Experiment set3IT029 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Choline chloride 200 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_339 -3.9 -3.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_2005 -3.2 -3.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1307 -3.1 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2417 -2.9 -3.4 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_2105 -2.8 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2173 -2.4 -3.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_888 -2.4 -5.2 Transglycosylase, Slt family compare
Pf1N1B4_5618 -2.3 -4.0 Excinuclease ABC subunit C compare
Pf1N1B4_4640 -2.1 -5.6 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_327 -2.0 -2.2 hypothetical protein compare
Pf1N1B4_3864 -2.0 -7.4 Recombination protein RecR compare
Pf1N1B4_2283 -1.9 -1.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_126 -1.8 -1.9 Pirin compare
Pf1N1B4_1827 -1.8 -3.4 FIG00953482: hypothetical protein compare
Pf1N1B4_26 -1.8 -6.9 Excinuclease ABC subunit B compare
Pf1N1B4_1544 -1.8 -7.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2959 -1.7 -4.7 FIG067310: hypothetical protein compare
Pf1N1B4_1159 -1.7 -3.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_2416 -1.6 -6.5 Choline dehydrogenase (EC 1.1.99.1) conserved
Pf1N1B4_3168 -1.6 -3.4 AmpG permease compare
Pf1N1B4_2004 -1.6 -2.5 putative membrane protein compare
Pf1N1B4_2611 -1.6 -10.2 Excinuclease ABC subunit A compare
Pf1N1B4_476 -1.6 -3.3 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_1492 -1.5 -1.5 FIG00959437: hypothetical protein compare
Pf1N1B4_2885 -1.5 -4.9 Paraquat-inducible protein A compare
Pf1N1B4_1234 -1.5 -3.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_886 -1.5 -2.1 FIG137478: Hypothetical protein compare
Pf1N1B4_337 -1.5 -4.4 O-antigen export system permease protein RfbD compare
Pf1N1B4_5370 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_649 -1.4 -3.6 Small-conductance mechanosensitive channel compare
Pf1N1B4_1 -1.4 -2.3 Colicin V production protein compare
Pf1N1B4_3779 -1.4 -3.3 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_2021 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_2768 -1.4 -3.4 DNA repair protein RadA compare
Pf1N1B4_2884 -1.4 -4.3 Paraquat-inducible protein A compare
Pf1N1B4_4275 -1.4 -2.6 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_1906 -1.4 -3.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1927 -1.4 -6.5 DNA recombination and repair protein RecF compare
Pf1N1B4_2453 -1.4 -1.4 hypothetical protein compare
Pf1N1B4_3544 -1.3 -3.2 Nitroreductase family protein compare
Pf1N1B4_2223 -1.3 -4.7 FIG006231: RNA-binding protein compare
Pf1N1B4_4669 -1.3 -1.8 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_3143 -1.3 -2.5 RecA protein compare
Pf1N1B4_2106 -1.3 -2.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1637 -1.3 -2.4 FIG00954739: hypothetical protein compare
Pf1N1B4_2284 -1.3 -3.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_567 -1.3 -2.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_2493 -1.3 -2.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_739 -1.3 -3.9 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_3246 -1.3 -3.2 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_2949 -1.3 -2.4 FIG00956396: hypothetical protein compare
Pf1N1B4_890 -1.2 -2.3 DNA recombination and repair protein RecO compare
Pf1N1B4_1399 -1.2 -3.4 FIG003573: hypothetical protein compare
Pf1N1B4_5393 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_591 -1.2 -3.1 Aldose 1-epimerase compare
Pf1N1B4_336 -1.2 -8.5 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_4849 -1.2 -2.1 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2823 -1.2 -1.5 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_3468 -1.2 -1.8 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_4004 -1.1 -2.2 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_5804 -1.1 -1.6 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_2791 -1.1 -1.8 Putative inner membrane protein (Fragment) compare
Pf1N1B4_3390 -1.1 -2.5 RNA polymerase sigma factor RpoE compare
Pf1N1B4_1402 -1.1 -2.5 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_5747 -1.1 -1.5 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_2924 -1.1 -2.7 FIG00955589: hypothetical protein compare
Pf1N1B4_3688 -1.1 -4.7 FIG00956657: hypothetical protein compare
Pf1N1B4_1115 -1.1 -6.8 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_1057 -1.1 -2.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1116 -1.1 -7.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1481 -1.1 -4.3 Protein involved in catabolism of external DNA compare
Pf1N1B4_5718 -1.1 -2.0 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_1451 -1.1 -3.4 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf1N1B4_2418 -1.1 -3.5 HTH-type transcriptional regulator BetI compare
Pf1N1B4_4544 -1.1 -1.9 Uncharacterized protein ImpA compare
Pf1N1B4_2155 -1.1 -3.6 Glycine cleavage system transcriptional activator compare
Pf1N1B4_606 -1.1 -2.0 Iron siderophore sensor protein compare
Pf1N1B4_1351 -1.1 -2.8 Tabtoxin resistance protein compare
Pf1N1B4_583 -1.0 -2.2 FIG00957748: hypothetical protein compare
Pf1N1B4_4108 -1.0 -1.7 Hydrolase, alpha/beta fold family compare
Pf1N1B4_3447 -1.0 -3.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_2102 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_688 -1.0 -1.9 FIG00955483: hypothetical protein compare
Pf1N1B4_5095 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_5779 -1.0 -2.1 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_3965 -1.0 -1.7 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_4043 -1.0 -2.5 Type II and III secretion system family protein compare
Pf1N1B4_1178 -1.0 -3.5 DNA repair protein RecN compare
Pf1N1B4_4062 -1.0 -3.5 FIG065221: Holliday junction DNA helicase compare
Pf1N1B4_3325 -1.0 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4460 -1.0 -1.7 Cytochrome b561 compare
Pf1N1B4_5112 -1.0 -1.7 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_2792 -1.0 -2.7 FIG00953454: hypothetical protein compare
Pf1N1B4_2147 -1.0 -3.2 Putrescine utilization regulator compare
Pf1N1B4_5342 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_474 -1.0 -3.6 FIG00954461: hypothetical protein compare
Pf1N1B4_182 -1.0 -2.4 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf1N1B4_4695 -0.9 -2.6 hypothetical protein compare
Pf1N1B4_4873 -0.9 -2.5 clavaldehyde dehydrogenase compare
Pf1N1B4_335 -0.9 -6.0 Glycosyltransferase compare
Pf1N1B4_218 -0.9 -4.5 Periplasmic binding protein compare
Pf1N1B4_1608 -0.9 -1.6 FIG00956533: hypothetical protein compare
Pf1N1B4_630 -0.9 -3.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf1N1B4_4531 -0.9 -1.5 FIG01221261: hypothetical protein compare
Pf1N1B4_2247 -0.9 -1.9 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_2886 -0.9 -6.0 Paraquat-inducible protein B compare
Pf1N1B4_1434 -0.9 -4.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_5010 -0.9 -2.5 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_5827 -0.9 -1.8 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_3451 -0.9 -2.6 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4765 -0.9 -2.3 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_2874 -0.9 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_4594 -0.9 -1.4 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_4177 -0.9 -1.5 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_4636 -0.9 -1.6 TPR domain protein in aerotolerance operon compare
Pf1N1B4_1446 -0.9 -2.5 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf1N1B4_1546 -0.9 -2.9 Thermonuclease family protein compare
Pf1N1B4_2757 -0.9 -2.4 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_3687 -0.9 -2.2 FIG00953885: hypothetical protein compare
Pf1N1B4_2094 -0.9 -2.7 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf1N1B4_1143 -0.9 -3.0 Phosphodiesterase/alkaline phosphatase D compare
Pf1N1B4_2085 -0.9 -1.9 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_4621 -0.9 -2.2 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_3467 -0.9 -1.4 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_5077 -0.9 -1.2 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_1781 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_483 -0.9 -1.7 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_1048 -0.9 -2.7 Sulfate transporter, CysZ-type compare
Pf1N1B4_5568 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_1114 -0.8 -2.9 ABC transporter, ATP-binding protein compare
Pf1N1B4_1819 -0.8 -2.2 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_3973 -0.8 -2.1 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_4644 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_3620 -0.8 -1.5 Flagellar biosynthesis protein FliR compare
Pf1N1B4_816 -0.8 -2.3 Integral membrane protein compare
Pf1N1B4_4109 -0.8 -2.9 Cytochrome c2 compare
Pf1N1B4_1593 -0.8 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_547 -0.8 -2.3 3-phosphoglycerate kinase compare
Pf1N1B4_5308 -0.8 -3.6 hypothetical protein compare
Pf1N1B4_2359 -0.8 -2.0 Chemotaxis signal transduction protein compare
Pf1N1B4_2741 -0.8 -2.0 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf1N1B4_1235 -0.8 -3.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2686 -0.8 -2.9 DedA protein compare
Pf1N1B4_3866 -0.8 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_1205 -0.8 -3.7 Sulfate permease compare
Pf1N1B4_4522 -0.8 -1.7 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_1629 -0.8 -2.3 FIG00958480: hypothetical protein compare
Pf1N1B4_1975 -0.8 -1.5 Transcriptional regulator, AsnC family compare
Pf1N1B4_313 -0.8 -1.9 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf1N1B4_4446 -0.8 -1.1 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_381 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_1042 -0.8 -1.3 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_4632 -0.8 -2.0 Exonuclease SbcC compare
Pf1N1B4_644 -0.8 -1.4 Cold shock protein CspC compare
Pf1N1B4_844 -0.8 -2.6 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_883 -0.8 -1.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_958 -0.8 -1.5 Stringent starvation protein B compare
Pf1N1B4_4874 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5340 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_5489 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_2096 -0.8 -1.3 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_668 -0.8 -3.2 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf1N1B4_724 -0.8 -2.3 DNA-binding response regulator ColR compare
Pf1N1B4_3491 -0.8 -2.3 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf1N1B4_21 -0.8 -2.0 Probable hydrolase compare
Pf1N1B4_2261 -0.8 -3.4 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_1389 -0.8 -1.7 Lysine decarboxylase family compare
Pf1N1B4_4754 -0.7 -2.4 GNAT family acetyltransferase VC2332 compare
Pf1N1B4_403 -0.7 -1.3 FIG00965925: hypothetical protein compare
Pf1N1B4_3386 -0.7 -2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_2534 -0.7 -1.2 DnaJ-like protein DjlA compare
Pf1N1B4_4189 -0.7 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_240 -0.7 -1.1 Transcriptional regulators compare
Pf1N1B4_1574 -0.7 -2.7 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf1N1B4_4173 -0.7 -2.5 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
Pf1N1B4_5753 -0.7 -1.6 putative membrane protein compare
Pf1N1B4_5453 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_5814 -0.7 -1.8 putative membrane protein compare
Pf1N1B4_1890 -0.7 -2.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf1N1B4_3445 -0.7 -1.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_2984 -0.7 -2.5 VacJ-like lipoprotein precursor compare
Pf1N1B4_4952 -0.7 -1.2 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_3885 -0.7 -2.2 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_2550 -0.7 -1.7 Lipoate-protein ligase A compare
Pf1N1B4_2993 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_2234 -0.7 -2.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_4509 -0.7 -1.7 Aldose 1-epimerase compare
Pf1N1B4_1733 -0.7 -4.1 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) compare
Pf1N1B4_4960 -0.7 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_122 -0.7 -1.6 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_5137 -0.7 -3.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_1236 -0.7 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2477 -0.7 -2.3 response regulator compare
Pf1N1B4_5411 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_5330 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_4217 -0.7 -2.0 MISCELLANEOUS; Hypothetical/Global homology compare
Pf1N1B4_1661 -0.7 -2.5 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_2873 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2339 -0.7 -1.3 COG1872 compare
Pf1N1B4_3606 -0.7 -2.6 Flagellar assembly protein FliH compare


Specific Phenotypes

For 6 genes in this experiment

For stress Choline chloride in Pseudomonas fluorescens FW300-N1B4

For stress Choline chloride across organisms