Experiment set3IT030 for Ralstonia sp. UNC404CL21Col

Compare to:

no_plant_rhizosphere sample 3; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -6.2 -4.3 NUDIX domain-containing protein compare
ABZR87_RS02595 -5.9 -7.0 shikimate kinase compare
ABZR87_RS02160 -5.9 -4.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02655 -5.8 -8.0 anti-sigma factor compare
ABZR87_RS14505 -5.8 -4.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS14500 -5.8 -6.9 tryptophan synthase subunit beta compare
ABZR87_RS01255 -5.5 -16.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS08630 -5.4 -3.7 dihydroorotase compare
ABZR87_RS02640 -5.4 -12.5 diaminopimelate decarboxylase compare
ABZR87_RS05200 -5.4 -17.2 homoserine O-acetyltransferase compare
ABZR87_RS08695 -5.3 -15.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS14540 -5.3 -3.7 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14115 -5.3 -5.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS02565 -5.2 -3.6 glutamate synthase subunit beta compare
ABZR87_RS01810 -5.1 -3.5 glutamate 5-kinase compare
ABZR87_RS02570 -5.1 -18.6 glutamate synthase-related protein compare
ABZR87_RS06350 -4.9 -11.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS20875 -4.9 -5.8 LysR family transcriptional regulator compare
ABZR87_RS02155 -4.9 -8.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS20880 -4.8 -6.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02145 -4.7 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS09450 -4.6 -8.2 prephenate dehydratase compare
ABZR87_RS02590 -4.5 -7.6 3-dehydroquinate synthase compare
ABZR87_RS05100 -4.5 -3.1 RNA polymerase-binding protein DksA compare
ABZR87_RS07380 -4.5 -7.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS07360 -4.5 -8.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS05305 -4.5 -9.6 TetR family transcriptional regulator compare
ABZR87_RS02140 -4.4 -16.7 anthranilate synthase component I compare
ABZR87_RS13285 -4.3 -14.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS14530 -4.2 -2.9 3-isopropylmalate dehydrogenase compare
ABZR87_RS09465 -4.2 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS20440 -4.2 -1.6 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS02380 -4.1 -8.0 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS22970 -4.1 -10.4 cystathionine gamma-synthase family protein compare
ABZR87_RS13645 -4.1 -1.6 hypothetical protein compare
ABZR87_RS13250 -4.1 -3.2 phosphoserine phosphatase SerB compare
ABZR87_RS22920 -4.0 -4.8 phosphogluconate dehydratase compare
ABZR87_RS06845 -4.0 -10.0 heme o synthase compare
ABZR87_RS13790 -4.0 -8.1 chorismate synthase compare
ABZR87_RS14535 -3.9 -4.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14490 -3.9 -7.0 tryptophan synthase subunit alpha compare
ABZR87_RS10170 -3.9 -4.6 RseA family anti-sigma factor compare
ABZR87_RS16735 -3.8 -13.1 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS13475 -3.8 -2.6 PAS domain S-box protein compare
ABZR87_RS08990 -3.7 -5.6 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS03440 -3.7 -7.5 type II secretion system protein GspM compare
ABZR87_RS00185 -3.7 -4.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS03565 -3.6 -9.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02375 -3.5 -8.8 cytochrome c1 compare
ABZR87_RS10195 -3.5 -2.4 signal peptidase I compare
ABZR87_RS02550 -3.5 -3.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS09445 -3.5 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02385 -3.5 -4.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS03410 -3.5 -8.5 type II secretion system major pseudopilin GspG compare
ABZR87_RS12965 -3.4 -4.2 tail protein X compare
ABZR87_RS01225 -3.4 -3.8 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS06705 -3.4 -13.0 glutamate--cysteine ligase compare
ABZR87_RS21285 -3.4 -2.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS19010 -3.3 -3.2 acyloxyacyl hydrolase compare
ABZR87_RS17650 -3.3 -7.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14965 -3.2 -3.1 DUF3619 family protein compare
ABZR87_RS02440 -3.1 -6.6 twin-arginine translocase subunit TatC compare
ABZR87_RS07005 -3.1 -2.1 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS01240 -3.0 -10.0 catalase/peroxidase HPI compare
ABZR87_RS08970 -3.0 -6.9 protein TolQ compare
ABZR87_RS12960 -3.0 -1.6 head completion/stabilization protein compare
ABZR87_RS09515 -2.9 -2.0 cysteine synthase CysM compare
ABZR87_RS05645 -2.9 -4.0 SDR family oxidoreductase compare
ABZR87_RS02545 -2.9 -5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS08640 -2.9 -4.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS10085 -2.9 -2.0 Rne/Rng family ribonuclease compare
ABZR87_RS07050 -2.8 -1.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08985 -2.8 -10.2 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS12800 -2.8 -4.9 trigger factor compare
ABZR87_RS08980 -2.8 -4.2 cell envelope integrity protein TolA compare
ABZR87_RS16170 -2.8 -1.9 argininosuccinate lyase compare
ABZR87_RS10175 -2.7 -5.8 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02220 -2.7 -8.8 redox-regulated ATPase YchF compare
ABZR87_RS03430 -2.7 -9.4 type II secretion system minor pseudopilin GspK compare
ABZR87_RS14375 -2.7 -2.6 fumarate hydratase compare
ABZR87_RS12785 -2.7 -1.9 endopeptidase La compare
ABZR87_RS22910 -2.7 -2.6 6-phosphogluconolactonase compare
ABZR87_RS15805 -2.7 -7.5 IclR family transcriptional regulator compare
ABZR87_RS06840 -2.7 -7.7 COX15/CtaA family protein compare
ABZR87_RS04880 -2.7 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS01110 -2.6 -8.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00210 -2.6 -7.5 nitrite/sulfite reductase compare
ABZR87_RS00205 -2.6 -2.3 DUF934 domain-containing protein compare
ABZR87_RS04865 -2.6 -3.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS03435 -2.6 -4.3 type II secretion system protein GspL compare
ABZR87_RS07035 -2.6 -3.9 RNase adapter RapZ compare
ABZR87_RS05205 -2.5 -4.6 methionine biosynthesis protein MetW compare
ABZR87_RS11125 -2.5 -5.4 cell division protein ZapE compare
ABZR87_RS15505 -2.5 -1.3 DNA polymerase III subunit alpha compare
ABZR87_RS22690 -2.5 -3.3 XRE family transcriptional regulator compare
ABZR87_RS16660 -2.5 -4.4 helix-turn-helix domain-containing protein compare
ABZR87_RS17310 -2.5 -5.0 PadR family transcriptional regulator compare
ABZR87_RS03450 -2.5 -9.5 type II secretion system secretin GspD compare
ABZR87_RS02535 -2.5 -3.7 phospholipid-binding protein MlaC compare
ABZR87_RS02850 -2.5 -1.7 elongation factor Tu compare
ABZR87_RS10980 -2.4 -1.3 tRNA-Leu compare
ABZR87_RS00220 -2.4 -8.9 CysB family HTH-type transcriptional regulator compare
ABZR87_RS21950 -2.4 -6.1 hypothetical protein compare
ABZR87_RS16960 -2.4 -2.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS14360 -2.4 -8.6 acetate--CoA ligase compare
ABZR87_RS07665 -2.4 -7.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00340 -2.4 -2.2 50S ribosomal protein L33 compare
ABZR87_RS22300 -2.4 -1.3 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS16740 -2.4 -6.4 2-methylcitrate synthase compare
ABZR87_RS04940 -2.3 -3.6 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02630 -2.3 -5.1 iron donor protein CyaY compare
ABZR87_RS10900 -2.3 -5.9 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS13315 -2.3 -6.8 RluA family pseudouridine synthase compare
ABZR87_RS07510 -2.2 -3.2 LysR family transcriptional regulator compare
ABZR87_RS02540 -2.2 -4.5 VacJ family lipoprotein compare
ABZR87_RS11470 -2.2 -5.1 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS02445 -2.2 -4.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS03425 -2.2 -5.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS03075 -2.2 -8.1 AGE family epimerase/isomerase compare
ABZR87_RS02325 -2.2 -4.6 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS00435 -2.2 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS22520 -2.2 -2.8 ABATE domain-containing protein compare
ABZR87_RS11440 -2.1 -6.8 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS05065 -2.1 -2.5 tyrosine recombinase XerC compare
ABZR87_RS04500 -2.1 -2.2 hypothetical protein compare
ABZR87_RS04945 -2.1 -2.8 DUF4390 domain-containing protein compare
ABZR87_RS16055 -2.1 -5.3 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS13705 -2.0 -1.6 integration host factor subunit alpha compare
ABZR87_RS08700 -2.0 -5.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS14190 -2.0 -9.1 DUF2589 domain-containing protein compare
ABZR87_RS14420 -2.0 -7.1 heme-binding protein compare
ABZR87_RS10080 -2.0 -8.0 GTP 3',8-cyclase MoaA compare
ABZR87_RS08795 -2.0 -3.4 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS06495 -2.0 -1.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS00200 -2.0 -2.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS01615 -2.0 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS03460 -2.0 -5.8 type II secretion system inner membrane protein GspF compare
ABZR87_RS17730 -2.0 -4.5 GntR family transcriptional regulator compare
ABZR87_RS06710 -2.0 -10.7 glutathione synthase compare
ABZR87_RS06745 -1.9 -4.3 S41 family peptidase compare
ABZR87_RS11330 -1.9 -1.9 transcriptional repressor LexA compare
ABZR87_RS10190 -1.9 -5.6 translation elongation factor 4 compare
ABZR87_RS03850 -1.9 -4.4 ureidoglycolate lyase compare
ABZR87_RS03455 -1.9 -7.2 type II secretion system ATPase GspE compare
ABZR87_RS15705 -1.9 -2.3 UvrD-helicase domain-containing protein compare
ABZR87_RS05060 -1.9 -4.1 DUF484 family protein compare
ABZR87_RS06355 -1.9 -5.4 SPOR domain-containing protein compare
ABZR87_RS11790 -1.9 -1.8 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS17215 -1.9 -8.2 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS00875 -1.9 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS07055 -1.8 -7.4 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS01645 -1.8 -2.4 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01275 -1.8 -4.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS16165 -1.8 -1.0 anti-sigma factor compare
ABZR87_RS16125 -1.8 -6.0 heme biosynthesis protein HemY compare
ABZR87_RS00190 -1.8 -5.8 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS04265 -1.8 -8.3 phenylalanine 4-monooxygenase compare
ABZR87_RS02555 -1.8 -5.1 ABC transporter ATP-binding protein compare
ABZR87_RS21820 -1.8 -5.4 alpha/beta hydrolase compare
ABZR87_RS11460 -1.8 -4.1 gephyrin-like molybdotransferase Glp compare
ABZR87_RS09955 -1.8 -3.7 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS09935 -1.7 -1.2 amino acid aminotransferase compare
ABZR87_RS12780 -1.7 -1.1 HU family DNA-binding protein compare
ABZR87_RS01285 -1.7 -1.6 preprotein translocase subunit YajC compare
ABZR87_RS13415 -1.7 -2.9 IclR family transcriptional regulator compare
ABZR87_RS01245 -1.7 -1.2 Dps family protein compare
ABZR87_RS12795 -1.7 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS11015 -1.7 -3.3 amino-acid N-acetyltransferase compare
ABZR87_RS07675 -1.7 -6.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS00360 -1.7 -2.1 acyl-CoA desaturase compare
ABZR87_RS16730 -1.7 -3.5 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS01270 -1.7 -5.9 ATP-dependent DNA helicase RecG compare
ABZR87_RS10685 -1.7 -6.3 microcin C ABC transporter permease YejB compare
ABZR87_RS06235 -1.6 -5.1 MBL fold metallo-hydrolase compare
ABZR87_RS13805 -1.6 -3.5 CBS domain-containing protein compare
ABZR87_RS00325 -1.6 -2.4 peptidylprolyl isomerase compare
ABZR87_RS22585 -1.6 -1.4 methyl-accepting chemotaxis protein compare
ABZR87_RS13770 -1.6 -6.0 CoA transferase subunit A compare
ABZR87_RS09500 -1.6 -3.4 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS18325 -1.6 -1.2 ferredoxin family protein compare
ABZR87_RS11435 -1.6 -1.9 Mth938-like domain-containing protein compare
ABZR87_RS09625 -1.6 -7.0 CobD/CbiB family protein compare
ABZR87_RS20555 -1.6 -1.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS01280 -1.6 -4.4 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS02400 -1.6 -6.3 Do family serine endopeptidase compare
ABZR87_RS16185 -1.6 -1.8 dCTP deaminase compare
ABZR87_RS15715 -1.5 -5.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS09615 -1.5 -0.9 50S ribosomal protein L19 compare
ABZR87_RS11760 -1.5 -1.0 membrane protein compare
ABZR87_RS01980 -1.5 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS13400 -1.5 -1.1 hypothetical protein compare
ABZR87_RS01085 -1.5 -2.8 rhombosortase compare
ABZR87_RS08625 -1.5 -1.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS09975 -1.5 -3.7 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS09505 -1.5 -4.8 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS09650 -1.5 -4.8 molybdopterin adenylyltransferase compare
ABZR87_RS07620 -1.5 -1.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS19470 -1.4 -6.5 UDP-glucose 4-epimerase GalE compare
ABZR87_RS08805 -1.4 -6.2 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
ABZR87_RS20505 -1.4 -2.0 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment