Experiment set3IT031 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Cholin acetate 20 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_327 -3.2 -2.1 hypothetical protein compare
Pf1N1B4_4038 -2.5 -4.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_3413 -2.2 -2.9 Transcriptional regulator, LysR family compare
Pf1N1B4_4041 -2.1 -4.2 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4030 -2.0 -3.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_3998 -1.9 -5.4 putative exported protein compare
Pf1N1B4_4123 -1.8 -2.6 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_1837 -1.8 -1.3 Osmotically inducible protein C compare
Pf1N1B4_3775 -1.8 -2.5 FIG00956876: hypothetical protein compare
Pf1N1B4_2105 -1.8 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3833 -1.8 -7.8 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3168 -1.7 -3.7 AmpG permease compare
Pf1N1B4_2695 -1.7 -2.2 Rare lipoprotein A precursor compare
Pf1N1B4_3331 -1.7 -3.4 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_1057 -1.6 -2.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3582 -1.6 -2.1 C-methyltransferase compare
Pf1N1B4_5720 -1.6 -2.2 hypothetical protein compare
Pf1N1B4_2682 -1.6 -1.9 Antiholin-like protein LrgA compare
Pf1N1B4_2917 -1.6 -7.4 FIG140336: TPR domain protein compare
Pf1N1B4_5187 -1.5 -2.0 5S RNA compare
Pf1N1B4_3093 -1.5 -1.8 Outer membrane protein H precursor compare
Pf1N1B4_4611 -1.5 -2.7 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_4028 -1.4 -3.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_652 -1.4 -8.4 Sensory box histidine kinase compare
Pf1N1B4_4039 -1.4 -5.6 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4040 -1.4 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1402 -1.4 -2.5 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_4335 -1.3 -2.4 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_298 -1.3 -2.9 Transcription elongation factor GreB compare
Pf1N1B4_2939 -1.3 -4.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1565 -1.3 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2886 -1.3 -8.4 Paraquat-inducible protein B compare
Pf1N1B4_2856 -1.3 -3.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3782 -1.3 -2.0 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_5342 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_2885 -1.3 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_1307 -1.3 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3812 -1.3 -6.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_3143 -1.3 -2.8 RecA protein compare
Pf1N1B4_2004 -1.2 -2.3 putative membrane protein compare
Pf1N1B4_4285 -1.2 -2.1 Inositol transport system sugar-binding protein compare
Pf1N1B4_5224 -1.2 -2.9 tRNA-Arg-CCT compare
Pf1N1B4_4035 -1.2 -2.3 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3531 -1.2 -2.3 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_2807 -1.2 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_2526 -1.2 -9.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1544 -1.2 -5.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1462 -1.2 -8.2 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_2106 -1.2 -2.3 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3222 -1.1 -1.6 Ferredoxin compare
Pf1N1B4_3499 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_695 -1.1 -1.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1619 -1.1 -6.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_769 -1.1 -5.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1906 -1.1 -3.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1870 -1.1 -2.7 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3305 -1.1 -2.4 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_2209 -1.1 -5.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3153 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_2884 -1.1 -3.8 Paraquat-inducible protein A compare
Pf1N1B4_4051 -1.1 -2.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2949 -1.1 -1.6 FIG00956396: hypothetical protein compare
Pf1N1B4_3605 -1.1 -1.8 Flagellar motor switch protein FliG compare
Pf1N1B4_2823 -1.1 -2.1 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_2047 -1.1 -2.1 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_1554 -1.1 -4.7 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_616 -1.0 -2.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1234 -1.0 -3.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2035 -1.0 -4.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_437 -1.0 -5.3 hypothetical protein compare
Pf1N1B4_337 -1.0 -3.7 O-antigen export system permease protein RfbD compare
Pf1N1B4_4177 -1.0 -1.7 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_122 -1.0 -2.2 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_1191 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_4087 -1.0 -2.5 MISCELLANEOUS; Unknown compare
Pf1N1B4_974 -1.0 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_688 -1.0 -2.0 FIG00955483: hypothetical protein compare
Pf1N1B4_2568 -1.0 -2.1 Translation elongation factor Tu compare
Pf1N1B4_5659 -1.0 -7.0 NfuA Fe-S protein maturation compare
Pf1N1B4_336 -1.0 -7.5 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_324 -1.0 -2.0 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_5476 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_6004 -1.0 -3.5 tgtA5 cluster protein 1 compare
Pf1N1B4_5560 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_4029 -0.9 -2.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2943 -0.9 -2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4657 -0.9 -1.7 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_4533 -0.9 -2.1 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_2458 -0.9 -2.4 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_3074 -0.9 -1.7 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_5652 -0.9 -2.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_4509 -0.9 -2.2 Aldose 1-epimerase compare
Pf1N1B4_3091 -0.9 -3.3 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1210 -0.9 -2.6 membrane protein, putative compare
Pf1N1B4_1569 -0.9 -6.6 Twin-arginine translocation protein TatC compare
Pf1N1B4_2228 -0.9 -2.8 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_76 -0.9 -2.0 ATP binding protein compare
