Experiment set3IT032 for Dyella japonica UNC79MFTsu3.2

LB with Tetracycline hydrochloride 0.024 mg/ml

Group: stress
Media: LB + Tetracycline hydrochloride (0.024 mg/ml)
Culturing: Dyella79_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 5.0 generations
By: Adam on 17-May-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1769 B2

Specific Phenotypes

For 15 genes in this experiment

For stress Tetracycline hydrochloride in Dyella japonica UNC79MFTsu3.2

For stress Tetracycline hydrochloride across organisms

SEED Subsystems

Subsystem	#Specific
Multidrug Resistance Efflux Pumps	2
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)	2
Copper homeostasis	1
Ribosomal protein S12p Asp methylthiotransferase	1
Ribosome biogenesis bacterial	1
YjeE	1
tRNA processing	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Lipopolysaccharide biosynthesis
• Pentose phosphate pathway
• Puromycin biosynthesis
• Pyrimidine metabolism
• Nicotinate and nicotinamide metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
pseudouridine degradation	2	1	1
peptidoglycan recycling II	10	7	1
peptidoglycan recycling I	14	11	1