Experiment set3IT032 for Ralstonia sp. UNC404CL21Col

Compare to:

no_plant_soil sample 2; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.6 -5.2 NUDIX domain-containing protein compare
ABZR87_RS08630 -6.6 -4.6 dihydroorotase compare
ABZR87_RS02145 -5.9 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS01255 -5.9 -13.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS08695 -5.7 -21.8 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02640 -5.4 -15.0 diaminopimelate decarboxylase compare
ABZR87_RS02590 -5.4 -10.9 3-dehydroquinate synthase compare
ABZR87_RS05305 -5.1 -14.1 TetR family transcriptional regulator compare
ABZR87_RS05100 -5.0 -5.9 RNA polymerase-binding protein DksA compare
ABZR87_RS02160 -4.8 -6.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02155 -4.8 -9.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS09465 -4.8 -7.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS04975 -4.8 -3.3 peptide deformylase compare
ABZR87_RS13790 -4.7 -10.5 chorismate synthase compare
ABZR87_RS02595 -4.7 -13.3 shikimate kinase compare
ABZR87_RS16845 -4.6 -2.0 hypothetical protein compare
ABZR87_RS02550 -4.5 -5.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS14500 -4.4 -16.3 tryptophan synthase subunit beta compare
ABZR87_RS07380 -4.4 -17.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS13705 -4.4 -3.0 integration host factor subunit alpha compare
ABZR87_RS14505 -4.4 -5.3 phosphoribosylanthranilate isomerase compare
ABZR87_RS00435 -4.4 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14965 -4.3 -4.2 DUF3619 family protein compare
ABZR87_RS14535 -4.3 -6.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14540 -4.3 -8.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02445 -4.2 -5.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS02440 -4.2 -9.5 twin-arginine translocase subunit TatC compare
ABZR87_RS08990 -4.2 -8.0 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS10195 -4.2 -4.0 signal peptidase I compare
ABZR87_RS07050 -4.1 -2.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16170 -4.1 -2.9 argininosuccinate lyase compare
ABZR87_RS14115 -4.1 -2.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS02570 -4.1 -25.2 glutamate synthase-related protein compare
ABZR87_RS08795 -4.1 -4.8 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS02380 -4.1 -14.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS14490 -4.0 -10.7 tryptophan synthase subunit alpha compare
ABZR87_RS02375 -4.0 -11.8 cytochrome c1 compare
ABZR87_RS02545 -3.9 -7.9 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS07035 -3.9 -5.9 RNase adapter RapZ compare
ABZR87_RS02140 -3.9 -18.7 anthranilate synthase component I compare
ABZR87_RS02850 -3.8 -2.6 elongation factor Tu compare
ABZR87_RS12785 -3.8 -4.5 endopeptidase La compare
ABZR87_RS08970 -3.7 -10.8 protein TolQ compare
ABZR87_RS14530 -3.7 -8.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS06495 -3.6 -3.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS16960 -3.6 -4.9 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02535 -3.5 -5.9 phospholipid-binding protein MlaC compare
ABZR87_RS02565 -3.5 -6.8 glutamate synthase subunit beta compare
ABZR87_RS13475 -3.5 -9.0 PAS domain S-box protein compare
ABZR87_RS05200 -3.5 -13.9 homoserine O-acetyltransferase compare
ABZR87_RS21285 -3.5 -2.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02075 -3.4 -3.6 23S ribosomal RNA compare
ABZR87_RS01240 -3.4 -12.0 catalase/peroxidase HPI compare
ABZR87_RS04865 -3.4 -5.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS04995 -3.4 -3.3 DNA topoisomerase III compare
ABZR87_RS06705 -3.4 -15.4 glutamate--cysteine ligase compare
ABZR87_RS07510 -3.4 -5.6 LysR family transcriptional regulator compare
ABZR87_RS08985 -3.4 -13.6 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS02385 -3.3 -5.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS09450 -3.3 -6.5 prephenate dehydratase compare
ABZR87_RS20875 -3.3 -7.2 LysR family transcriptional regulator compare
ABZR87_RS22920 -3.2 -5.5 phosphogluconate dehydratase compare
ABZR87_RS09515 -3.2 -3.1 cysteine synthase CysM compare
ABZR87_RS02655 -3.2 -7.9 anti-sigma factor compare
ABZR87_RS10980 -3.2 -1.9 tRNA-Leu compare
ABZR87_RS08980 -3.2 -4.4 cell envelope integrity protein TolA compare
