Experiment set3IT031 for Pseudomonas syringae pv. syringae B728a
epiphytic; Green bean
Group: in plantaMedia:
Culturing: SyringaeB728a_ML2
By: Tyler Helmann on 3/9/18
Specific Phenotypes
For 2 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Phosphate metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Fatty acid metabolism
- Valine, leucine and isoleucine degradation
- Geraniol degradation
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Brassinosteroid biosynthesis
- Caprolactam degradation
- Biosynthesis of terpenoids and steroids
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| polyphosphate metabolism | 2 | 2 | 1 |
| adipate degradation | 5 | 5 | 1 |
| fatty acid salvage | 6 | 6 | 1 |
| ppGpp metabolism | 6 | 6 | 1 |
| oleate β-oxidation | 35 | 30 | 3 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 9 | 1 |