Experiment set3IT030 for Ralstonia sp. UNC404CL21Col

Compare to:

no_plant_rhizosphere sample 3; outgrowth in LB

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS06385 +9.2 49.4 CHASE3 domain-containing protein compare
ABZR87_RS10875 +9.1 76.1 RNA polymerase sigma factor RpoS compare
ABZR87_RS19495 +6.5 52.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS20805 +6.2 38.8 DNA-binding transcriptional regulator KdgR compare
ABZR87_RS06400 +5.4 42.4 response regulator transcription factor compare
ABZR87_RS01055 +5.3 26.7 heat-inducible transcriptional repressor HrcA compare
ABZR87_RS17290 +4.8 41.0 EAL domain-containing protein compare
ABZR87_RS06045 +4.8 26.8 hypothetical protein compare
ABZR87_RS03015 +4.7 17.5 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR87_RS01375 +4.5 34.1 two-component system hybrid sensor histidine kinase/response regulator PhcR compare
ABZR87_RS01035 +4.4 17.3 histidine utilization repressor compare
ABZR87_RS13540 +4.3 14.9 DUF1488 family protein compare
ABZR87_RS01220 +4.0 27.9 type IV pilus twitching motility protein PilT compare
ABZR87_RS01215 +3.8 29.9 PilT/PilU family type 4a pilus ATPase compare
ABZR87_RS01750 +3.7 26.2 sigma-54 dependent transcriptional regulator compare
ABZR87_RS19565 +3.7 18.5 DUF3613 domain-containing protein compare
ABZR87_RS21075 +3.7 20.7 MerR family transcriptional regulator compare
ABZR87_RS15000 +3.6 30.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS19560 +3.5 18.5 lipoprotein compare
ABZR87_RS15245 +3.5 27.2 serine/threonine-protein kinase compare
ABZR87_RS08000 +3.5 28.7 pilin compare
ABZR87_RS19550 +3.4 22.5 type II secretion system F family protein compare
ABZR87_RS19555 +3.4 16.5 type II secretion system F family protein compare
ABZR87_RS19530 +3.2 19.4 Flp pilus assembly protein CpaB compare
ABZR87_RS05190 +3.2 19.3 4-aminobutyrate--2-oxoglutarate transaminase compare
ABZR87_RS09035 +3.0 11.4 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS19540 +3.0 20.3 CpaE family protein compare
ABZR87_RS03960 +3.0 23.6 cation:proton antiporter compare
ABZR87_RS19545 +3.0 15.6 CpaF family protein compare
ABZR87_RS19535 +2.9 18.5 type II and III secretion system protein family protein compare
ABZR87_RS01370 +2.9 12.4 ATP-binding protein compare
ABZR87_RS19570 +2.9 23.2 TadG family pilus assembly protein compare
ABZR87_RS19525 +2.9 21.1 TadE/TadG family type IV pilus assembly protein compare
ABZR87_RS03955 +2.9 21.4 YbdK family carboxylate-amine ligase compare
ABZR87_RS23535 +2.8 17.3 RNA polymerase factor sigma-54 compare
ABZR87_RS21700 +2.7 3.0 hypothetical protein compare
ABZR87_RS01755 +2.7 15.3 ATP-binding protein compare
ABZR87_RS14515 +2.6 17.7 FimV/HubP family polar landmark-like protein TapV compare
ABZR87_RS11195 +2.6 13.6 pseudouridine synthase compare
ABZR87_RS19520 +2.6 19.4 prepilin peptidase compare
ABZR87_RS23515 +2.4 12.9 sigma-54 dependent transcriptional regulator compare
ABZR87_RS06405 +2.4 2.0 hypothetical protein compare
ABZR87_RS16180 +2.3 1.5 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS23095 +2.3 4.9 MarR family transcriptional regulator compare
ABZR87_RS02610 +2.3 16.8 type 4a pilus biogenesis protein PilO compare
ABZR87_RS09960 +2.3 4.7 ABC transporter permease compare
ABZR87_RS19490 +2.2 17.8 bifunctional diguanylate cyclase/phosphodiesterase compare
ABZR87_RS01365 +2.1 9.8 class I SAM-dependent methyltransferase PhcB compare
