Experiment set3IT028 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2005 -3.5 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3143 -2.7 -4.0 RecA protein compare
Pf1N1B4_3547 -2.1 -2.4 DNA-binding response regulator compare
Pf1N1B4_5100 -2.0 -3.4 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_2106 -2.0 -3.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2105 -1.9 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3525 -1.9 -2.7 hydrolase, alpha/beta fold family compare
Pf1N1B4_4001 -1.8 -2.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1370 -1.6 -1.2 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_3909 -1.5 -2.9 Cell division inhibitor-related protein compare
Pf1N1B4_3991 -1.5 -2.1 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_1057 -1.5 -2.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3745 -1.5 -3.1 Thiamin ABC transporter, transmembrane component compare
Pf1N1B4_3713 -1.5 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_769 -1.5 -5.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1472 -1.5 -1.9 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3168 -1.4 -3.0 AmpG permease compare
Pf1N1B4_4030 -1.4 -3.0 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_197 -1.4 -2.2 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_2339 -1.3 -1.9 COG1872 compare
Pf1N1B4_4818 -1.3 -2.5 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5864 -1.3 -2.0 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_4509 -1.2 -2.7 Aldose 1-epimerase compare
Pf1N1B4_2209 -1.2 -7.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3742 -1.2 -1.8 Oxidoreductase, zinc-binding compare
Pf1N1B4_615 -1.2 -2.3 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_1781 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_4028 -1.2 -2.6 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3906 -1.2 -2.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4699 -1.2 -2.7 Multidrug translocase MdfA compare
Pf1N1B4_4765 -1.2 -2.8 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_1975 -1.1 -2.2 Transcriptional regulator, AsnC family compare
Pf1N1B4_2885 -1.1 -4.2 Paraquat-inducible protein A compare
Pf1N1B4_3072 -1.1 -3.2 hypothetical protein compare
Pf1N1B4_4168 -1.1 -2.0 putative membrane protein compare
Pf1N1B4_3508 -1.1 -2.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5371 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_4040 -1.1 -2.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_4386 -1.1 -2.0 Inositol transport system sugar-binding protein compare
Pf1N1B4_2456 -1.1 -2.5 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_1906 -1.1 -2.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4960 -1.1 -2.3 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_128 -1.1 -2.1 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_1191 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_3866 -1.1 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_3833 -1.0 -5.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4585 -1.0 -2.2 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_267 -1.0 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_5724 -1.0 -1.7 High-affinity iron permease compare
Pf1N1B4_4038 -1.0 -2.3 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2851 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_1236 -1.0 -4.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2039 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_683 -1.0 -2.9 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_681 -1.0 -2.7 FOG: GGDEF domain compare
Pf1N1B4_4554 -1.0 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_3498 -1.0 -1.9 FIG00953240: hypothetical protein compare
Pf1N1B4_5284 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_5823 -1.0 -1.4 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_656 -1.0 -5.0 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_133 -1.0 -2.2 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_6035 -1.0 -2.6 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_4946 -1.0 -2.6 putative aminotransferase compare
Pf1N1B4_1581 -0.9 -2.3 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_2856 -0.9 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1234 -0.9 -2.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_476 -0.9 -2.1 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_4839 -0.9 -1.9 lipoprotein compare
Pf1N1B4_1619 -0.9 -5.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_3305 -0.9 -2.2 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_4035 -0.9 -1.8 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4083 -0.9 -1.9 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4336 -0.9 -1.8 FMN-dependent NADH-azoreductase compare
Pf1N1B4_381 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4225 -0.9 -2.8 transcriptional regulator, AraC family compare
Pf1N1B4_5112 -0.9 -2.1 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_4222 -0.9 -3.7 putative tyrosinase compare
Pf1N1B4_560 -0.9 -2.8 Transcriptional regulators, LysR family compare
Pf1N1B4_2114 -0.9 -3.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_2269 -0.9 -1.8 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_2047 -0.9 -2.5 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_4603 -0.9 -1.1 hypothetical protein compare
Pf1N1B4_3631 -0.8 -2.8 Flagellar motor rotation protein MotA compare
Pf1N1B4_4041 -0.8 -2.4 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4931 -0.8 -1.3 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1610 -0.8 -2.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_1389 -0.8 -1.9 Lysine decarboxylase family compare
Pf1N1B4_3559 -0.8 -6.0 Aromatic amino acid transport protein AroP compare
Pf1N1B4_1570 -0.8 -2.5 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_5090 -0.8 -2.1 glycosyl transferase, family 2 compare
Pf1N1B4_3468 -0.8 -1.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_159 -0.8 -2.2 Putative threonine efflux protein compare
Pf1N1B4_1228 -0.8 -2.5 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Pf1N1B4_2886 -0.8 -5.5 Paraquat-inducible protein B compare
Pf1N1B4_644 -0.8 -1.5 Cold shock protein CspC compare
Pf1N1B4_2949 -0.8 -1.8 FIG00956396: hypothetical protein compare
Pf1N1B4_175 -0.8 -1.4 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3263 -0.8 -2.9 FIG126011: Hypothetical protein compare
