Experiment set3IT031 for Caulobacter crescentus NA1000

Compare to:

PYE with Sodium nitrite 1.25 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01815 +2.8 19.9 nitrogen assimilation regulatory protein NtrC compare
CCNA_01712 +2.7 22.8 CopY/TcrY family transcriptional repressor compare
CCNA_02000 +2.7 7.3 SSU ribosomal protein S2P compare
CCNA_01814 +2.6 17.1 nitrogen regulation protein ntrB compare
CCNA_01979 +2.6 14.3 LexA repressor compare
CCNA_01242 +2.6 18.0 amino acid permease compare
CCNA_02836 +2.5 11.9 hypothetical protein compare
CCNA_02026 +2.5 17.1 hypothetical protein compare
CCNA_02030 +2.4 6.9 hypothetical protein compare
CCNA_00699 +2.4 12.4 LSU ribosomal protein L28P compare
CCNA_02025 +2.4 13.1 hypothetical protein compare
CCNA_02103 +2.4 17.7 hypothetical protein compare
CCNA_03064 +2.3 16.6 PadR-family transcriptional regulator compare
CCNA_01059 +2.3 20.9 S-layer protein rsaA compare
CCNA_02591 +2.3 8.3 glutaredoxin compare
CCNA_00954 +2.2 16.1 AAA-family response regulator flbD compare
CCNA_01420 +2.2 11.0 NrdR family transcriptional regulator compare
CCNA_01790 +2.2 9.1 protein translocase subunit secG compare
CCNA_02910 +2.2 17.0 TonB-dependent receptor compare
CCNA_01361 +2.2 4.9 PepSY superfamily protein compare
CCNA_01526 +2.2 9.1 flagellar biosynthesis regulatory protein flaF compare
CCNA_01730 +2.2 12.0 amidophosphoribosyltransferase compare
CCNA_03252 +2.2 17.8 CopY/TcrY-family transcriptional regulator compare
CCNA_01525 +2.1 11.2 flagellar biosynthesis repressor flbT compare
CCNA_02644 +2.1 7.1 cell division protein FtsL compare
CCNA_02980 +2.1 14.0 tryptophan 2,3-dioxygenase compare
CCNA_03043 +2.1 7.9 type IV pilin protein pilA compare
CCNA_01942 +2.1 9.8 Rrf2 family protein compare
CCNA_R0037 +2.1 10.3 tRNA-Glu compare
CCNA_03030 +2.1 9.9 cytochrome c2 compare
CCNA_01094 +2.1 4.9 hypothetical protein compare
CCNA_03287 +2.1 12.8 PadR-family transcriptional regulator compare
CCNA_02957 +2.1 7.1 ArsR-family transcriptional regulator compare
CCNA_02328 +2.0 1.6 cell cycle regulatory protein GcrA compare
CCNA_01840 +2.0 16.9 MerR-family transcriptional regulator compare
CCNA_00924 +2.0 11.9 MarR/EmrR family transcriptional regulator compare
CCNA_01964 +2.0 7.2 NADH dehydrogenase compare
CCNA_01655 +2.0 11.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01851 +2.0 15.7 quinol cytochrome oxidase polypeptide II compare
CCNA_03289 +2.0 14.0 HicB-family RNA-binding protein compare
CCNA_02646 +2.0 3.8 cell division protein MraZ compare
CCNA_01573 +1.9 10.7 ArsR-family transcriptional regulator compare
CCNA_00518 +1.9 11.0 LSU ribosomal protein L25P compare
CCNA_03961 +1.9 7.6 hypothetical protein compare
CCNA_01453 +1.9 7.2 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_02835 +1.9 8.4 CpxP-related protein compare
CCNA_00521 +1.9 6.3 antitoxin protein compare
CCNA_02846 +1.9 13.4 DegP/HtrA-family serine protease compare
CCNA_00950 +1.9 13.2 flagellar M-ring protein FliF compare
CCNA_02663 +1.9 3.5 DnaK suppressor protein DksA compare
CCNA_00781 +1.9 14.3 two-component receiver protein CpdR compare
CCNA_01931 +1.9 12.1 TetR-family transcriptional regulator compare
CCNA_03951 +1.9 10.4 hypothetical protein compare
CCNA_00769 +1.8 9.1 TetR family transcriptional regulator compare
CCNA_02021 +1.8 6.5 hypothetical protein compare
CCNA_00999 +1.8 7.0 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_03271 +1.8 12.4 methionine gamma-lyase compare
CCNA_03519 +1.8 11.5 PadR-family transcriptional regulator compare
CCNA_00944 +1.8 9.7 flagellar hook length determination protein compare
CCNA_01684 +1.8 9.8 phenylalanine-4-hydroxylase compare
CCNA_00162 +1.8 14.3 hypothetical protein compare
CCNA_03612 +1.8 10.9 HTH XRE-family transcriptional regulator compare
CCNA_01801 +1.8 8.6 hypothetical protein compare
CCNA_02448 +1.8 9.9 hypothetical protein compare
CCNA_00846 +1.8 15.2 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00161 +1.8 14.3 hypothetical protein compare
CCNA_02225 +1.8 9.2 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_01578 +1.8 11.6 beta-lactamase repressor compare
CCNA_03989 +1.7 13.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03012 +1.7 11.9 peroxiredoxin compare
CCNA_02732 +1.7 4.9 hypothetical protein compare
CCNA_03936 +1.7 7.9 hypothetical protein compare
CCNA_03280 +1.7 14.8 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02042 +1.7 11.0 trigger factor chaperone compare
CCNA_01775 +1.7 8.2 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_01624 +1.7 5.1 orotate phosphoribosyltransferase compare
CCNA_01690 +1.7 5.6 MAPEG family membrane protein compare
CCNA_01968 +1.7 4.6 pentapeptide repeats containing protein compare
CCNA_00939 +1.7 6.9 MarR-family transcriptional regulator compare
CCNA_03325 +1.7 6.9 hypothetical protein compare
CCNA_00947 +1.7 13.0 flagellar hook protein FlgE compare
CCNA_02619 +1.7 12.8 stomatin/prohibitin-related protein compare
CCNA_02447 +1.7 9.9 PspA/IM30 family regulatory protein compare
CCNA_00684 +1.7 10.3 anti-sigma factor, ChrR-family compare
CCNA_00392 +1.7 12.7 dihydroorotase compare
CCNA_03123 +1.7 9.2 ArsR-family transcriptional regulator compare
CCNA_02004 +1.7 4.3 SOS-induced inhibitor of cell division SidA compare
CCNA_03136 +1.7 7.7 flagellar export protein FliJ compare
CCNA_01186 +1.7 6.8 hypothetical protein compare
CCNA_00080 +1.7 2.2 LexA-related transcriptional repressor compare
CCNA_01804 +1.7 10.6 glutathione peroxidase compare
CCNA_01774 +1.7 1.9 phosphoribosylglycinamide formyltransferase compare
CCNA_01742 +1.6 6.9 hypothetical protein compare
CCNA_02037 +1.6 11.1 ATP-dependent endopeptidase Lon compare
CCNA_00951 +1.6 10.6 flagellar motor switch protein FliG compare
CCNA_00505 +1.6 8.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03964 +1.6 3.4 hypothetical protein compare
CCNA_02617 +1.6 12.5 histidinol-phosphate aminotransferase compare
CCNA_03479 +1.6 8.7 MarR-family transcriptional regulator compare
CCNA_03938 +1.6 5.6 hypothetical protein compare
CCNA_02063 +1.6 6.9 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_01324 +1.6 5.1 LSU ribosomal protein L30P compare
CCNA_03805 +1.6 10.4 PadR-family transcriptional regulator compare
CCNA_01913 +1.6 10.8 MarR-family transcriptional regulator compare
CCNA_01058 +1.6 6.7 helix-turn-helix transcriptional regulator compare
CCNA_02575 +1.6 4.0 hypothetical protein compare
CCNA_00952 +1.6 8.7 flagellar assembly protein FlbE/FliH compare
CCNA_02616 +1.6 10.9 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01923 +1.6 8.2 ATP-dependent RNA helicase compare
CCNA_00562 +1.6 11.6 dihydroorotate dehydrogenase compare
CCNA_00945 +1.6 8.9 chemotaxis protein MotD compare
CCNA_01739 +1.6 8.7 LSU ribosomal protein L9P compare
CCNA_00962 +1.6 7.7 MarR-family transcriptional regulator compare
CCNA_02339 +1.6 9.7 methyltransferase compare
CCNA_01848 +1.6 11.6 quinol cytochrome oxidase polypeptide IV compare
CCNA_02586 +1.6 9.2 phosphoribosylformylglycinamidine synthase II compare
CCNA_02242 +1.6 9.7 PHB granule-associated protein, phasin2 compare
CCNA_03689 +1.6 11.3 alanine dehydrogenase compare
CCNA_01802 +1.5 3.4 hypothetical protein compare
CCNA_00527 +1.5 8.7 hypothetical protein compare
CCNA_01678 +1.5 8.2 arginine N-succinyltransferase, beta chain compare
CCNA_00153 +1.5 7.2 adenine nucleotide exchange factor GrpE compare
CCNA_01780 +1.5 10.9 exopolyphosphatase compare
CCNA_03281 +1.5 12.4 AsnC-family transcriptional regulator compare
CCNA_03129 +1.5 10.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02081 +1.5 6.8 Sec-independent protein translocase protein tatB compare
CCNA_01528 +1.5 9.1 flagellin fljK compare
CCNA_03062 +1.5 8.9 cell wall hydrolase family protein compare
CCNA_00459 +1.5 9.9 Na+/H+ antiporter nhaA compare
CCNA_03893 +1.5 4.9 hypothetical protein compare
CCNA_01813 +1.5 8.2 tRNA-dihydrouridine synthase compare
CCNA_00953 +1.5 6.2 flagellar motor switch protein FliN compare
CCNA_01415 +1.5 10.5 methyltransferase compare
CCNA_01850 +1.5 11.8 quinol cytochrome oxidase polypeptide I compare
CCNA_02133 +1.5 7.2 glucokinase compare
CCNA_00946 +1.5 7.9 Basal-body rod modification protein FlgD compare
CCNA_03420 +1.5 8.8 hypothetical protein compare
CCNA_01181 +1.5 7.7 hypothetical protein compare
CCNA_01679 +1.4 8.9 succinylglutamic semialdehyde dehydrogenase compare
CCNA_02135 +1.4 7.5 6-phosphogluconolactonase compare
CCNA_01541 +1.4 9.0 LysR-family transcriptional regulator compare
CCNA_02073 +1.4 5.3 cupin domain transcriptional regulator compare
CCNA_00756 +1.4 3.0 hypothetical protein compare
CCNA_01849 +1.4 9.1 quinol cytochrome oxidase polypeptide III compare
CCNA_02567 +1.4 9.2 sensory transduction histidine kinase pleC compare
CCNA_01006 +1.4 5.3 flagellar hook-basal body complex protein FliE compare
CCNA_02134 +1.4 10.5 phosphogluconate dehydratase compare
CCNA_02341 +1.4 7.9 small heat shock protein compare
CCNA_01681 +1.4 5.0 RimI-like acetyltransferase compare
CCNA_01926 +1.4 6.8 GGDEF diguanylate cyclase DgcB compare
CCNA_01619 +1.4 7.8 NYN domain protein compare
CCNA_02316 +1.4 8.1 hypothetical protein compare
CCNA_00447 +1.4 8.7 chemotaxis protein cheD compare
CCNA_01129 +1.4 5.0 flagellar biosynthesis protein FliQ compare
CCNA_00104 +1.4 9.2 orotidine 5'-phosphate decarboxylase compare
CCNA_01752 +1.4 7.4 YicC-family protein compare
CCNA_03089 +1.4 7.1 hypothetical protein compare
CCNA_03372 +1.3 4.1 bacterioferritin-associated ferredoxin compare
CCNA_00998 +1.3 6.4 ROS/MUCR transcriptional regulator compare
CCNA_02289 +1.3 9.7 MarR/EmrR family transcriptional regulator compare
CCNA_01008 +1.3 10.2 urocanate hydratase compare
CCNA_01339 +1.3 6.5 ArsR-family transcriptional regulator compare
CCNA_01505 +1.3 3.0 hypothetical protein compare
CCNA_01731 +1.3 5.9 colicin V production protein CvpA compare
CCNA_02297 +1.3 6.1 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_02546 +1.3 9.3 GGDEF/response regulator protein PleD compare
CCNA_00375 +1.3 5.2 hypothetical protein compare
CCNA_02140 +1.3 7.1 flagellar motor switch protein fliM compare
CCNA_02330 +1.3 5.2 hypothetical protein compare
CCNA_01375 +1.3 5.1 lactoylglutathione lyase compare
CCNA_03215 +1.3 8.5 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_00299 +1.3 6.9 phosphoribosylamine--glycine ligase compare
CCNA_03609 +1.3 5.8 outer membrane protein compare
CCNA_00542 +1.3 4.2 hypothetical protein compare
CCNA_00726 +1.3 9.5 acyl-CoA dehydrogenase compare
CCNA_00368 +1.3 9.3 phosphonates transport system permease protein phnE compare
CCNA_00013 +1.3 10.6 protein-PII uridylyltransferase compare
CCNA_00400 +1.3 7.3 MarR/EmrR-family transcriptional regulator compare
CCNA_00920 +1.3 4.2 hypothetical protein compare
CCNA_02367 +1.3 9.2 CelR-family transcriptional regulator compare
CCNA_00441 +1.3 6.3 chemotaxis receiver domain protein cheYI compare
CCNA_01433 +1.3 4.2 integration host factor alpha-subunit compare
CCNA_01235 +1.3 7.3 AcrR-family transcriptional regulator compare
CCNA_00895 +1.3 6.3 hypothetical protein compare
CCNA_00834 +1.2 5.8 flagellin FljM compare
CCNA_01552 +1.2 9.0 polar localization protein TipN compare
CCNA_03379 +1.2 2.2 Cro/CI family transcriptional regulator compare
CCNA_01061 +1.2 4.9 type I secretion adaptor protein RsaE compare
CCNA_00919 +1.2 5.0 hypothetical protein compare
CCNA_02324 +1.2 7.1 heat shock protein 33 hsp33 compare
CCNA_02526 +1.2 9.2 dihydroorotase compare
CCNA_03464 +1.2 5.1 glycine cleavage system H protein compare
CCNA_03518 +1.2 8.8 cytochrome c oxidase polypeptide II coxB compare
CCNA_02156 +1.2 8.4 hypothetical protein compare
CCNA_02878 +1.2 1.3 hypothetical protein compare
CCNA_00354 +1.2 7.4 NlpC/P60 CHAP domain amidase protein compare
CCNA_01959 +1.2 2.4 3-dehydroquinate dehydratase compare
CCNA_00347 +1.2 4.0 hypothetical protein compare
CCNA_01116 +1.2 8.3 histidine protein kinase DivJ compare
CCNA_01193 +1.2 9.3 amylosucrase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Caulobacter crescentus NA1000

For stress Sodium nitrite across organisms