Experiment set3IT030 for Ralstonia sp. UNC404CL21Col
no_plant_rhizosphere sample 3; outgrowth in LB
Group: no_plant_rhizosphereMedia:
Culturing: CL21_ML4, potted plant
By: Dawn Chiniquy on 4-Apr-19
Specific Phenotypes
For 17 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ascorbate and aldarate metabolism
- Purine metabolism
- Ubiquinone and menaquinone biosynthesis
- Glutamate metabolism
- Alanine and aspartate metabolism
- Penicillin and cephalosporin biosynthesis
- beta-Lactam resistance
- beta-Alanine metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Propanoate metabolism
- Butanoate metabolism
- Biotin metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 4-aminobutanoate degradation I | 2 | 2 | 1 |
| polyphosphate metabolism | 2 | 2 | 1 |
| 4-aminobutanoate degradation III | 2 | 2 | 1 |
| homotaurine degradation | 2 | 1 | 1 |
| 4-aminobutanoate degradation II | 2 | 1 | 1 |
| superpathway of 4-aminobutanoate degradation | 3 | 2 | 1 |
| biotin biosynthesis from 8-amino-7-oxononanoate I | 4 | 4 | 1 |
| GABA shunt I | 4 | 3 | 1 |
| GABA shunt II | 4 | 3 | 1 |
| ppGpp metabolism | 6 | 6 | 1 |
| 4-aminobutanoate degradation V | 7 | 3 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 5 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 7 | 1 |
| biotin biosynthesis I | 15 | 13 | 1 |
| nicotine degradation I (pyridine pathway) | 17 | 4 | 1 |