Experiment set3IT028 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03450 -9.3 -4.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS07345 -5.2 -9.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS05500 -5.1 -10.2 2-isopropylmalate synthase compare
MMP_RS07845 -4.4 -5.4 LL-diaminopimelate aminotransferase compare
MMP_RS01455 -4.3 -11.4 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03435 -4.3 -3.4 ketol-acid reductoisomerase compare
MMP_RS07730 -4.2 -4.0 pyruvate synthase subunit beta compare
MMP_RS06270 -4.2 -10.7 TIGR00300 family protein compare
MMP_RS03035 -4.1 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04215 -4.0 -8.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS04615 -3.9 -4.6 PDGLE domain-containing protein compare
MMP_RS03315 -3.8 -2.2 ferrous iron transport protein A compare
MMP_RS07755 -3.8 -2.1 DUF555 domain-containing protein compare
MMP_RS06375 -3.8 -8.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05920 -3.7 -1.3 50S ribosomal protein L37e compare
MMP_RS07005 -3.7 -1.3 4Fe-4S binding protein compare
MMP_RS03700 -3.5 -13.7 sodium:proton antiporter compare
MMP_RS02900 -3.5 -1.2 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01955 -3.3 -3.6 hypothetical protein compare
MMP_RS06285 -3.3 -3.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01910 -3.2 -11.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08720 -3.2 -3.0 4Fe-4S binding protein compare
MMP_RS06120 -3.2 -4.4 UPF0147 family protein compare
MMP_RS04685 -3.1 -5.3 DUF126 domain-containing protein compare
MMP_RS03445 -3.1 -2.1 methanogenesis marker 17 protein compare
MMP_RS06400 -3.1 -2.3 4Fe-4S binding protein compare
MMP_RS02345 -3.1 -6.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01385 -3.0 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00300 -3.0 -1.5 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01900 -3.0 -15.6 hypothetical protein compare
MMP_RS01920 -3.0 -12.4 glycosyltransferase family 2 protein compare
MMP_RS00750 -3.0 -3.7 fumarate hydratase compare
MMP_RS03475 -3.0 -1.3 hypothetical protein compare
MMP_RS01925 -2.9 -8.7 DUF1616 domain-containing protein compare
MMP_RS01020 -2.9 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05930 -2.9 -3.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS08635 -2.9 -3.8 UbiA family prenyltransferase compare
MMP_RS01915 -2.8 -11.4 DUF354 domain-containing protein compare
MMP_RS01905 -2.8 -13.2 glycosyltransferase compare
MMP_RS04620 -2.8 -14.0 cobalt transporter CbiM compare
MMP_RS01005 -2.8 -2.9 riboflavin synthase compare
MMP_RS01830 -2.8 -3.2 tRNA-Val compare
MMP_RS02010 -2.8 -12.0 PHP domain-containing protein compare
MMP_RS06730 -2.8 -3.2 phosphopantothenate/pantothenate synthetase compare
MMP_RS07185 -2.7 -17.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01225 -2.7 -8.2 DUF5379 domain-containing protein compare
MMP_RS07955 -2.7 -8.6 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS04720 -2.7 -4.3 DedA family protein compare
MMP_RS04605 -2.7 -8.1 cobalt ECF transporter T component CbiQ compare
MMP_RS02240 -2.7 -6.0 methanogenesis marker 7 protein compare
MMP_RS03400 -2.6 -5.2 archease compare
MMP_RS07545 -2.6 -1.7 HTH domain-containing protein compare
MMP_RS03600 -2.6 -3.7 triose-phosphate isomerase compare
MMP_RS05425 -2.6 -6.6 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01795 -2.5 -2.7 methanogenesis marker 6 protein compare
MMP_RS05265 -2.5 -4.5 2-isopropylmalate synthase compare
MMP_RS08650 -2.5 -4.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07735 -2.5 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04500 -2.4 -15.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS00305 -2.4 -2.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS02135 -2.4 -6.1 DUF5612 domain-containing protein compare
MMP_RS08715 -2.4 -3.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01895 -2.4 -11.9 flippase compare
MMP_RS08820 -2.3 -8.5 hypothetical protein compare
MMP_RS01700 -2.3 -1.6 dihydroxy-acid dehydratase compare
MMP_RS02145 -2.3 -7.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS07630 -2.3 -2.0 ATP-binding cassette domain-containing protein compare
MMP_RS04710 -2.3 -2.6 hypothetical protein compare
MMP_RS06630 -2.3 -2.2 UPF0058 family protein compare
MMP_RS09020 -2.3 -2.7 hypothetical protein compare
MMP_RS04780 -2.3 -4.7 ribonuclease P compare
MMP_RS01175 -2.3 -7.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS00110 -2.3 -4.3 hypothetical protein compare
MMP_RS07390 -2.2 -4.4 cell division protein FtsZ compare
MMP_RS06475 -2.2 -5.9 FAD-dependent oxidoreductase compare
MMP_RS03390 -2.2 -9.1 malate dehydrogenase compare
MMP_RS08760 -2.2 -2.1 hypothetical protein compare
MMP_RS08435 -2.2 -4.4 Era-like GTP-binding protein compare
MMP_RS08210 -2.2 -3.8 phosphatidylglycerophosphatase A compare
MMP_RS00520 -2.1 -3.1 RNA polymerase Rpb4 family protein compare
MMP_RS02195 -2.1 -4.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00515 -2.1 -1.6 DUF655 domain-containing protein compare
MMP_RS00685 -2.1 -8.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06900 -2.0 -4.8 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS05345 -2.0 -9.0 hypothetical protein compare
MMP_RS01940 -2.0 -6.2 MoxR family ATPase compare
MMP_RS08300 -2.0 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS05815 -2.0 -7.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05925 -2.0 -4.1 small nuclear ribonucleoprotein compare
MMP_RS01975 -2.0 -11.2 hypothetical protein compare
MMP_RS01970 -1.9 -7.1 TIGR04279 domain-containing protein compare
MMP_RS05640 -1.9 -6.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01755 -1.9 -2.5 DUF2097 domain-containing protein compare
MMP_RS06625 -1.9 -2.7 DNA primase compare
MMP_RS08745 -1.9 -6.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06370 -1.9 -6.3 biotin synthase BioB compare
MMP_RS08330 -1.9 -5.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS06130 -1.9 -4.5 peptidylprolyl isomerase compare
MMP_RS01725 -1.9 -6.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS01325 -1.9 -3.8 dihydroneopterin aldolase family protein compare
MMP_RS01885 -1.9 -8.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00695 -1.9 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS04585 -1.9 -9.2 AIR synthase related protein compare
MMP_RS07750 -1.8 -6.3 DUF357 domain-containing protein compare
MMP_RS01500 -1.8 -2.6 CBS domain-containing protein compare
MMP_RS08460 -1.8 -3.9 proteasome-activating nucleotidase compare
MMP_RS07605 -1.8 -5.6 diadenylate cyclase compare
MMP_RS01610 -1.8 -5.0 hypothetical protein compare
MMP_RS08095 -1.8 -7.6 dethiobiotin synthase compare
MMP_RS06670 -1.8 -4.3 glucose-6-phosphate isomerase compare
MMP_RS06230 -1.8 -3.6 helix-turn-helix domain-containing protein compare
MMP_RS03025 -1.8 -7.3 molybdenum cofactor guanylyltransferase compare
MMP_RS01800 -1.8 -6.2 TIGR00303 family protein compare
MMP_RS08105 -1.8 -9.9 6-carboxyhexanoate--CoA ligase compare
MMP_RS06310 -1.7 -3.2 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS07555 -1.7 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS06895 -1.7 -2.6 selenocysteine-specific translation elongation factor compare
MMP_RS05845 -1.7 -2.8 tRNA-intron lyase compare
MMP_RS07380 -1.7 -3.8 transcription elongation factor Spt5 compare
MMP_RS06340 -1.7 -6.6 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07600 -1.7 -3.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06885 -1.7 -4.7 50S ribosome-binding GTPase compare
MMP_RS04775 -1.7 -4.9 adenosylhomocysteinase compare
MMP_RS01880 -1.7 -4.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06020 -1.7 -5.1 archaeoflavoprotein AfpA compare
MMP_RS04090 -1.7 -3.8 hypothetical protein compare
MMP_RS01380 -1.7 -3.0 PHP domain-containing protein compare
MMP_RS08440 -1.7 -4.0 cell division protein SepF compare
MMP_RS01890 -1.7 -4.1 nucleotide sugar dehydrogenase compare
MMP_RS02245 -1.7 -4.8 hypothetical protein compare
MMP_RS00895 -1.6 -5.0 hypothetical protein compare
MMP_RS04790 -1.6 -10.8 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08790 -1.6 -3.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS05555 -1.6 -2.1 DUF4040 domain-containing protein compare
MMP_RS01935 -1.5 -7.7 DUF58 domain-containing protein compare
MMP_RS01220 -1.5 -7.6 hypothetical protein compare
MMP_RS06925 -1.5 -3.0 ribonuclease VapC4 compare
MMP_RS03640 -1.5 -4.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01945 -1.5 -5.6 DUF4350 domain-containing protein compare
MMP_RS08100 -1.5 -7.5 8-amino-7-oxononanoate synthase compare
MMP_RS01930 -1.5 -10.0 hypothetical protein compare
MMP_RS07875 -1.4 -5.8 hypothetical protein compare
MMP_RS05250 -1.4 -2.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01950 -1.4 -7.6 hypothetical protein compare
MMP_RS07645 -1.4 -5.2 aldehyde dehydrogenase family protein compare
MMP_RS00735 -1.4 -3.2 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06865 -1.4 -2.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06295 -1.4 -8.4 methanogenesis marker 14 protein compare
MMP_RS03140 -1.4 -9.5 hypothetical protein compare
MMP_RS01545 -1.4 -1.6 CBS domain-containing protein compare
MMP_RS03145 -1.4 -7.4 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02190 -1.3 -2.9 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS06105 -1.3 -6.9 hydrogenase maturation peptidase HycI compare
MMP_RS06940 -1.3 -3.3 polyprenyl diphosphate synthase compare
MMP_RS07580 -1.3 -3.6 DUF356 domain-containing protein compare
MMP_RS01960 -1.3 -0.8 hypothetical protein compare
MMP_RS03095 -1.3 -8.3 diphthine synthase compare
MMP_RS01265 -1.3 -2.2 hypothetical protein compare
MMP_RS07200 -1.3 -4.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07090 -1.3 -9.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07635 -1.3 -6.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS08370 -1.3 -0.9 cation:proton antiporter subunit C compare
MMP_RS00720 -1.3 -6.5 metal-dependent hydrolase compare
MMP_RS08785 -1.3 -1.7 RNA-protein complex protein Nop10 compare
MMP_RS08195 -1.3 -6.4 hypothetical protein compare
MMP_RS08165 -1.3 -2.1 phosphoglycerate dehydrogenase compare
MMP_RS07355 -1.3 -1.2 transcription factor S compare
MMP_RS02800 -1.3 -5.0 nucleotidyltransferase domain-containing protein compare
MMP_RS00810 -1.3 -8.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02875 -1.3 -9.8 chorismate pyruvate-lyase family protein compare
MMP_RS07420 -1.3 -5.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01875 -1.2 -7.1 N-acetyltransferase compare
MMP_RS07710 -1.2 -5.0 cell division protein FtsZ compare
MMP_RS06980 -1.2 -5.7 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07075 -1.2 -2.0 phosphomannomutase/phosphoglucomutase compare
MMP_RS02280 -1.2 -1.0 DUF211 domain-containing protein compare
MMP_RS07575 -1.2 -2.7 RNA ligase partner protein compare
MMP_RS00320 -1.2 -2.1 class I SAM-dependent methyltransferase compare
MMP_RS04955 -1.1 -5.5 DNA topoisomerase I compare
MMP_RS05550 -1.1 -0.8 cation:proton antiporter compare
MMP_RS08445 -1.1 -4.0 DUF2099 family protein compare
MMP_RS05460 -1.1 -8.0 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS04850 -1.1 -8.7 UPF0254 family protein compare
MMP_RS00040 -1.1 -5.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS07695 -1.1 -6.8 DUF3236 domain-containing protein compare
MMP_RS08890 -1.1 -7.6 glycosyltransferase family 4 protein compare
MMP_RS00900 -1.1 -2.7 50S ribosomal protein L39e compare
MMP_RS08595 -1.1 -1.1 flagellar protein C compare
MMP_RS06350 -1.1 -5.5 HesA/MoeB/ThiF family protein compare
MMP_RS06315 -1.1 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS03250 -1.0 -2.2 MJ1244 family protein compare
MMP_RS02165 -1.0 -5.2 tRNA-dihydrouridine synthase compare
MMP_RS01335 -1.0 -2.9 prefoldin subunit beta compare
MMP_RS05440 -1.0 -7.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS07425 -1.0 -4.5 GTP-binding protein compare
MMP_RS07195 -1.0 -6.6 M20 family metallo-hydrolase compare
MMP_RS00315 -1.0 -5.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS00985 -1.0 -4.1 CDC48 family AAA ATPase compare
MMP_RS00115 -1.0 -6.9 radical SAM protein compare
MMP_RS01720 -1.0 -1.0 replication factor C large subunit compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms