Experiment set3IT031 for Ralstonia sp. UNC404CL21Col

Compare to:

no_plant_soil sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.9 -5.5 NUDIX domain-containing protein compare
ABZR87_RS01255 -6.8 -15.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS08630 -6.7 -4.6 dihydroorotase compare
ABZR87_RS15805 -6.7 -6.5 IclR family transcriptional regulator compare
ABZR87_RS02155 -6.6 -7.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS02160 -6.1 -7.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14500 -6.0 -14.6 tryptophan synthase subunit beta compare
ABZR87_RS14505 -6.0 -7.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS05100 -6.0 -4.1 RNA polymerase-binding protein DksA compare
ABZR87_RS05305 -5.9 -12.1 TetR family transcriptional regulator compare
ABZR87_RS02145 -5.9 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02640 -5.9 -15.8 diaminopimelate decarboxylase compare
ABZR87_RS02570 -5.9 -24.3 glutamate synthase-related protein compare
ABZR87_RS02140 -5.7 -20.1 anthranilate synthase component I compare
ABZR87_RS07380 -5.7 -12.1 FAD/FMN-binding oxidoreductase compare
ABZR87_RS08695 -5.5 -20.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS02385 -5.5 -5.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS14540 -5.4 -7.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02445 -5.2 -3.6 Sec-independent protein translocase protein TatB compare
ABZR87_RS14530 -5.2 -6.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS02595 -5.2 -11.6 shikimate kinase compare
ABZR87_RS20880 -5.2 -11.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02590 -5.2 -12.1 3-dehydroquinate synthase compare
ABZR87_RS13790 -5.2 -9.9 chorismate synthase compare
ABZR87_RS02380 -5.1 -11.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS02565 -5.0 -6.9 glutamate synthase subunit beta compare
ABZR87_RS20875 -4.9 -9.4 LysR family transcriptional regulator compare
ABZR87_RS04975 -4.9 -3.4 peptide deformylase compare
ABZR87_RS09465 -4.9 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS05200 -4.9 -18.3 homoserine O-acetyltransferase compare
ABZR87_RS07510 -4.8 -4.7 LysR family transcriptional regulator compare
ABZR87_RS14490 -4.8 -10.3 tryptophan synthase subunit alpha compare
ABZR87_RS22920 -4.7 -7.7 phosphogluconate dehydratase compare
ABZR87_RS02440 -4.6 -8.2 twin-arginine translocase subunit TatC compare
ABZR87_RS02375 -4.5 -11.7 cytochrome c1 compare
ABZR87_RS02550 -4.5 -5.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS13250 -4.5 -3.9 phosphoserine phosphatase SerB compare
ABZR87_RS00435 -4.5 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS06495 -4.4 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS14535 -4.4 -6.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS21285 -4.4 -3.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS09450 -4.3 -7.5 prephenate dehydratase compare
ABZR87_RS08970 -4.3 -9.5 protein TolQ compare
ABZR87_RS09515 -4.2 -2.9 cysteine synthase CysM compare
ABZR87_RS07050 -4.2 -2.7 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS02655 -4.2 -11.9 anti-sigma factor compare
ABZR87_RS16170 -4.2 -2.9 argininosuccinate lyase compare
ABZR87_RS22970 -4.2 -13.0 cystathionine gamma-synthase family protein compare
ABZR87_RS13475 -4.1 -8.4 PAS domain S-box protein compare
ABZR87_RS02075 -4.1 -3.8 23S ribosomal RNA compare
ABZR87_RS12785 -4.1 -2.8 endopeptidase La compare
ABZR87_RS02035 -4.0 -7.0 substrate-binding domain-containing protein compare
ABZR87_RS04865 -4.0 -4.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02545 -4.0 -7.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS07035 -3.9 -6.6 RNase adapter RapZ compare
ABZR87_RS14115 -3.9 -2.7 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS09445 -3.8 -11.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS16960 -3.7 -5.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08795 -3.6 -5.5 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS04940 -3.6 -7.3 PAS domain-containing sensor histidine kinase compare
ABZR87_RS08990 -3.6 -6.7 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS13175 -3.6 -2.4 tRNA-Leu compare
ABZR87_RS01240 -3.5 -10.9 catalase/peroxidase HPI compare
ABZR87_RS06350 -3.4 -10.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS01855 -3.3 -12.4 A24 family peptidase compare
ABZR87_RS16185 -3.3 -3.2 dCTP deaminase compare
ABZR87_RS13285 -3.3 -10.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10170 -3.2 -4.1 RseA family anti-sigma factor compare
ABZR87_RS01645 -3.2 -4.5 type II 3-dehydroquinate dehydratase compare
ABZR87_RS08700 -3.2 -8.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS13705 -3.2 -2.4 integration host factor subunit alpha compare
ABZR87_RS02555 -3.1 -7.6 ABC transporter ATP-binding protein compare
ABZR87_RS10980 -3.1 -1.7 tRNA-Leu compare
ABZR87_RS11790 -3.1 -3.0 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS09935 -3.1 -2.2 amino acid aminotransferase compare
ABZR87_RS01245 -3.1 -2.1 Dps family protein compare
ABZR87_RS07735 -3.1 -5.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS12790 -3.0 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS03410 -3.0 -6.9 type II secretion system major pseudopilin GspG compare
ABZR87_RS08985 -3.0 -12.5 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS10120 -3.0 -1.8 YceD family protein compare
ABZR87_RS14965 -2.9 -4.1 DUF3619 family protein compare
ABZR87_RS01810 -2.9 -3.5 glutamate 5-kinase compare
ABZR87_RS09615 -2.9 -1.8 50S ribosomal protein L19 compare
ABZR87_RS08625 -2.9 -2.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00875 -2.9 -4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS13300 -2.8 -8.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01225 -2.8 -4.6 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS02535 -2.7 -6.3 phospholipid-binding protein MlaC compare
ABZR87_RS06705 -2.7 -13.4 glutamate--cysteine ligase compare
ABZR87_RS03460 -2.7 -11.7 type II secretion system inner membrane protein GspF compare
ABZR87_RS01615 -2.7 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS03430 -2.6 -11.6 type II secretion system minor pseudopilin GspK compare
ABZR87_RS03435 -2.6 -6.7 type II secretion system protein GspL compare
ABZR87_RS02540 -2.6 -7.9 VacJ family lipoprotein compare
ABZR87_RS07625 -2.6 -2.5 Holliday junction branch migration protein RuvA compare
ABZR87_RS06845 -2.6 -9.5 heme o synthase compare
ABZR87_RS07635 -2.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS11440 -2.6 -7.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS08750 -2.6 -6.4 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS03440 -2.5 -5.4 type II secretion system protein GspM compare
ABZR87_RS05590 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABZR87_RS15715 -2.5 -8.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS06745 -2.5 -7.2 S41 family peptidase compare
ABZR87_RS03450 -2.5 -13.9 type II secretion system secretin GspD compare
ABZR87_RS08980 -2.5 -3.0 cell envelope integrity protein TolA compare
ABZR87_RS07360 -2.5 -10.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS04125 -2.5 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS03425 -2.5 -6.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS00970 -2.5 -1.7 molecular chaperone DnaJ compare
ABZR87_RS19010 -2.5 -2.3 acyloxyacyl hydrolase compare
ABZR87_RS05065 -2.4 -4.4 tyrosine recombinase XerC compare
ABZR87_RS21950 -2.4 -14.0 hypothetical protein compare
ABZR87_RS16735 -2.4 -13.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS01085 -2.4 -3.7 rhombosortase compare
ABZR87_RS04995 -2.3 -3.1 DNA topoisomerase III compare
ABZR87_RS17650 -2.3 -6.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04235 -2.3 -8.2 heavy metal translocating P-type ATPase compare
ABZR87_RS03455 -2.3 -9.3 type II secretion system ATPase GspE compare
ABZR87_RS00835 -2.3 -1.6 argininosuccinate synthase compare
ABZR87_RS06645 -2.3 -1.6 TlpA disulfide reductase family protein compare
ABZR87_RS05350 -2.2 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS12150 -2.2 -4.4 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS11435 -2.2 -3.3 Mth938-like domain-containing protein compare
ABZR87_RS10785 -2.2 -3.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS05205 -2.1 -5.6 methionine biosynthesis protein MetW compare
ABZR87_RS02850 -2.1 -3.5 elongation factor Tu compare
ABZR87_RS05645 -2.1 -5.0 SDR family oxidoreductase compare
ABZR87_RS11160 -2.1 -6.0 cytochrome-c oxidase, cbb3-type subunit III compare
ABZR87_RS13770 -2.1 -12.2 CoA transferase subunit A compare
ABZR87_RS08650 -2.1 -9.7 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS11010 -2.1 -2.4 oxidative damage protection protein compare
ABZR87_RS10175 -2.1 -6.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS04105 -2.1 -5.7 ATP synthase subunit I compare
ABZR87_RS06400 -2.0 -10.2 response regulator transcription factor compare
ABZR87_RS00795 -2.0 -3.8 site-specific tyrosine recombinase XerD compare
ABZR87_RS13415 -2.0 -5.4 IclR family transcriptional regulator compare
ABZR87_RS14190 -2.0 -9.6 DUF2589 domain-containing protein compare
ABZR87_RS17310 -2.0 -6.9 PadR family transcriptional regulator compare
ABZR87_RS01605 -2.0 -8.3 shikimate dehydrogenase compare
ABZR87_RS14375 -1.9 -3.6 fumarate hydratase compare
ABZR87_RS17235 -1.9 -3.6 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS11245 -1.9 -5.1 translational GTPase TypA compare
ABZR87_RS02680 -1.9 -7.4 c-type cytochrome compare
ABZR87_RS07705 -1.9 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10195 -1.8 -3.2 signal peptidase I compare
ABZR87_RS12795 -1.8 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS19485 -1.8 -2.5 H-NS histone family protein compare
ABZR87_RS08660 -1.8 -4.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS00745 -1.8 -2.1 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS10610 -1.8 -1.2 inositol monophosphatase family protein compare
ABZR87_RS03075 -1.8 -8.5 AGE family epimerase/isomerase compare
ABZR87_RS11815 -1.8 -6.8 [protein-PII] uridylyltransferase compare
ABZR87_RS01280 -1.8 -5.0 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS15705 -1.8 -4.1 UvrD-helicase domain-containing protein compare
ABZR87_RS01675 -1.7 -2.3 carbohydrate kinase family protein compare
ABZR87_RS10085 -1.7 -1.7 Rne/Rng family ribonuclease compare
ABZR87_RS03420 -1.7 -1.3 type II secretion system minor pseudopilin GspI compare
ABZR87_RS16660 -1.7 -6.1 helix-turn-helix domain-containing protein compare
ABZR87_RS09500 -1.7 -3.8 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS10565 -1.6 -1.9 cupin domain-containing protein compare
ABZR87_RS14950 -1.6 -1.9 acetolactate synthase small subunit compare
ABZR87_RS01885 -1.6 -3.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS01270 -1.6 -6.2 ATP-dependent DNA helicase RecG compare
ABZR87_RS10780 -1.6 -2.8 PD-(D/E)XK nuclease family protein compare
ABZR87_RS03780 -1.6 -1.4 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS00360 -1.6 -1.8 acyl-CoA desaturase compare
ABZR87_RS12145 -1.6 -2.9 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS05145 -1.5 -1.9 copper chaperone PCu(A)C compare
ABZR87_RS03850 -1.5 -6.3 ureidoglycolate lyase compare
ABZR87_RS05170 -1.5 -1.5 acetylglutamate kinase compare
ABZR87_RS11125 -1.5 -5.5 cell division protein ZapE compare
ABZR87_RS11145 -1.5 -9.1 cytochrome-c oxidase, cbb3-type subunit I compare
ABZR87_RS17980 -1.5 -7.6 CheR family methyltransferase compare
ABZR87_RS06840 -1.5 -4.7 COX15/CtaA family protein compare
ABZR87_RS17240 -1.5 -6.7 alkyl hydroperoxide reductase subunit F compare
ABZR87_RS20785 -1.5 -1.5 DUF2783 domain-containing protein compare
ABZR87_RS20555 -1.5 -3.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS20680 -1.4 -3.7 SDR family oxidoreductase compare
ABZR87_RS09955 -1.4 -3.5 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS05060 -1.4 -3.0 DUF484 family protein compare
ABZR87_RS09505 -1.4 -5.0 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS07620 -1.4 -3.3 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS07470 -1.4 -5.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10395 -1.4 -4.6 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS02630 -1.4 -4.6 iron donor protein CyaY compare
ABZR87_RS01450 -1.4 -3.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS17730 -1.3 -7.0 GntR family transcriptional regulator compare
ABZR87_RS22910 -1.3 -2.1 6-phosphogluconolactonase compare
ABZR87_RS20535 -1.3 -6.6 elongation factor G compare
ABZR87_RS00285 -1.3 -0.9 acetylornithine transaminase compare
ABZR87_RS12970 -1.3 -3.0 putative holin compare
ABZR87_RS20690 -1.3 -1.4 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS09710 -1.3 -2.8 tRNA-Arg compare
ABZR87_RS15440 -1.3 -1.3 ribonuclease G compare
ABZR87_RS04880 -1.3 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS09940 -1.3 -8.2 excinuclease ABC subunit UvrB compare
ABZR87_RS03565 -1.3 -7.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06725 -1.3 -10.3 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS12800 -1.3 -1.4 trigger factor compare


Specific Phenotypes

For 3 genes in this experiment