ABZR87_RS09445 -3.2 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS04940 -3.1 -7.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02555 -3.1 -7.4 ABC transporter ATP-binding protein compare
ABZR87_RS02540 -3.0 -8.0 VacJ family lipoprotein compare
ABZR87_RS15805 -3.0 -7.2 IclR family transcriptional regulator compare
ABZR87_RS01245 -3.0 -2.9 Dps family protein compare
ABZR87_RS09615 -2.9 -2.0 50S ribosomal protein L19 compare
ABZR87_RS22970 -2.9 -10.4 cystathionine gamma-synthase family protein compare
ABZR87_RS08700 -2.9 -10.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09935 -2.9 -2.8 amino acid aminotransferase compare
ABZR87_RS20880 -2.9 -8.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS08625 -2.9 -2.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS06350 -2.9 -9.8 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS00795 -2.9 -3.9 site-specific tyrosine recombinase XerD compare
ABZR87_RS12790 -2.8 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10170 -2.7 -4.0 RseA family anti-sigma factor compare
ABZR87_RS01615 -2.7 -1.4 RNB domain-containing ribonuclease compare
ABZR87_RS07005 -2.7 -3.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS05065 -2.7 -4.4 tyrosine recombinase XerC compare
ABZR87_RS00360 -2.7 -3.1 acyl-CoA desaturase compare
ABZR87_RS11790 -2.7 -3.1 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS16735 -2.6 -13.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS19010 -2.6 -4.3 acyloxyacyl hydrolase compare
ABZR87_RS07635 -2.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS06745 -2.5 -6.3 S41 family peptidase compare
ABZR87_RS13175 -2.5 -2.2 tRNA-Leu compare
ABZR87_RS08660 -2.5 -4.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS06845 -2.5 -9.5 heme o synthase compare
ABZR87_RS04125 -2.5 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS14375 -2.5 -4.1 fumarate hydratase compare
ABZR87_RS00970 -2.4 -1.7 molecular chaperone DnaJ compare
ABZR87_RS13250 -2.4 -3.1 phosphoserine phosphatase SerB compare
ABZR87_RS05590 -2.4 -1.7 orotate phosphoribosyltransferase compare
ABZR87_RS13415 -2.4 -5.3 IclR family transcriptional regulator compare
ABZR87_RS01885 -2.4 -4.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS11125 -2.4 -7.1 cell division protein ZapE compare
ABZR87_RS07360 -2.3 -10.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS12780 -2.3 -1.7 HU family DNA-binding protein compare
ABZR87_RS11010 -2.3 -2.9 oxidative damage protection protein compare
ABZR87_RS03930 -2.3 -3.1 glycine cleavage system protein GcvH compare
ABZR87_RS07730 -2.3 -3.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS04945 -2.2 -3.2 DUF4390 domain-containing protein compare
ABZR87_RS00835 -2.2 -1.5 argininosuccinate synthase compare
ABZR87_RS06645 -2.2 -1.5 TlpA disulfide reductase family protein compare
ABZR87_RS10175 -2.2 -6.6 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS00340 -2.2 -2.7 50S ribosomal protein L33 compare
ABZR87_RS11245 -2.2 -5.5 translational GTPase TypA compare
ABZR87_RS07625 -2.2 -2.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS10785 -2.2 -3.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS14950 -2.2 -2.1 acetolactate synthase small subunit compare
ABZR87_RS00875 -2.2 -4.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS15715 -2.1 -8.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS21950 -2.1 -11.7 hypothetical protein compare
ABZR87_RS09895 -2.1 -1.2 DUF1841 family protein compare
ABZR87_RS14190 -2.0 -10.6 DUF2589 domain-containing protein compare
ABZR87_RS13285 -2.0 -9.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS05350 -2.0 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS07470 -2.0 -7.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS12795 -2.0 -5.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS01855 -2.0 -8.9 A24 family peptidase compare
ABZR87_RS13300 -1.9 -7.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS04235 -1.9 -7.9 heavy metal translocating P-type ATPase compare
ABZR87_RS10780 -1.9 -2.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS11940 -1.9 -2.8 SsrA-binding protein SmpB compare
ABZR87_RS10610 -1.9 -1.3 inositol monophosphatase family protein compare
ABZR87_RS03425 -1.9 -8.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS01645 -1.9 -3.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS02035 -1.8 -4.2 substrate-binding domain-containing protein compare
ABZR87_RS00200 -1.8 -3.9 phosphoadenylyl-sulfate reductase compare
ABZR87_RS03430 -1.8 -9.1 type II secretion system minor pseudopilin GspK compare
ABZR87_RS01270 -1.8 -7.4 ATP-dependent DNA helicase RecG compare
ABZR87_RS05570 -1.8 -7.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS10190 -1.8 -7.5 translation elongation factor 4 compare
ABZR87_RS16055 -1.8 -5.5 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS19485 -1.8 -2.3 H-NS histone family protein compare
ABZR87_RS11815 -1.8 -6.9 [protein-PII] uridylyltransferase compare
ABZR87_RS03450 -1.8 -10.9 type II secretion system secretin GspD compare
ABZR87_RS08650 -1.8 -8.4 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS09710 -1.8 -2.9 tRNA-Arg compare
ABZR87_RS17310 -1.7 -6.2 PadR family transcriptional regulator compare
ABZR87_RS01280 -1.7 -3.3 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS03460 -1.7 -9.2 type II secretion system inner membrane protein GspF compare
ABZR87_RS17650 -1.7 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07965 -1.7 -5.0 recombinase RecA compare
ABZR87_RS14080 -1.7 -3.0 phosphate signaling complex protein PhoU compare
ABZR87_RS15705 -1.7 -3.5 UvrD-helicase domain-containing protein compare
ABZR87_RS07735 -1.7 -3.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS03440 -1.7 -7.2 type II secretion system protein GspM compare
ABZR87_RS05170 -1.6 -1.1 acetylglutamate kinase compare
ABZR87_RS09955 -1.6 -5.5 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS01810 -1.6 -2.4 glutamate 5-kinase compare
ABZR87_RS06710 -1.6 -11.3 glutathione synthase compare
ABZR87_RS01225 -1.6 -3.2 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS10565 -1.6 -1.5 cupin domain-containing protein compare
ABZR87_RS07700 -1.6 -1.1 peptidylprolyl isomerase compare
ABZR87_RS17235 -1.6 -4.6 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS02220 -1.6 -7.5 redox-regulated ATPase YchF compare
ABZR87_RS16125 -1.6 -6.3 heme biosynthesis protein HemY compare
ABZR87_RS06840 -1.6 -5.9 COX15/CtaA family protein compare
ABZR87_RS08640 -1.6 -5.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS09940 -1.5 -8.9 excinuclease ABC subunit UvrB compare
ABZR87_RS12800 -1.5 -2.1 trigger factor compare
ABZR87_RS05205 -1.5 -4.5 methionine biosynthesis protein MetW compare
ABZR87_RS00185 -1.5 -4.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS01675 -1.5 -2.0 carbohydrate kinase family protein compare
ABZR87_RS01640 -1.5 -3.0 TlpA disulfide reductase family protein compare
ABZR87_RS01275 -1.5 -4.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS01605 -1.5 -7.6 shikimate dehydrogenase compare
ABZR87_RS14970 -1.5 -1.8 DUF3106 domain-containing protein compare
ABZR87_RS09625 -1.5 -8.3 CobD/CbiB family protein compare
ABZR87_RS01110 -1.4 -6.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS05645 -1.4 -3.7 SDR family oxidoreductase compare
ABZR87_RS04270 -1.4 -4.7 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS00745 -1.4 -1.3 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS04265 -1.4 -5.2 phenylalanine 4-monooxygenase compare
ABZR87_RS03410 -1.4 -5.4 type II secretion system major pseudopilin GspG compare
ABZR87_RS03435 -1.4 -5.1 type II secretion system protein GspL compare
ABZR87_RS07620 -1.4 -3.2 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS11015 -1.4 -4.3 amino-acid N-acetyltransferase compare
ABZR87_RS01690 -1.4 -1.2 collagen-like triple helix repeat-containing protein compare
ABZR87_RS10120 -1.4 -1.6 YceD family protein compare
ABZR87_RS03455 -1.4 -8.5 type II secretion system ATPase GspE compare
ABZR87_RS16660 -1.4 -5.4 helix-turn-helix domain-containing protein compare
ABZR87_RS11435 -1.4 -2.8 Mth938-like domain-containing protein compare
ABZR87_RS13770 -1.4 -7.3 CoA transferase subunit A compare
ABZR87_RS20555 -1.4 -2.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS14510 -1.4 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS08655 -1.4 -1.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS10240 -1.4 -0.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS09460 -1.4 -3.4 prephenate dehydrogenase compare
ABZR87_RS13805 -1.4 -6.8 CBS domain-containing protein compare
ABZR87_RS10080 -1.4 -7.3 GTP 3',8-cyclase MoaA compare
ABZR87_RS07355 -1.4 -6.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS19020 -1.4 -9.3 multidrug efflux RND transporter permease subunit compare


Specific Phenotypes

For 1 genes in this experiment