Pf1N1B4_5721 -0.8 -1.7 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_1115 -0.8 -5.1 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_3499 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_5357 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_5666 -0.8 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_46 -0.8 -2.4 Copper resistance protein C precursor compare
Pf1N1B4_886 -0.8 -1.4 FIG137478: Hypothetical protein compare
Pf1N1B4_414 -0.8 -2.5 transcriptional regulator compare
Pf1N1B4_5330 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_4761 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_1180 -0.8 -0.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_3284 -0.8 -2.5 Antitoxin 1 compare
Pf1N1B4_3241 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_1247 -0.8 -1.8 transcriptional regulator, MerR family compare
Pf1N1B4_3272 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_2035 -0.8 -2.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_5402 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_3988 -0.7 -2.9 Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_1614 -0.7 -1.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1235 -0.7 -3.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_4569 -0.7 -1.6 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_3069 -0.7 -1.9 FIG00954614: hypothetical protein compare
Pf1N1B4_4482 -0.7 -1.8 FIG146518: Zn-dependent hydrolases, including glyoxylases compare
Pf1N1B4_4715 -0.7 -1.1 Transcriptional regulator compare
Pf1N1B4_2021 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_3260 -0.7 -2.0 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_4802 -0.7 -1.4 polysaccharide deacetylase compare
Pf1N1B4_1819 -0.7 -2.2 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_4362 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_4455 -0.7 -1.3 FIG00953528: hypothetical protein compare
Pf1N1B4_4166 -0.7 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_795 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_2352 -0.7 -2.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_3093 -0.7 -1.5 Outer membrane protein H precursor compare
Pf1N1B4_5628 -0.7 -1.8 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf1N1B4_1244 -0.7 -2.6 Nucleoside ABC transporter, permease protein 1 compare
Pf1N1B4_4973 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_3585 -0.7 -1.8 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Pf1N1B4_2163 -0.7 -0.9 hypothetical protein compare
Pf1N1B4_3844 -0.7 -2.4 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) compare
Pf1N1B4_5912 -0.7 -2.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1374 -0.7 -1.6 HupE-UreJ family metal transporter compare
Pf1N1B4_2792 -0.7 -1.9 FIG00953454: hypothetical protein compare
Pf1N1B4_4667 -0.7 -1.3 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_1365 -0.7 -1.5 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2026 -0.7 -1.5 Transcriptional regulator compare
Pf1N1B4_13 -0.7 -1.6 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_4285 -0.7 -1.7 Inositol transport system sugar-binding protein compare
Pf1N1B4_1609 -0.7 -2.1 FIG00953806: hypothetical protein compare
Pf1N1B4_578 -0.7 -1.3 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4385 -0.7 -1.4 Gfa-like protein compare
Pf1N1B4_1403 -0.7 -3.3 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2322 -0.7 -1.3 FIG015547: peptidase, M16 family compare
Pf1N1B4_201 -0.7 -1.3 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_2912 -0.7 -1.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3864 -0.6 -3.1 Recombination protein RecR compare
Pf1N1B4_673 -0.6 -1.4 MoxR-like ATPases compare
Pf1N1B4_2224 -0.6 -1.2 FIG00953390: hypothetical protein compare
Pf1N1B4_1096 -0.6 -2.3 Septum formation protein Maf compare
Pf1N1B4_1116 -0.6 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_3510 -0.6 -2.2 nucleoprotein/polynucleotide-associated enzyme compare
Pf1N1B4_230 -0.6 -0.9 FIG00953472: hypothetical protein compare
Pf1N1B4_4448 -0.6 -1.2 COGs COG2343 compare
Pf1N1B4_5659 -0.6 -4.6 NfuA Fe-S protein maturation compare
Pf1N1B4_5834 -0.6 -1.3 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_3541 -0.6 -1.8 FIG027190: Putative transmembrane protein compare
Pf1N1B4_1042 -0.6 -1.5 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_2492 -0.6 -1.6 FIG00954771: hypothetical protein compare
Pf1N1B4_1835 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_3950 -0.6 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4833 -0.6 -1.2 DNA-binding response regulator, LuxR family compare
Pf1N1B4_3779 -0.6 -1.1 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4870 -0.6 -1.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_2917 -0.6 -3.5 FIG140336: TPR domain protein compare
Pf1N1B4_3352 -0.6 -1.8 tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) compare
Pf1N1B4_2244 -0.6 -1.1 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_3709 -0.6 -1.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_1544 -0.6 -3.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1870 -0.6 -1.4 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3972 -0.6 -1.8 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_2750 -0.6 -1.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5509 -0.6 -0.9 hypothetical protein compare
Pf1N1B4_4906 -0.6 -2.8 Lipase (EC 3.1.1.3) compare
Pf1N1B4_2937 -0.6 -1.9 FIG00953775: hypothetical protein compare
Pf1N1B4_2036 -0.6 -1.9 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_4700 -0.6 -1.3 FIG00956898: hypothetical protein compare
Pf1N1B4_652 -0.6 -4.0 Sensory box histidine kinase compare
Pf1N1B4_5159 -0.6 -2.2 Cellulose synthase operon protein C compare
Pf1N1B4_3768 -0.6 -1.4 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_3722 -0.6 -1.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4657 -0.6 -1.4 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_3789 -0.6 -1.6 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_4644 -0.6 -1.5 hypothetical protein compare
Pf1N1B4_2071 -0.6 -1.0 Protein phosphatase ImpM compare
Pf1N1B4_2283 -0.6 -1.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2612 -0.6 -1.8 Putative transport protein compare
Pf1N1B4_1750 -0.6 -1.4 Death on curing protein, Doc toxin compare
Pf1N1B4_866 -0.6 -0.8 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_2791 -0.6 -1.3 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2853 -0.6 -1.0 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4806 -0.6 -1.7 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_1579 -0.6 -1.7 Imidazolonepropionase (EC 3.5.2.7) (from data) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments