Experiment set3IT031 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07845 -5.1 -5.7 LL-diaminopimelate aminotransferase compare
MMP_RS03450 -5.0 -3.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS07345 -4.6 -9.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS05500 -4.3 -16.6 2-isopropylmalate synthase compare
MMP_RS00300 -4.2 -1.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05285 -4.2 -16.0 MMPL family transporter compare
MMP_RS05280 -4.2 -22.2 COG1361 S-layer family protein compare
MMP_RS03315 -4.2 -2.9 ferrous iron transport protein A compare
MMP_RS03110 -4.2 -10.5 glycosyltransferase family 2 protein compare
MMP_RS01455 -4.1 -13.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03435 -4.0 -4.0 ketol-acid reductoisomerase compare
MMP_RS01175 -3.8 -7.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07730 -3.8 -4.1 pyruvate synthase subunit beta compare
MMP_RS04215 -3.3 -13.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06375 -3.3 -9.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06680 -3.2 -17.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06685 -3.1 -19.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06730 -3.1 -4.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS06270 -3.1 -7.8 TIGR00300 family protein compare
MMP_RS06175 -3.0 -10.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS04710 -3.0 -3.2 hypothetical protein compare
MMP_RS00750 -2.8 -5.0 fumarate hydratase compare
MMP_RS01700 -2.8 -2.0 dihydroxy-acid dehydratase compare
MMP_RS06700 -2.7 -16.0 hypothetical protein compare
MMP_RS05290 -2.7 -11.6 TetR/AcrR family transcriptional regulator compare
MMP_RS04780 -2.7 -4.2 ribonuclease P compare
MMP_RS01380 -2.7 -7.7 PHP domain-containing protein compare
MMP_RS06110 -2.6 -4.8 ATP-dependent protease LonB compare
MMP_RS07090 -2.6 -14.2 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01755 -2.6 -2.9 DUF2097 domain-containing protein compare
MMP_RS03035 -2.6 -5.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08460 -2.5 -4.1 proteasome-activating nucleotidase compare
MMP_RS07330 -2.5 -17.7 membrane protein compare
MMP_RS06345 -2.4 -12.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07635 -2.4 -8.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03960 -2.4 -2.0 hypothetical protein compare
MMP_RS05250 -2.4 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00305 -2.4 -3.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS00915 -2.3 -8.6 DUF116 domain-containing protein compare
MMP_RS04890 -2.3 -1.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05640 -2.2 -9.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06295 -2.2 -9.7 methanogenesis marker 14 protein compare
MMP_RS03700 -2.2 -11.0 sodium:proton antiporter compare
MMP_RS05265 -2.2 -3.1 2-isopropylmalate synthase compare
MMP_RS03640 -2.2 -5.7 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05930 -2.2 -3.9 3-isopropylmalate dehydratase large subunit compare
MMP_RS08715 -2.2 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06230 -2.2 -4.2 helix-turn-helix domain-containing protein compare
MMP_RS07580 -2.2 -4.6 DUF356 domain-containing protein compare
MMP_RS07795 -2.2 -14.5 site-2 protease family protein compare
MMP_RS07185 -2.1 -14.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02900 -2.1 -1.2 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01925 -2.1 -10.2 DUF1616 domain-containing protein compare
MMP_RS06355 -2.0 -4.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07820 -2.0 -8.6 UPF0104 family protein compare
MMP_RS02280 -2.0 -1.4 DUF211 domain-containing protein compare
MMP_RS04585 -2.0 -12.1 AIR synthase related protein compare
MMP_RS08745 -1.9 -9.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08635 -1.9 -2.8 UbiA family prenyltransferase compare
MMP_RS07075 -1.9 -4.9 phosphomannomutase/phosphoglucomutase compare
MMP_RS01795 -1.9 -2.9 methanogenesis marker 6 protein compare
MMP_RS07005 -1.9 -1.2 4Fe-4S binding protein compare
MMP_RS02240 -1.9 -5.2 methanogenesis marker 7 protein compare
MMP_RS03445 -1.9 -1.9 methanogenesis marker 17 protein compare
MMP_RS01960 -1.9 -0.9 hypothetical protein compare
MMP_RS03015 -1.8 -8.9 GTP 3' 8-cyclase MoaA compare
MMP_RS07350 -1.8 -1.7 preprotein translocase subunit Sec61beta compare
MMP_RS08210 -1.8 -3.7 phosphatidylglycerophosphatase A compare
MMP_RS07390 -1.8 -5.7 cell division protein FtsZ compare
MMP_RS01975 -1.8 -12.6 hypothetical protein compare
MMP_RS08300 -1.8 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS03025 -1.8 -6.8 molybdenum cofactor guanylyltransferase compare
MMP_RS05430 -1.8 -2.4 TIGR00288 family NYN domain-containing protein compare
MMP_RS05550 -1.8 -1.2 cation:proton antiporter compare
MMP_RS01895 -1.7 -11.3 flippase compare
MMP_RS03600 -1.7 -3.4 triose-phosphate isomerase compare
MMP_RS05515 -1.7 -9.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06350 -1.7 -9.1 HesA/MoeB/ThiF family protein compare
MMP_RS01900 -1.7 -10.6 hypothetical protein compare
MMP_RS07545 -1.7 -1.5 HTH domain-containing protein compare
MMP_RS07380 -1.7 -3.7 transcription elongation factor Spt5 compare
MMP_RS03580 -1.7 -4.5 signal recognition particle-docking protein FtsY compare
MMP_RS01005 -1.6 -2.6 riboflavin synthase compare
MMP_RS06715 -1.6 -13.8 cache domain-containing protein compare
MMP_RS03390 -1.6 -7.1 malate dehydrogenase compare
MMP_RS04870 -1.6 -5.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS06670 -1.6 -7.0 glucose-6-phosphate isomerase compare
MMP_RS02085 -1.6 -8.7 inosine/xanthosine triphosphatase compare
MMP_RS06625 -1.6 -3.5 DNA primase compare
MMP_RS06630 -1.6 -2.1 UPF0058 family protein compare
MMP_RS03020 -1.5 -6.4 peptidylprolyl isomerase compare
MMP_RS03400 -1.5 -3.7 archease compare
MMP_RS08650 -1.5 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01020 -1.5 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04615 -1.5 -4.4 PDGLE domain-containing protein compare
MMP_RS07605 -1.4 -5.1 diadenylate cyclase compare
MMP_RS06770 -1.4 -7.0 DHH family phosphoesterase compare
MMP_RS06720 -1.4 -7.5 response regulator transcription factor compare
MMP_RS00720 -1.4 -8.4 metal-dependent hydrolase compare
MMP_RS07200 -1.4 -7.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01365 -1.4 -4.8 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06020 -1.4 -5.9 archaeoflavoprotein AfpA compare
MMP_RS01935 -1.3 -10.5 DUF58 domain-containing protein compare
MMP_RS02800 -1.3 -7.7 nucleotidyltransferase domain-containing protein compare
MMP_RS05345 -1.3 -6.3 hypothetical protein compare
MMP_RS04955 -1.3 -3.8 DNA topoisomerase I compare
MMP_RS07365 -1.3 -9.6 2-phosphoglycerate kinase compare
MMP_RS01915 -1.3 -7.9 DUF354 domain-containing protein compare
MMP_RS05635 -1.3 -9.8 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS04090 -1.3 -3.2 hypothetical protein compare
MMP_RS06400 -1.2 -2.1 4Fe-4S binding protein compare
MMP_RS01930 -1.2 -9.5 hypothetical protein compare
MMP_RS09020 -1.2 -2.3 hypothetical protein compare
MMP_RS01940 -1.2 -4.5 MoxR family ATPase compare
MMP_RS01910 -1.2 -8.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS07420 -1.2 -5.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01955 -1.2 -2.7 hypothetical protein compare
MMP_RS06940 -1.2 -3.9 polyprenyl diphosphate synthase compare
MMP_RS07875 -1.2 -6.1 hypothetical protein compare
MMP_RS08820 -1.2 -4.7 hypothetical protein compare
MMP_RS00685 -1.2 -3.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01945 -1.2 -7.9 DUF4350 domain-containing protein compare
MMP_RS00695 -1.2 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01950 -1.2 -5.8 hypothetical protein compare
MMP_RS01500 -1.2 -2.2 CBS domain-containing protein compare
MMP_RS03475 -1.2 -0.9 hypothetical protein compare
MMP_RS08720 -1.2 -1.8 4Fe-4S binding protein compare
MMP_RS01885 -1.1 -5.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01890 -1.1 -3.0 nucleotide sugar dehydrogenase compare
MMP_RS03485 -1.1 -5.6 TIGR00267 family protein compare
MMP_RS04620 -1.1 -7.7 cobalt transporter CbiM compare
MMP_RS03210 -1.1 -9.2 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS07735 -1.1 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01905 -1.1 -7.1 glycosyltransferase compare
MMP_RS01265 -1.1 -1.6 hypothetical protein compare
MMP_RS05925 -1.1 -4.1 small nuclear ribonucleoprotein compare
MMP_RS00155 -1.1 -5.6 heavy metal-binding domain-containing protein compare
MMP_RS08600 -1.1 -3.2 flagellar protein D compare
MMP_RS01800 -1.1 -4.3 TIGR00303 family protein compare
MMP_RS06285 -1.1 -2.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05425 -1.1 -4.0 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS05555 -1.1 -1.7 DUF4040 domain-containing protein compare
MMP_RS01725 -1.1 -4.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS01720 -1.1 -0.8 replication factor C large subunit compare
MMP_RS05875 -1.1 -3.4 hydroxyethylthiazole kinase compare
MMP_RS02145 -1.1 -4.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS08155 -1.0 -6.2 hypothetical protein compare
MMP_RS06895 -1.0 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS04605 -1.0 -5.0 cobalt ECF transporter T component CbiQ compare
MMP_RS06120 -1.0 -2.6 UPF0147 family protein compare
MMP_RS01880 -1.0 -5.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08435 -1.0 -2.4 Era-like GTP-binding protein compare
MMP_RS01325 -1.0 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS05245 -1.0 -8.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS08660 -1.0 -5.2 DHH family phosphoesterase compare
MMP_RS04685 -1.0 -3.1 DUF126 domain-containing protein compare
MMP_RS07445 -1.0 -3.5 helix-turn-helix domain-containing protein compare
MMP_RS06340 -1.0 -5.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01875 -1.0 -5.0 N-acetyltransferase compare
MMP_RS00515 -1.0 -1.2 DUF655 domain-containing protein compare
MMP_RS02110 -0.9 -2.8 hypothetical protein compare
MMP_RS01830 -0.9 -2.0 tRNA-Val compare
MMP_RS01970 -0.9 -6.3 TIGR04279 domain-containing protein compare
MMP_RS06925 -0.9 -2.9 ribonuclease VapC4 compare
MMP_RS07790 -0.9 -6.0 segregation/condensation protein A compare
MMP_RS01610 -0.9 -3.0 hypothetical protein compare
MMP_RS08605 -0.9 -3.3 flagellar protein E compare
MMP_RS04775 -0.9 -3.0 adenosylhomocysteinase compare
MMP_RS08840 -0.9 -5.4 class I SAM-dependent methyltransferase compare
MMP_RS08590 -0.9 -4.3 flagellin compare
MMP_RS08440 -0.8 -3.0 cell division protein SepF compare
MMP_RS03590 -0.8 -4.5 METTL5 family protein compare
MMP_RS00910 -0.8 -3.4 2-phosphosulfolactate phosphatase compare
MMP_RS06865 -0.8 -2.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02195 -0.8 -3.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07955 -0.8 -2.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS05920 -0.8 -0.7 50S ribosomal protein L37e compare
MMP_RS04875 -0.8 -4.0 energy-converting hydrogenase B subunit P compare
MMP_RS02780 -0.8 -5.3 hypothetical protein compare
MMP_RS07600 -0.8 -2.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03535 -0.8 -2.0 helix-turn-helix transcriptional regulator compare
MMP_RS06705 -0.8 -4.6 formate/nitrite transporter family protein compare
MMP_RS01920 -0.8 -5.6 glycosyltransferase family 2 protein compare
MMP_RS02135 -0.8 -3.6 DUF5612 domain-containing protein compare
MMP_RS06105 -0.8 -4.7 hydrogenase maturation peptidase HycI compare
MMP_RS05535 -0.8 -2.5 hypothetical protein compare
MMP_RS08675 -0.7 -2.9 class III signal peptide-containing protein compare
MMP_RS03115 -0.7 -4.2 hypothetical protein compare
MMP_RS01030 -0.7 -2.4 MTAP family purine nucleoside phosphorylase compare
MMP_RS05540 -0.7 -2.5 hypothetical protein compare
MMP_RS03550 -0.7 -2.1 DUF2124 domain-containing protein compare
MMP_RS04480 -0.7 -6.3 lysine 2 3-aminomutase compare
MMP_RS07555 -0.7 -0.6 monovalent cation/H+ antiporter subunit E compare
MMP_RS06970 -0.7 -4.1 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS01085 -0.7 -1.6 hypothetical protein compare
MMP_RS01580 -0.7 -4.2 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS05440 -0.6 -4.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS00185 -0.6 -5.3 potassium channel protein compare
MMP_RS05020 -0.6 -1.7 hypothetical protein compare
MMP_RS08855 -0.6 -4.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nutrient t1 Sodium acetate in Methanococcus maripaludis S2

For nutrient t1 Sodium acetate across organisms