86_RS08435 -1.4 -2.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS11840 -1.4 -5.6 ATP-dependent DNA helicase RecG compare
ABZR86_RS09500 -1.4 -5.7 phosphotransferase compare
ABZR86_RS20595 -1.4 -1.3 DUF6587 family protein compare
ABZR86_RS10710 -1.4 -1.4 transcriptional regulator NrdR compare
ABZR86_RS15335 -1.4 -4.9 lysophospholipid acyltransferase family protein compare
ABZR86_RS17425 -1.3 -1.4 16S ribosomal RNA compare
ABZR86_RS07165 -1.3 -4.9 translation elongation factor 4 compare
ABZR86_RS19185 -1.3 -6.3 efflux RND transporter periplasmic adaptor subunit compare
ABZR86_RS20700 -1.3 -0.9 transcriptional repressor AgaR compare
ABZR86_RS19980 -1.3 -2.5 AsmA family protein compare
ABZR86_RS15890 -1.3 -2.9 TetR/AcrR family transcriptional regulator compare
ABZR86_RS09805 -1.3 -7.5 lysophospholipid acyltransferase family protein compare
ABZR86_RS12490 -1.3 -4.3 AMP nucleosidase compare
ABZR86_RS12590 -1.3 -7.1 permease-like cell division protein FtsX compare
ABZR86_RS19800 -1.3 -5.5 RNase adapter RapZ compare
ABZR86_RS05440 -1.3 -2.6 tetratricopeptide repeat protein compare
ABZR86_RS06780 -1.2 -2.1 CvpA family protein compare
ABZR86_RS14835 -1.2 -8.2 YdiY family protein compare
ABZR86_RS13355 -1.2 -5.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS04645 -1.2 -3.0 sigma-70 family RNA polymerase sigma factor compare
ABZR86_RS20245 -1.2 -3.0 flagellar biosynthesis protein FlhB compare
ABZR86_RS19190 -1.2 -7.0 efflux RND transporter permease subunit compare
ABZR86_RS07615 -1.2 -1.8 cytochrome o ubiquinol oxidase subunit III compare
ABZR86_RS12005 -1.2 -1.0 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS17380 -1.2 -1.1 LON peptidase substrate-binding domain-containing protein compare
ABZR86_RS14700 -1.2 -3.8 glucose-6-phosphate dehydrogenase compare
ABZR86_RS17985 -1.2 -1.8 hypothetical protein compare
ABZR86_RS00890 -1.2 -1.0 enoyl-CoA hydratase/isomerase family protein compare
ABZR86_RS15340 -1.2 -5.1 alpha/beta fold hydrolase compare
ABZR86_RS19930 -1.2 -1.4 YbaL family putative K(+) efflux transporter compare
ABZR86_RS12780 -1.2 -3.7 pteridine reductase compare
ABZR86_RS07725 -1.2 -1.4 barstar family protein compare
ABZR86_RS09120 -1.2 -4.4 MlaD family protein compare
ABZR86_RS10340 -1.2 -1.6 chemotaxis protein CheB compare
ABZR86_RS15670 -1.2 -6.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS18410 -1.2 -2.9 Arginase (EC 3.5.3.1) (from data) compare
ABZR86_RS18100 -1.1 -3.4 hypothetical protein compare
ABZR86_RS13515 -1.1 -2.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS15025 -1.1 -2.9 tyrosine recombinase XerC compare
ABZR86_RS03300 -1.1 -1.7 hypothetical protein compare
ABZR86_RS16140 -1.1 -7.9 outer membrane beta-barrel protein compare
ABZR86_RS13920 -1.1 -5.9 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS12505 -1.1 -3.4 SDR family oxidoreductase compare
ABZR86_RS19710 -1.1 -7.5 glycosyltransferase family 2 protein compare
ABZR86_RS13650 -1.1 -2.5 6-carboxytetrahydropterin synthase QueD compare
ABZR86_RS20600 -1.1 -3.4 ferrous iron transporter B compare
ABZR86_RS06630 -1.1 -2.4 phosphopyruvate hydratase compare
ABZR86_RS19900 -1.1 -2.3 hemolysin family protein compare
ABZR86_RS07265 -1.1 -2.9 protein phosphatase 2C domain-containing protein compare
ABZR86_RS08885 -1.1 -4.4 MalM family protein compare
ABZR86_RS06595 -1.1 -3.4 5'/3'-nucleotidase SurE compare
ABZR86_RS20340 -1.1 -0.8 nuclear transport factor 2 family protein compare
ABZR86_RS03105 -1.1 -1.0 response regulator transcription factor compare
ABZR86_RS17755 -1.1 -1.6 hypothetical protein compare
ABZR86_RS02895 -1.1 -3.8 ABC transporter ATP-binding protein compare
ABZR86_RS18720 -1.1 -2.0 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS09540 -1.1 -4.2 tRNA guanosine(34) transglycosylase Tgt compare
ABZR86_RS15330 -1.1 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR86_RS00805 -1.1 -2.8 polynucleotide adenylyltransferase PcnB compare
ABZR86_RS19075 -1.1 -2.1 YceI family protein compare
ABZR86_RS21325 -1.1 -2.3 ABC transporter ATP-binding protein compare
ABZR86_RS19585 -1.1 -1.2 GNAT family N-acetyltransferase compare
ABZR86_RS09300 -1.0 -5.7 C40 family peptidase compare
ABZR86_RS08180 -1.0 -1.4 RnfABCDGE type electron transport complex subunit B compare


Specific Phenotypes

For 15 genes in this experiment

For stress Tetracycline hydrochloride in Dyella japonica UNC79MFTsu3.2

For stress Tetracycline hydrochloride across organisms