Pf1N1B4_4325 -0.9 -3.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_1335 -0.9 -3.6 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_3552 -0.9 -2.3 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_5393 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_5804 -0.9 -2.2 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_4716 -0.9 -2.1 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_350 -0.9 -4.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_998 -0.9 -3.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_2169 -0.9 -1.8 FIG00953808: hypothetical protein compare
Pf1N1B4_1637 -0.8 -1.9 FIG00954739: hypothetical protein compare
Pf1N1B4_5768 -0.8 -1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_3625 -0.8 -2.2 Flagellar synthesis regulator FleN compare
Pf1N1B4_4477 -0.8 -1.9 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_767 -0.8 -3.5 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_1705 -0.8 -2.3 SAM-dependent methyltransferases compare
Pf1N1B4_4352 -0.8 -2.0 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_2791 -0.8 -1.7 Putative inner membrane protein (Fragment) compare
Pf1N1B4_3595 -0.8 -1.6 Flagellin protein FlaG compare
Pf1N1B4_724 -0.8 -2.5 DNA-binding response regulator ColR compare
Pf1N1B4_3081 -0.8 -7.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_239 -0.8 -2.3 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_2850 -0.8 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3927 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_3997 -0.8 -2.4 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1506 -0.8 -3.4 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) compare
Pf1N1B4_5512 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_5835 -0.8 -2.4 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_5848 -0.8 -4.1 Precorrin-6A synthase (EC 2.1.1.152) compare
Pf1N1B4_2477 -0.8 -2.5 response regulator compare
Pf1N1B4_448 -0.8 -1.4 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_683 -0.8 -2.4 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_188 -0.8 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4004 -0.8 -1.7 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_1675 -0.8 -1.9 Transcriptional regulator compare
Pf1N1B4_4839 -0.8 -1.7 lipoprotein compare
Pf1N1B4_969 -0.8 -7.3 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_3506 -0.8 -3.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5433 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_5460 -0.8 -1.9 TolA protein compare
Pf1N1B4_882 -0.8 -2.0 carbonic anhydrase, family 3 compare
Pf1N1B4_1492 -0.8 -1.1 FIG00959437: hypothetical protein compare
Pf1N1B4_644 -0.8 -1.4 Cold shock protein CspC compare
Pf1N1B4_749 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_952 -0.8 -2.0 Cell division protein MraZ compare
Pf1N1B4_4437 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_3764 -0.8 -1.9 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_2935 -0.8 -1.6 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_1344 -0.7 -2.9 Urea ABC transporter, permease protein UrtB compare
Pf1N1B4_3443 -0.7 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_2959 -0.7 -2.9 FIG067310: hypothetical protein compare
Pf1N1B4_1566 -0.7 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4549 -0.7 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_4777 -0.7 -1.6 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf1N1B4_1750 -0.7 -0.9 Death on curing protein, Doc toxin compare
Pf1N1B4_32 -0.7 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_4531 -0.7 -1.7 FIG01221261: hypothetical protein compare
Pf1N1B4_971 -0.7 -5.6 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_275 -0.7 -1.5 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_1067 -0.7 -3.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_5997 -0.7 -1.7 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_2612 -0.7 -2.1 Putative transport protein compare
Pf1N1B4_3964 -0.7 -2.8 VgrG protein compare
Pf1N1B4_4135 -0.7 -2.9 hypothetical protein compare
Pf1N1B4_529 -0.7 -2.6 SoxH protein, homolog compare
Pf1N1B4_1469 -0.7 -6.1 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_5509 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_4999 -0.7 -1.4 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_3466 -0.7 -1.7 FIG00955605: hypothetical protein compare
Pf1N1B4_2489 -0.7 -3.1 Biotin synthesis protein BioH compare
Pf1N1B4_1765 -0.7 -2.3 hypothetical protein compare
Pf1N1B4_4939 -0.7 -1.4 sodium/hydrogen exchanger family protein compare
Pf1N1B4_3906 -0.7 -2.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_58 -0.7 -3.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4833 -0.7 -1.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3503 -0.7 -2.5 Two-component response regulator PfeR, enterobactin compare
Pf1N1B4_68 -0.7 -1.4 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_419 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_3524 -0.7 -1.9 FIG00955363: hypothetical protein compare
Pf1N1B4_2071 -0.7 -1.3 Protein phosphatase ImpM compare
Pf1N1B4_4303 -0.7 -2.3 DipZ protein compare
Pf1N1B4_231 -0.7 -2.5 Sensor histidine kinase compare
Pf1N1B4_5833 -0.7 -1.2 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_4972 -0.7 -1.7 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5283 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_4644 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_1570 -0.7 -1.8 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_3149 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_3212 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_1756 -0.7 -1.8 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_3730 -0.7 -1.8 Sodium-dependent transporter compare
Pf1N1B4_762 -0.7 -3.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4474 -0.7 -1.4 transcription regulator protein compare
Pf1N1B4_4960 -0.7 -1.3 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4257 -0.7 -1.4 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_866 -0.7 -1.2 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_3073 -0.7 -2.9 probable glucosyl transferase compare
Pf1N1B4_373 -0.7 -1.3 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_1001 -0.7 -3.7 Outer membrane component of tripartite multidrug resistance system compare
Pf1N1B4_4973 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_614 -0.7 -1.7 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_2734 -0.7 -1.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_3869 -0.7 -5.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_898 -0.7 -3.9 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in stress experiments

For stress Cholin acetate across organisms