Experiment set3IT031 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Levan - from Erwinia herbicola carbon source

200 most important genes:

  gene name fitness t score description  
BT3918 -5.4 -3.7 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT1377 -5.0 -3.4 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3395 -4.6 -8.9 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT1607 -4.5 -3.1 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT2074 -4.4 -7.4 ketol-acid reductoisomerase (NCBI ptt file) compare
BT2402 -4.4 -14.4 phosphoglycerate mutase (NCBI ptt file) compare
BT3933 -4.3 -7.2 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1857 -4.3 -5.9 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT2076 -4.2 -8.5 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0528 -4.2 -2.9 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT3718 -4.1 -7.4 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT3733 -4.1 -11.8 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3757 -4.1 -7.3 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT1843 -4.0 -8.2 adenylosuccinate synthetase (NCBI ptt file) compare
BT3936 -4.0 -2.8 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1746 -4.0 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT3761 -4.0 -4.7 N-succinylglutamate synthase (from data) compare
BT2401 -3.9 -9.1 threonine synthase (NCBI ptt file) compare
BT0202 -3.8 -2.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT2403 -3.7 -9.7 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT1374 -3.7 -5.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3549 -3.7 -3.6 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3758 -3.7 -3.6 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT2078 -3.6 -12.4 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT1861 -3.6 -5.9 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT0738 -3.5 -2.4 serine hydroxymethyltransferase (NCBI ptt file) compare
BT2077 -3.5 -6.3 acetolactate synthase large subunit (NCBI ptt file) compare
BT3253 -3.4 -3.3 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT0530 -3.4 -4.0 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT1859 -3.3 -4.0 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3759 -3.3 -9.8 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1380 -3.3 -2.3 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT0532 -3.3 -5.1 anthranilate synthase component I (NCBI ptt file) compare
BT1152 -3.3 -2.3 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT3760 -3.3 -5.9 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT3193 -3.2 -13.8 putative coenzyme A transferase (NCBI ptt file) compare
BT1153 -3.2 -6.1 phosphoserine aminotransferase (NCBI ptt file) compare
BT0531 -3.2 -3.1 anthranilate synthase component II (NCBI ptt file) compare
BT3164 -3.1 -8.6 quinolinate synthetase A (NCBI ptt file) compare
BT1758 -3.1 -2.2 fructose transporter (from data) compare
BT3184 -3.1 -13.1 L-aspartate oxidase (NCBI ptt file) compare
BT1375 -3.1 -9.7 aspartokinase (NCBI ptt file) compare
BT1270 -3.1 -4.2 putative Na+/H+ antiporter (NCBI ptt file) compare
BT2415 -3.1 -12.5 aspartate aminotransferase (NCBI ptt file) compare
BT3361 -3.0 -8.1 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT0201 -3.0 -3.0 histidinol dehydrogenase (NCBI ptt file) compare
BT1860 -3.0 -3.6 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT0527 -3.0 -4.5 tryptophan synthase alpha chain (NCBI ptt file) compare
BT4211 -3.0 -2.1 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT0529 -3.0 -2.1 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT3717 -3.0 -6.0 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1858 -3.0 -7.9 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT2837 -3.0 -13.2 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT2836 -2.9 -17.1 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT1379 -2.9 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT0891 -2.9 -2.0 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT3719 -2.9 -4.8 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT2129 -2.9 -6.4 aspartate--ammonia ligase (NCBI ptt file) compare
BT1381 -2.9 -4.8 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT2080 -2.8 -4.3 L-cysteine desulfidase cdsB (from data) compare
BT3320 -2.7 -7.9 dihydrodipicolinate reductase (NCBI ptt file) compare
BT0215 -2.7 -2.6 iron uptake regulatory protein (NCBI ptt file) compare
BT1378 -2.7 -4.1 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0203 -2.7 -2.6 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0533 -2.7 -2.6 tryptophan synthase beta chain (NCBI ptt file) compare
BT1747 -2.7 -4.7 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT1576 -2.6 -2.5 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT1733 -2.6 -3.5 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT4339 -2.5 -2.5 glutamine synthetase (NCBI ptt file) compare
BT0200 -2.5 -3.4 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT0892 -2.5 -2.2 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3197 -2.5 -2.3 hypothetical protein (NCBI ptt file) compare
BT0545 -2.4 -2.2 nitrogen regulatory protein P-II (NCBI ptt file) compare
BT1757 -2.3 -6.1 fructokinase (NCBI ptt file) compare
BT4098 -2.3 -1.5 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT3762 -2.3 -5.2 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT3981 -2.2 -4.4 hypothetical protein (NCBI ptt file) compare
BT1976 -2.2 -2.1 hypothetical protein (NCBI ptt file) compare
BT3394 -2.2 -8.8 putative arginine decarboxylase (NCBI ptt file) compare
BT1476 -2.1 -3.8 aspartate aminotransferase (NCBI ptt file) compare
BT1970 -2.1 -9.0 glutamate dehydrogenase (NCBI ptt file) compare
BT2059 -2.1 -2.0 TonB (NCBI ptt file) compare
BT4612 -2.0 -7.1 conserved hypothetical protein (NCBI ptt file) compare
BT0700 -1.9 -5.2 GTP pyrophosphokinase (NCBI ptt file) compare
BT4551 -1.9 -2.6 putative GTPase, ThdF family (NCBI ptt file) compare
BT0376 -1.9 -1.7 putative transcriptional regulator (NCBI ptt file) compare
BT3845 -1.9 -1.8 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT0876 -1.9 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT2932 -1.8 -2.1 transcriptional regulator (NCBI ptt file) compare
BT0322 -1.8 -2.9 putative oxidoreductase (NCBI ptt file) compare
BT2153 -1.8 -2.1 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT1752 -1.8 -1.2 hypothetical protein (NCBI ptt file) compare
BT3770 -1.7 -1.2 transcriptional regulator (NCBI ptt file) compare
BT1759 -1.7 -3.0 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) compare
BT0501 -1.7 -2.3 hypothetical protein (NCBI ptt file) compare
BT0869 -1.6 -1.8 hypothetical protein (NCBI ptt file) compare
BT2299 -1.6 -2.1 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1195 -1.6 -2.5 monofunctional biosynthetic peptidoglycan transglycosylase (NCBI ptt file) compare
BT0611 -1.6 -2.3 glycosyltransferase (NCBI ptt file) compare
BT1944 -1.6 -2.1 putative transposase (NCBI ptt file) compare
BT3866 -1.6 -9.3 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT0178 -1.5 -2.3 hypothetical protein (NCBI ptt file) compare
BT0674 -1.5 -2.4 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT4102 -1.5 -2.0 putative Sec-independent protein translocase (NCBI ptt file) compare
BT0736 -1.5 -2.6 putative transport protein (NCBI ptt file) compare
BT2122 -1.5 -1.4 lysyl-tRNA synthetase (NCBI ptt file) compare
BT4774 -1.5 -2.2 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4646 -1.5 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT3554 -1.4 -3.1 conserved hypothetical protein (NCBI ptt file) compare
BT3935 -1.4 -4.2 aminotransferase (NCBI ptt file) compare
BT4206 -1.4 -1.6 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file) compare
BT3260 -1.4 -2.3 DNA polymerase I (NCBI ptt file) compare
BT2541 -1.3 -7.3 putative calcium-transporting ATPase (NCBI ptt file) compare
BT1222 -1.3 -1.6 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT1994 -1.3 -2.3 hypothetical protein (NCBI ptt file) compare
BT3268 -1.3 -1.7 glucose-inhibited division protein A (NCBI ptt file) compare
BT0877 -1.2 -1.3 ferredoxin domain containing protein (NCBI ptt file) compare
BT0185 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1762 -1.2 -4.8 Fructo-oligosaccharide transporter (SusD component) (from data) compare
BT1534 -1.2 -2.0 hypothetical protein (NCBI ptt file) compare
BT2490 -1.2 -1.8 hypothetical protein (NCBI ptt file) compare
BT0544 -1.2 -2.9 ammonium transporter (NCBI ptt file) compare
BT2034 -1.2 -2.7 two-component system response regulator (NCBI ptt file) compare
BT1680 -1.2 -2.2 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT0740 -1.2 -1.3 flavoredoxin (NCBI ptt file) compare
BT0491 -1.2 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT1295 -1.2 -1.5 V-type sodium ATP synthase subunit K (NCBI ptt file) compare
BT0519 -1.2 -2.2 hypothetical protein (NCBI ptt file) compare
BT0004 -1.2 -1.5 hypothetical protein (NCBI ptt file) compare
BT1055 -1.1 -1.7 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT1166 -1.1 -2.1 putative glycosyltransferase (NCBI ptt file) compare
BT0481 -1.1 -2.4 polysaccharide export outer membrane protein (NCBI ptt file) compare
BT4666 -1.1 -1.8 putative K+ uptake system protein (NCBI ptt file) compare
BT2302 -1.1 -0.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1868 -1.1 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT3232 -1.1 -1.5 gluconate 5-dehydrogenase (NCBI ptt file) compare
BT0119 -1.1 -1.7 hypothetical protein (NCBI ptt file) compare
BT2445 -1.1 -2.8 hypothetical protein (NCBI ptt file) compare
BT3168 -1.1 -4.4 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT1213 -1.1 -2.2 periplasmic component of efflux system (NCBI ptt file) compare
BT0298 -1.1 -2.1 cation efflux system protein (outer membrane protein) (NCBI ptt file) compare
BT1844 -1.1 -1.9 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT3342 -1.1 -2.5 hypothetical protein (NCBI ptt file) compare
BT0777 -1.1 -1.6 hypothetical protein (NCBI ptt file) compare
BT3182 -1.1 -4.6 rubrerythrin (NCBI ptt file) compare
BT0776 -1.1 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2280 -1.1 -1.9 hypothetical protein (NCBI ptt file) compare
BT1972 -1.1 -6.9 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT4097 -1.1 -1.0 Trk system K+ uptake protein trkH (NCBI ptt file) compare
BT2843 -1.1 -1.7 integrase (NCBI ptt file) compare
BT4747 -1.1 -2.4 hypothetical protein (NCBI ptt file) compare
BT1217 -1.0 -2.6 two-component system response regulator (NCBI ptt file) compare
BT1146 -1.0 -1.6 putative metallo-beta-lactamase (NCBI ptt file) compare
BT1444 -1.0 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT4452 -1.0 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1305 -1.0 -3.9 hypothetical protein (NCBI ptt file) compare
BT1754 -1.0 -5.3 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) compare
BT4003 -1.0 -1.8 stationary-phase survival protein SurE (NCBI ptt file) compare
BT1885 -1.0 -3.7 putative ATP-dependent RNA helicase (NCBI ptt file) compare
BT2075 -1.0 -2.1 acyl-ACP thioesterase (NCBI ptt file) compare
BT2042 -1.0 -1.2 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT4733 -1.0 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT4258 -1.0 -3.3 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT0327 -1.0 -1.5 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT0926 -1.0 -3.2 ABC-type transport, permease protein (NCBI ptt file) compare
BT0699 -1.0 -1.7 putative sugar transporter (NCBI ptt file) compare
BT1201 -1.0 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT4593 -1.0 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT3690 -1.0 -2.0 putative membrane protein (NCBI ptt file) compare
BT1292 -1.0 -3.8 thiol:disulfide interchange protein (NCBI ptt file) compare
BT2142 -1.0 -1.1 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT1044 -1.0 -2.7 hypothetical protein (NCBI ptt file) compare
BT3035 -1.0 -5.2 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT0414 -1.0 -1.4 sulfate adenylyltransferase subunit 2 (NCBI ptt file) compare
BT1763 -0.9 -4.6 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT0071 -0.9 -2.1 hypothetical protein (NCBI ptt file) compare
BT1933 -0.9 -1.9 transposase (NCBI ptt file) compare
BT1220 -0.9 -1.6 6-phosphogluconolactonase (NCBI ptt file) compare
BT1154 -0.9 -1.2 ATP-independent RNA helicase (NCBI ptt file) compare
BT2741 -0.9 -1.6 sigma-54 modulation protein (NCBI ptt file) compare
BT3883 -0.9 -1.4 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (NCBI ptt file) compare
BT0584 -0.9 -1.9 putative outer membrane protein (NCBI ptt file) compare
BT1221 -0.9 -2.3 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT1376 -0.9 -1.7 putative ATP-binding protein involved in cell division (NCBI ptt file) compare
BT4198 -0.9 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1644 -0.9 -2.2 putative CPS biosynthesis glycosyltransferase (NCBI ptt file) compare
BT0130 -0.9 -1.6 putative oxidoreductase (NCBI ptt file) compare
BT2787 -0.9 -6.6 GTP-binding elongation factor family protein TypA/BipA (NCBI ptt file) compare
BT3911 -0.9 -1.8 malate dehydrogenase (NCBI ptt file) compare
BT4380 -0.9 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4616 -0.9 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT1572 -0.9 -3.2 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2043 -0.9 -2.1 hypothetical protein (NCBI ptt file) compare
BT0392 -0.9 -2.0 lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file) compare
BT1718 -0.9 -3.2 putative 2-aminoethylphosphonate pyruvate aminotransferase (NCBI ptt file) compare
BT1853 -0.9 -0.6 putative sulfatase (NCBI ptt file) compare
BT1493 -0.9 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT1338 -0.9 -2.4 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT0583 -0.9 -2.4 hypothetical protein (NCBI ptt file) compare
BT0118 -0.9 -2.8 putative cytochrome c biogenesis protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in carbon source experiments

For carbon source Levan - from Erwinia herbicola across organisms