Experiment set3IT029 for Ralstonia sp. UNC404CL21Col

no_plant_rhizosphere sample 2; outgrowth in LB

Group: no_plant_rhizosphere
Media:
Culturing: CL21_ML4, potted plant
By: Dawn Chiniquy on 4-Apr-19

Specific Phenotypes

For 12 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Biotin biosynthesis	1
Campylobacter Iron Metabolism	1
Flagellar motility	1
Flagellum	1
Iron acquisition in Vibrio	1
Lipid A modifications	1
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria	1
Transcription initiation, bacterial sigma factors	1
Transport of Iron	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glutamate metabolism
• Alanine and aspartate metabolism
• beta-Alanine metabolism
• Propanoate metabolism
• Butanoate metabolism
• Biotin metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
4-aminobutanoate degradation I	2	2	1
4-aminobutanoate degradation III	2	2	1
homotaurine degradation	2	1	1
4-aminobutanoate degradation II	2	1	1
superpathway of 4-aminobutanoate degradation	3	2	1
biotin biosynthesis from 8-amino-7-oxononanoate I	4	4	1
GABA shunt I	4	3	1
GABA shunt II	4	3	1
4-aminobutanoate degradation V	7	3	1
superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation	11	5	1
superpathway of L-arginine and L-ornithine degradation	13	7	1
biotin biosynthesis I	15	13	1
nicotine degradation I (pyridine pathway)	17	4	1