ABZR87_RS23200 +2.0 11.1 FadR/GntR family transcriptional regulator compare
ABZR87_RS02615 +2.0 14.6 PilN domain-containing protein compare
ABZR87_RS02600 +2.0 15.9 temperature dependent type IV pilus secretin PilQ compare
ABZR87_RS08925 +2.0 13.7 type IV pilin protein compare
ABZR87_RS00445 +1.9 8.2 cold-shock protein compare
ABZR87_RS23315 +1.9 1.7 MarR family transcriptional regulator compare
ABZR87_RS14060 +1.9 9.8 exopolyphosphatase compare
ABZR87_RS15240 +1.9 3.6 YicC/YloC family endoribonuclease compare
ABZR87_RS08930 +1.9 17.5 pilus assembly protein compare
ABZR87_RS08940 +1.9 15.8 PilW family protein compare
ABZR87_RS06455 +1.8 7.9 IclR family transcriptional regulator compare
ABZR87_RS13210 +1.8 1.4 two-component system response regulator OmpR compare
ABZR87_RS10310 +1.8 7.6 FadR/GntR family transcriptional regulator compare
ABZR87_RS02605 +1.8 9.6 pilus assembly protein PilP compare
ABZR87_RS04980 +1.8 13.6 LysM peptidoglycan-binding domain-containing protein compare
ABZR87_RS01855 +1.8 12.4 A24 family peptidase compare
ABZR87_RS02620 +1.8 10.8 type IV pilus biogenesis protein PilM compare
ABZR87_RS08920 +1.8 14.6 GspH/FimT family pseudopilin compare
ABZR87_RS10905 +1.8 10.9 type IV pilus biogenesis/stability protein PilW compare
ABZR87_RS07060 +1.8 13.3 RNA polymerase factor sigma-54 compare
ABZR87_RS08935 +1.8 7.6 PilX N-terminal domain-containing pilus assembly protein compare
ABZR87_RS21555 +1.7 9.9 aspartate aminotransferase family protein compare
ABZR87_RS08945 +1.7 11.8 type IV pilus modification protein PilV compare
ABZR87_RS08740 +1.7 14.5 hypothetical protein compare
ABZR87_RS07425 +1.7 12.4 sodium:solute symporter family protein compare
ABZR87_RS02480 +1.7 1.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS07645 +1.7 4.1 Fis family transcriptional regulator compare
ABZR87_RS20230 +1.7 1.4 Hcp family type VI secretion system effector compare
ABZR87_RS05015 +1.6 2.5 penicillin-binding protein 2 compare
ABZR87_RS05010 +1.6 1.1 rod shape-determining protein RodA compare
ABZR87_RS09970 +1.6 5.5 sugar ABC transporter substrate-binding protein compare
ABZR87_RS01430 +1.6 11.6 LysR family transcriptional regulator compare
ABZR87_RS17910 +1.6 4.2 IclR family transcriptional regulator compare
ABZR87_RS08685 +1.6 13.9 hypothetical protein compare
ABZR87_RS17930 +1.6 5.7 flagellar transcriptional regulator FlhD compare
ABZR87_RS19675 +1.5 2.8 cold-shock protein compare
ABZR87_RS20725 +1.5 6.1 alpha/beta fold hydrolase compare
ABZR87_RS22980 +1.5 1.2 hypothetical protein compare
ABZR87_RS14330 +1.5 2.1 hypothetical protein compare
ABZR87_RS14955 +1.5 2.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS01850 +1.5 8.9 type II secretion system F family protein compare
ABZR87_RS05025 +1.4 0.9 rod shape-determining protein MreC compare
ABZR87_RS07850 +1.4 8.8 DEAD/DEAH box helicase compare
ABZR87_RS12465 +1.4 9.8 PilZ domain-containing protein compare
ABZR87_RS22830 +1.4 1.5 Crp/Fnr family transcriptional regulator compare
ABZR87_RS01845 +1.3 7.6 type IV-A pilus assembly ATPase PilB compare
ABZR87_RS21815 +1.3 2.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS02485 +1.3 2.2 MarC family protein compare
ABZR87_RS00935 +1.3 6.1 polynucleotide adenylyltransferase PcnB compare
ABZR87_RS10870 +1.3 3.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS00385 +1.3 2.4 response regulator transcription factor compare
ABZR87_RS20810 +1.3 3.6 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
ABZR87_RS05180 +1.3 4.1 nucleoid occlusion factor SlmA compare
ABZR87_RS20500 +1.2 2.0 hypothetical protein compare
ABZR87_RS08730 +1.2 11.7 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR87_RS07020 +1.2 8.6 dynamin-like GTPase family protein compare
ABZR87_RS20730 +1.2 1.0 hypothetical protein compare
ABZR87_RS17935 +1.2 7.0 flagellar transcriptional regulator FlhC compare
ABZR87_RS13130 +1.2 3.3 ogr/Delta-like zinc finger family protein compare
ABZR87_RS16665 +1.2 5.1 GNAT family N-acetyltransferase compare
ABZR87_RS05275 +1.2 4.8 winged helix-turn-helix domain-containing protein compare
ABZR87_RS02365 +1.2 5.0 ClpXP protease specificity-enhancing factor compare
ABZR87_RS14220 +1.2 9.5 PrkA family serine protein kinase compare
ABZR87_RS08145 +1.2 3.8 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase compare
ABZR87_RS22180 +1.1 4.2 response regulator transcription factor compare
ABZR87_RS08360 +1.1 3.5 NmrA family NAD(P)-binding protein compare
ABZR87_RS22430 +1.1 4.5 PadR family transcriptional regulator compare
ABZR87_RS08725 +1.1 9.6 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS15575 +1.1 5.1 hypothetical protein compare
ABZR87_RS04995 +1.1 3.1 DNA topoisomerase III compare
ABZR87_RS17865 +1.1 2.0 cation:proton antiporter compare
ABZR87_RS20815 +1.1 4.3 5-dehydro-4-deoxy-D-glucuronate isomerase compare
ABZR87_RS15585 +1.1 6.8 DUF2957 domain-containing protein compare
ABZR87_RS14210 +1.1 8.7 SpoVR family protein compare
ABZR87_RS19215 +1.1 6.9 EAL domain-containing protein compare
ABZR87_RS23180 +1.1 1.1 ABC transporter ATP-binding protein compare
ABZR87_RS15495 +1.0 7.7 O-antigen ligase family protein compare
ABZR87_RS18025 +1.0 6.5 flagellar biosynthesis protein FlhA compare
ABZR87_RS01685 +1.0 4.3 histone H1-like DNA-binding protein compare
ABZR87_RS18165 +1.0 1.8 hypothetical protein compare
ABZR87_RS21770 +1.0 1.4 family 2A encapsulin nanocompartment shell protein compare
ABZR87_RS05000 +1.0 7.8 LysR family transcriptional regulator compare
ABZR87_RS13700 +1.0 5.8 MerR family transcriptional regulator compare
ABZR87_RS16845 +1.0 1.2 hypothetical protein compare
ABZR87_RS01075 +1.0 5.4 MprA protease, GlyGly-CTERM protein-sorting domain-containing form compare
ABZR87_RS22265 +1.0 3.7 flagellar basal-body rod protein FlgG compare
ABZR87_RS22220 +1.0 5.8 flagellar biosynthetic protein FliR compare
ABZR87_RS22260 +1.0 2.1 flagellar basal body L-ring protein FlgH compare
ABZR87_RS07830 +1.0 5.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS09965 +1.0 2.4 sugar ABC transporter ATP-binding protein compare
ABZR87_RS08205 +0.9 1.7 hypothetical protein compare
ABZR87_RS10295 +0.9 2.8 hypothetical protein compare
ABZR87_RS09715 +0.9 4.1 hypothetical protein compare
ABZR87_RS21150 +0.9 2.0 branched-chain amino acid ABC transporter permease compare
ABZR87_RS12180 +0.9 3.6 hypothetical protein compare
ABZR87_RS15480 +0.9 6.5 glycosyltransferase family 25 protein compare
ABZR87_RS12130 +0.9 1.3 LysR substrate-binding domain-containing protein compare
ABZR87_RS21245 +0.9 1.3 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS14780 +0.9 2.7 MaoC family dehydratase compare
ABZR87_RS12015 +0.9 4.5 zinc-binding alcohol dehydrogenase family protein compare
ABZR87_RS03180 +0.9 1.9 hypothetical protein compare
ABZR87_RS14215 +0.9 6.4 YeaH/YhbH family protein compare
ABZR87_RS12410 +0.9 4.0 LysR substrate-binding domain-containing protein compare
ABZR87_RS22275 +0.9 6.3 flagellar hook protein FlgE compare
ABZR87_RS23235 +0.9 5.1 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS13010 +0.9 1.1 GPW/gp25 family protein compare
ABZR87_RS12120 +0.9 1.0 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS21345 +0.9 2.3 tRNA-OTHER compare
ABZR87_RS15500 +0.9 3.9 glycosyltransferase compare
ABZR87_RS09635 +0.8 0.6 ribosome small subunit-dependent GTPase A compare
ABZR87_RS05115 +0.8 3.2 ATP-dependent protease subunit HslV compare
ABZR87_RS05315 +0.8 7.4 efflux RND transporter permease subunit compare
ABZR87_RS19475 +0.8 5.0 PAS domain-containing protein compare
ABZR87_RS11225 +0.8 4.1 DHA2 family efflux MFS transporter permease subunit compare
ABZR87_RS17945 +0.8 5.3 flagellar motor stator protein MotA compare
ABZR87_RS23280 +0.8 3.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02425 +0.8 5.0 ABC transporter substrate-binding protein compare
ABZR87_RS01380 +0.8 5.5 response regulator compare
ABZR87_RS22210 +0.8 3.8 flagellar type III secretion system pore protein FliP compare
ABZR87_RS13220 +0.8 3.2 peroxiredoxin compare
ABZR87_RS16140 +0.8 5.9 phosphoenolpyruvate carboxylase compare
ABZR87_RS14320 +0.8 1.9 (2Fe-2S)-binding protein compare
ABZR87_RS06960 +0.8 1.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
ABZR87_RS22335 +0.8 6.2 GGDEF and EAL domain-containing protein compare
ABZR87_RS11715 +0.8 1.7 glutathione ABC transporter permease GsiC compare
ABZR87_RS22255 +0.8 3.2 flagellar basal body P-ring protein FlgI compare
ABZR87_RS02435 +0.8 6.6 ABC transporter ATP-binding protein compare
ABZR87_RS16080 +0.8 1.2 P-II family nitrogen regulator compare
ABZR87_RS16270 +0.8 1.2 cold-shock protein compare
ABZR87_RS21975 +0.8 3.5 hypothetical protein compare
ABZR87_RS03405 +0.8 3.6 type II secretion system protein N compare
ABZR87_RS01510 +0.8 1.4 YidB family protein compare
ABZR87_RS11230 +0.8 3.6 HlyD family secretion protein compare
ABZR87_RS14910 +0.8 2.1 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS22285 +0.8 3.4 flagellar basal body rod protein FlgC compare
ABZR87_RS13050 +0.8 0.9 GpE family phage tail protein compare
ABZR87_RS13120 +0.8 3.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS17105 +0.8 0.9 copper-binding protein compare
ABZR87_RS14145 +0.8 2.7 leucine efflux protein LeuE compare
ABZR87_RS08400 +0.8 1.8 glycine zipper 2TM domain-containing protein compare
ABZR87_RS22055 +0.8 1.8 flagellar hook-length control protein FliK compare
ABZR87_RS13125 +0.8 3.1 hypothetical protein compare
ABZR87_RS22310 +0.7 4.3 response regulator transcription factor compare
ABZR87_RS01485 +0.7 2.3 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS18315 +0.7 1.6 DUF971 domain-containing protein compare
ABZR87_RS17340 +0.7 1.4 MarR family transcriptional regulator compare
ABZR87_RS20675 +0.7 1.6 cupin domain-containing protein compare
ABZR87_RS12400 +0.7 1.9 M20 aminoacylase family protein compare
ABZR87_RS20450 +0.7 1.1 HAD family phosphatase compare
ABZR87_RS22060 +0.7 2.7 flagellar export protein FliJ compare
ABZR87_RS14240 +0.7 2.3 DUF4743 domain-containing protein compare
ABZR87_RS17570 +0.7 1.9 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment