Experiment set3IT030 for Herbaspirillum seropedicae SmR1

Compare to:

L-Glutamic acid nitrogen source; low aeration

200 most important genes:

  gene name fitness t score description  
HSERO_RS18990 -4.0 -6.5 pyrroline-5-carboxylate reductase compare
HSERO_RS16505 -3.7 -9.1 3-isopropylmalate dehydratase small subunit compare
HSERO_RS18430 -3.6 -5.5 chorismate mutase compare
HSERO_RS20345 -3.5 -6.3 histidinol dehydrogenase compare
HSERO_RS20315 -3.4 -5.6 imidazole glycerol phosphate synthase compare
HSERO_RS17815 -3.4 -3.2 glycosyl transferase compare
HSERO_RS20330 -3.3 -7.2 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS02330 -3.3 -8.4 aspartate carbamoyltransferase compare
HSERO_RS19445 -3.3 -10.1 anthranilate phosphoribosyltransferase compare
HSERO_RS08650 -3.3 -13.9 acetolactate synthase compare
HSERO_RS01935 -3.2 -9.4 3-dehydroquinate dehydratase compare
HSERO_RS15565 -3.2 -6.5 sulfate adenylyltransferase subunit 2 compare
HSERO_RS16500 -3.2 -8.4 3-isopropylmalate dehydrogenase compare
HSERO_RS20350 -3.1 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS15555 -3.1 -7.5 oxidoreductase compare
HSERO_RS15575 -3.1 -2.1 uroporphyrin-III C-methyltransferase compare
HSERO_RS19450 -3.0 -6.6 indole-3-glycerol-phosphate synthase compare
HSERO_RS02650 -3.0 -10.2 dihydroxy-acid dehydratase compare
HSERO_RS20310 -3.0 -3.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS15560 -2.9 -5.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS01815 -2.9 -9.2 gamma-glutamyl kinase compare
HSERO_RS16480 -2.9 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS20920 -2.9 -7.7 3-dehydroquinate synthase compare
HSERO_RS17185 -2.8 -12.7 2-isopropylmalate synthase compare
HSERO_RS00455 -2.8 -10.0 homoserine O-acetyltransferase compare
HSERO_RS00795 -2.8 -4.9 glycerol-3-phosphate dehydrogenase compare
HSERO_RS20320 -2.8 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS08660 -2.7 -8.0 ketol-acid reductoisomerase compare
HSERO_RS19510 -2.7 -8.6 threonine dehydratase compare
HSERO_RS20985 -2.7 -2.1 serine acetyltransferase compare
HSERO_RS15550 -2.6 -6.0 sulfite reductase compare
HSERO_RS04325 -2.5 -7.6 helicase I compare
HSERO_RS16515 -2.5 -8.0 isopropylmalate isomerase compare
HSERO_RS18425 -2.5 -2.4 prephenate dehydrogenase compare
HSERO_RS07970 -2.4 -3.0 formyltetrahydrofolate deformylase compare
HSERO_RS07160 -2.4 -6.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS16885 -2.4 -0.9 magnesium-transporting ATPase compare
HSERO_RS10460 -2.3 -1.8 homoserine dehydrogenase compare
HSERO_RS16470 -2.3 -5.0 tryptophan synthase subunit alpha compare
HSERO_RS02340 -2.2 -12.8 dihydroorotase compare
HSERO_RS00800 -2.2 -9.7 hypothetical protein compare
HSERO_RS19435 -2.2 -6.5 anthranilate synthase subunit I compare
HSERO_RS16475 -2.2 -3.3 tryptophan synthase subunit alpha compare
HSERO_RS16440 -2.1 -3.4 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS15570 -2.0 -8.3 sulfate adenylyltransferase compare
HSERO_RS09775 -2.0 -3.1 cobalamin synthase compare
HSERO_RS19090 -1.9 -2.2 C4-dicarboxylate ABC transporter compare
HSERO_RS19630 -1.8 -0.7 AMP nucleosidase compare
HSERO_RS04330 -1.8 -6.4 ATP-dependent exonuclease compare
HSERO_RS15585 -1.8 -9.3 cobalamin biosynthesis protein CbiX compare
HSERO_RS20325 -1.8 -3.9 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS02325 -1.8 -5.6 uracil phosphoribosyltransferase compare
HSERO_RS19240 -1.7 -4.2 arginine ABC transporter ATP-binding protein compare
HSERO_RS22350 -1.7 -2.0 urea carboxylase compare
HSERO_RS17810 -1.6 -0.6 glycosyl transferase compare
HSERO_RS05515 -1.6 -0.9 glucose-6-phosphate isomerase compare
HSERO_RS20355 -1.5 -4.0 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS05745 -1.5 -8.3 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS01990 -1.5 -6.0 shikimate 5-dehydrogenase compare
HSERO_RS11070 -1.4 -4.4 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS10865 -1.4 -7.2 PII uridylyl-transferase compare
HSERO_RS15680 -1.4 -8.4 chemotaxis protein CheY compare
HSERO_RS09050 -1.3 -4.1 2-aminoadipate aminotransferase compare
HSERO_RS15835 -1.3 -1.4 aspartate aminotransferase compare
HSERO_RS08405 -1.3 -0.6 membrane protein compare
HSERO_RS19245 -1.3 -4.6 glutamate/aspartate transporter permease GltK compare
HSERO_RS15685 -1.2 -5.8 histidine kinase compare
HSERO_RS13230 -1.2 -1.9 cobyric acid synthase compare
HSERO_RS13320 -1.1 -2.6 membrane protein compare
HSERO_RS19250 -1.1 -3.0 glutamate ABC transporter permease compare
HSERO_RS21945 -1.1 -3.8 hypothetical protein compare
HSERO_RS08640 -1.1 -2.0 hypothetical protein compare
HSERO_RS13295 -1.1 -4.2 membrane protein compare
HSERO_RS20135 -1.0 -2.4 type VI secretion protein compare
HSERO_RS13270 -1.0 -3.4 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS13255 -1.0 -2.9 cobyrinic acid a,c-diamide synthase compare
HSERO_RS21340 -1.0 -2.2 septum formation inhibitor protein compare
HSERO_RS02760 -1.0 -1.4 hypothetical protein compare
HSERO_RS11065 -1.0 -2.1 quinolinate synthetase compare
HSERO_RS00220 -1.0 -1.0 hypothetical protein compare
HSERO_RS09455 -1.0 -2.1 NAD synthetase compare
HSERO_RS02160 -1.0 -2.0 DNA-dependent helicase compare
HSERO_RS03450 -0.9 -1.5 energy transducer protein TonB compare
HSERO_RS20625 -0.9 -1.8 phenylacetate-CoA oxygenase compare
HSERO_RS10960 -0.9 -1.8 PEP synthetase regulatory protein compare
HSERO_RS19255 -0.9 -3.7 ABC transporter compare
HSERO_RS17980 -0.9 -1.0 GTP-binding protein compare
HSERO_RS15070 -0.9 -1.1 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS13315 -0.9 -1.0 ferredoxin compare
HSERO_RS13260 -0.9 -3.4 cobinamide adenolsyltransferase compare
HSERO_RS13305 -0.9 -3.4 magnesium chelatase compare
HSERO_RS04170 -0.9 -1.6 hypothetical protein compare
HSERO_RS13310 -0.9 -4.9 cobaltochelatase compare
HSERO_RS00965 -0.9 -0.6 trehalose-phosphatase compare
HSERO_RS10805 -0.9 -1.0 succinyldiaminopimelate aminotransferase compare
HSERO_RS21740 -0.9 -4.7 methionine synthase compare
HSERO_RS02260 -0.8 -2.3 DNA polymerase I compare
HSERO_RS08015 -0.8 -2.5 MerR family transcriptional regulator compare
HSERO_RS08655 -0.8 -1.0 acetolactate synthase compare
HSERO_RS18860 -0.8 -2.0 potassium-transporting ATPase subunit C compare
HSERO_RS05265 -0.8 -1.8 L-fucono-1,5-lactonase (from data) compare
HSERO_RS00430 -0.8 -2.5 glutamate--cysteine ligase compare
HSERO_RS09145 -0.8 -2.4 DNA topoisomerase IV subunit A compare
HSERO_RS07445 -0.8 -1.7 FMN reductase compare
HSERO_RS20240 -0.8 -0.9 cytochrome B compare
HSERO_RS13275 -0.8 -1.8 cobalamin biosynthesis protein CbiG compare
HSERO_RS02560 -0.8 -1.7 hypothetical protein compare
HSERO_RS10085 -0.8 -2.0 transcriptional regulator compare
HSERO_RS03435 -0.8 -1.3 bacterioferritin compare
HSERO_RS02765 -0.8 -1.2 general stress protein compare
HSERO_RS12220 -0.8 -1.3 dehydrogenase compare
HSERO_RS16370 -0.8 -1.1 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS00810 -0.8 -1.3 glutaredoxin compare
HSERO_RS13675 -0.7 -2.0 histidine kinase compare
HSERO_RS21935 -0.7 -1.3 cytochrome C compare
HSERO_RS12635 -0.7 -3.2 histidine kinase compare
HSERO_RS13265 -0.7 -2.6 G3E family GTPase compare
HSERO_RS02090 -0.7 -1.2 Holliday junction DNA helicase RuvA compare
HSERO_RS10455 -0.7 -4.8 aminotransferase compare
HSERO_RS13285 -0.7 -0.4 precorrin-2 C20-methyltransferase compare
HSERO_RS03575 -0.7 -1.6 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS04340 -0.7 -2.9 gamma-glutamyl ligase compare
HSERO_RS18875 -0.7 -1.1 ATPase compare
HSERO_RS21475 -0.7 -1.5 recombinase XerC compare
HSERO_RS11695 -0.7 -2.4 rhodanese compare
HSERO_RS05620 -0.7 -1.0 dehydratase compare
HSERO_RS09770 -0.7 -2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS21540 -0.7 -1.7 alkyl hydroperoxide reductase subunit C compare
HSERO_RS00410 -0.7 -1.5 phosphoheptose isomerase compare
HSERO_RS11885 -0.6 -1.4 hypothetical protein compare
HSERO_RS12360 -0.6 -1.5 hypothetical protein compare
HSERO_RS02155 -0.6 -1.5 chorismate mutase compare
HSERO_RS06595 -0.6 -3.7 hypothetical protein compare
HSERO_RS21375 -0.6 -1.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS05245 -0.6 -2.2 hypothetical protein compare
HSERO_RS10280 -0.6 -1.2 flagellar basal body protein FliL compare
HSERO_RS10815 -0.6 -3.1 chromosome segregation protein SMC compare
HSERO_RS03085 -0.6 -1.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS22075 -0.6 -1.0 phosphohexose mutase compare
HSERO_RS03875 -0.6 -0.9 hypothetical protein compare
HSERO_RS08115 -0.6 -0.9 acyl-CoA-binding protein compare
HSERO_RS04335 -0.6 -1.2 sodium:proton antiporter compare
HSERO_RS10070 -0.6 -0.9 hypothetical protein compare
HSERO_RS02875 -0.6 -1.5 transcriptional regulator compare
HSERO_RS14840 -0.6 -2.6 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS09435 -0.6 -1.0 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS22155 -0.6 -2.0 hypothetical protein compare
HSERO_RS23195 -0.6 -2.1 LuxR family transcriptional regulator compare
HSERO_RS16450 -0.6 -1.4 colicin V production protein compare
HSERO_RS02065 -0.6 -1.9 hypothetical protein compare
HSERO_RS06760 -0.6 -2.2 hypothetical protein compare
HSERO_RS03060 -0.6 -1.7 DNA repair protein compare
HSERO_RS13880 -0.6 -1.0 hypothetical protein compare
HSERO_RS14025 -0.6 -1.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS07910 -0.6 -1.5 alkylhydroperoxidase compare
HSERO_RS04270 -0.6 -2.3 membrane protein compare
HSERO_RS06395 -0.6 -1.9 DSBA oxidoreductase compare
HSERO_RS19835 -0.6 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS03910 -0.6 -2.0 hypothetical protein compare
HSERO_RS21035 -0.6 -1.0 hypothetical protein compare
HSERO_RS15040 -0.6 -2.9 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS21500 -0.5 -3.1 hypothetical protein compare
HSERO_RS12300 -0.5 -1.5 hypothetical protein compare
HSERO_RS23950 -0.5 -1.4 amino acid transporter LysE compare
HSERO_RS17110 -0.5 -1.3 ribonuclease H compare
HSERO_RS22935 -0.5 -1.7 metallothio multi-domain protein compare
HSERO_RS22065 -0.5 -1.7 EpiA compare
HSERO_RS18455 -0.5 -1.2 phosphoglycolate phosphatase compare
HSERO_RS09335 -0.5 -1.0 DNA-3-methyladenine glycosylase compare
HSERO_RS13660 -0.5 -1.2 membrane protein compare
HSERO_RS03595 -0.5 -1.1 cation transporter compare
HSERO_RS14540 -0.5 -2.3 nitrite reductase compare
HSERO_RS10405 -0.5 -0.9 phosphate starvation protein PhoH compare
HSERO_RS08745 -0.5 -1.6 membrane protein compare
HSERO_RS09870 -0.5 -3.3 chemotaxis protein CheY compare
HSERO_RS03905 -0.5 -1.5 RNA polymerase subunit sigma-24 compare
HSERO_RS10395 -0.5 -0.9 phosphate transport regulator compare
HSERO_RS15545 -0.5 -2.3 membrane protein compare
HSERO_RS10785 -0.5 -2.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS16535 -0.5 -2.4 hypothetical protein compare
HSERO_RS01105 -0.5 -1.2 hypothetical protein compare
HSERO_RS16595 -0.5 -1.5 hypothetical protein compare
HSERO_RS13280 -0.5 -1.1 precorrin-4 C11-methyltransferase compare
HSERO_RS19350 -0.5 -1.7 amino acid ABC transporter compare
HSERO_RS01510 -0.5 -2.3 membrane protein compare
HSERO_RS19205 -0.5 -2.3 hypothetical protein compare
HSERO_RS13240 -0.5 -1.8 cobalamin biosynthesis protein CobD compare
HSERO_RS16200 -0.5 -1.3 hypothetical protein compare
HSERO_RS12855 -0.5 -1.2 histidine kinase compare
HSERO_RS19155 -0.5 -0.9 LysR family transcriptional regulator compare
HSERO_RS03545 -0.5 -1.3 hypothetical protein compare
HSERO_RS01835 -0.5 -0.9 hypothetical protein compare
HSERO_RS02350 -0.5 -2.2 diadenosine tetraphosphatase compare
HSERO_RS08990 -0.5 -1.7 heat shock protein 90 compare
HSERO_RS09090 -0.5 -1.7 hypothetical protein compare
HSERO_RS04290 -0.5 -2.2 DNA-binding protein compare
HSERO_RS07385 -0.5 -0.7 hypothetical protein compare
HSERO_RS16380 -0.5 -1.6 hypothetical protein compare
HSERO_RS18365 -0.5 -1.8 hypothetical protein compare
HSERO_RS05980 -0.5 -0.7 aldehyde dehydrogenase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in nitrogen source experiments

For nitrogen source L-Glutamic acid across organisms