Experiment set3IT028 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
HSERO_RS00795 -6.1 -4.2 glycerol-3-phosphate dehydrogenase compare
HSERO_RS20330 -6.1 -5.9 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS16505 -5.6 -7.0 3-isopropylmalate dehydratase small subunit compare
HSERO_RS19445 -5.6 -10.0 anthranilate phosphoribosyltransferase compare
HSERO_RS18990 -5.4 -7.4 pyrroline-5-carboxylate reductase compare
HSERO_RS16480 -5.4 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS00455 -5.2 -12.6 homoserine O-acetyltransferase compare
HSERO_RS18430 -4.9 -5.2 chorismate mutase compare
HSERO_RS14670 -4.8 -17.6 phosphoenolpyruvate carboxylase compare
HSERO_RS19450 -4.7 -5.7 indole-3-glycerol-phosphate synthase compare
HSERO_RS16515 -4.6 -13.0 isopropylmalate isomerase compare
HSERO_RS19110 -4.6 -12.3 LysR family transcriptional regulator compare
HSERO_RS16500 -4.6 -8.2 3-isopropylmalate dehydrogenase compare
HSERO_RS16470 -4.5 -3.5 tryptophan synthase subunit alpha compare
HSERO_RS19595 -4.4 -13.1 glutamate synthase compare
HSERO_RS17185 -4.4 -8.4 2-isopropylmalate synthase compare
HSERO_RS10560 -4.3 -9.5 membrane protein compare
HSERO_RS09855 -4.2 -4.8 GTP pyrophosphokinase compare
HSERO_RS19435 -4.2 -10.9 anthranilate synthase subunit I compare
HSERO_RS01935 -4.2 -6.3 3-dehydroquinate dehydratase compare
HSERO_RS07160 -4.1 -7.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS08650 -4.1 -12.3 acetolactate synthase compare
HSERO_RS08660 -4.1 -5.8 ketol-acid reductoisomerase compare
HSERO_RS15565 -4.1 -3.9 sulfate adenylyltransferase subunit 2 compare
HSERO_RS02650 -4.1 -9.5 dihydroxy-acid dehydratase compare
HSERO_RS20315 -4.0 -4.0 imidazole glycerol phosphate synthase compare
HSERO_RS02330 -4.0 -8.7 aspartate carbamoyltransferase compare
HSERO_RS17815 -4.0 -2.7 glycosyl transferase compare
HSERO_RS20920 -4.0 -5.3 3-dehydroquinate synthase compare
HSERO_RS20350 -3.9 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS20310 -3.9 -4.3 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS20320 -3.9 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS20345 -3.8 -5.4 histidinol dehydrogenase compare
HSERO_RS16440 -3.7 -4.1 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS04325 -3.7 -7.0 helicase I compare
HSERO_RS15555 -3.5 -4.4 oxidoreductase compare
HSERO_RS15550 -3.5 -3.4 sulfite reductase compare
HSERO_RS01815 -3.2 -5.9 gamma-glutamyl kinase compare
HSERO_RS16475 -3.2 -2.8 tryptophan synthase subunit alpha compare
HSERO_RS15835 -3.1 -2.3 aspartate aminotransferase compare
HSERO_RS12985 -3.0 -5.6 L-lactate dehydrogenase compare
HSERO_RS20325 -3.0 -3.2 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS19115 -3.0 -6.1 D-lactate dehydrogenase compare
HSERO_RS01990 -2.9 -9.0 shikimate 5-dehydrogenase compare
HSERO_RS10455 -2.9 -8.8 aminotransferase compare
HSERO_RS15070 -2.8 -1.8 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS15570 -2.8 -6.9 sulfate adenylyltransferase compare
HSERO_RS15040 -2.8 -9.6 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS07755 -2.7 -5.3 glutamate racemase compare
HSERO_RS10460 -2.7 -1.4 homoserine dehydrogenase compare
HSERO_RS00835 -2.6 -4.2 molybdopterin biosynthesis protein MoeB compare
HSERO_RS00430 -2.6 -3.3 glutamate--cysteine ligase compare
HSERO_RS17900 -2.6 -2.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS02120 -2.5 -12.9 phosphomethylpyrimidine synthase ThiC compare
HSERO_RS02125 -2.5 -8.9 thiamine biosynthesis protein ThiS compare
HSERO_RS02135 -2.5 -9.4 phosphomethylpyrimidine kinase compare
HSERO_RS15560 -2.4 -6.3 phosphoadenosine phosphosulfate reductase compare
HSERO_RS04335 -2.4 -4.6 sodium:proton antiporter compare
HSERO_RS02140 -2.4 -1.5 thiamine-phosphate synthase compare
HSERO_RS16885 -2.3 -0.8 magnesium-transporting ATPase compare
HSERO_RS03440 -2.2 -5.6 biopolymer transporter ExbD compare
HSERO_RS02340 -2.2 -13.4 dihydroorotase compare
HSERO_RS02130 -2.2 -5.7 thiazole synthase compare
HSERO_RS16740 -2.2 -9.1 GMC family oxidoreductase compare
HSERO_RS23945 -2.2 -2.3 cobyric acid synthase CobQ compare
HSERO_RS03445 -2.1 -4.9 biopolymer transport transmembrane protein compare
HSERO_RS04340 -2.1 -9.1 gamma-glutamyl ligase compare
HSERO_RS02160 -2.1 -1.7 DNA-dependent helicase compare
HSERO_RS15575 -2.1 -1.7 uroporphyrin-III C-methyltransferase compare
HSERO_RS13660 -2.0 -2.7 membrane protein compare
HSERO_RS16745 -2.0 -8.1 gluconate 2-dehydrogenase compare
HSERO_RS04330 -2.0 -5.9 ATP-dependent exonuclease compare
HSERO_RS03450 -1.9 -2.0 energy transducer protein TonB compare
HSERO_RS16735 -1.8 -6.6 alcohol dehydrogenase compare
HSERO_RS00800 -1.8 -3.1 hypothetical protein compare
HSERO_RS10960 -1.8 -4.7 PEP synthetase regulatory protein compare
HSERO_RS19510 -1.7 -6.1 threonine dehydratase compare
HSERO_RS03595 -1.7 -3.3 cation transporter compare
HSERO_RS10815 -1.7 -5.4 chromosome segregation protein SMC compare
HSERO_RS03540 -1.7 -1.0 dimethyladenosine transferase compare
HSERO_RS07600 -1.7 -4.1 threonine-phosphate decarboxylase compare
HSERO_RS05515 -1.6 -0.8 glucose-6-phosphate isomerase compare
HSERO_RS03085 -1.6 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS17810 -1.6 -0.6 glycosyl transferase compare
HSERO_RS02090 -1.6 -1.8 Holliday junction DNA helicase RuvA compare
HSERO_RS00965 -1.5 -0.9 trehalose-phosphatase compare
HSERO_RS09660 -1.5 -5.0 ribonuclease III compare
HSERO_RS09155 -1.5 -6.4 DNA topoisomerase IV subunit B compare
HSERO_RS10805 -1.5 -2.1 succinyldiaminopimelate aminotransferase compare
HSERO_RS08790 -1.5 -1.3 hypothetical protein compare
HSERO_RS09220 -1.4 -3.9 hypothetical protein compare
HSERO_RS18455 -1.4 -3.1 phosphoglycolate phosphatase compare
HSERO_RS09775 -1.4 -2.3 cobalamin synthase compare
HSERO_RS19590 -1.3 -0.8 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS13650 -1.3 -4.6 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS17980 -1.3 -1.3 GTP-binding protein compare
HSERO_RS06650 -1.3 -3.0 MarR family transcriptional regulator compare
HSERO_RS14840 -1.3 -2.0 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS13280 -1.3 -2.1 precorrin-4 C11-methyltransferase compare
HSERO_RS13285 -1.3 -1.9 precorrin-2 C20-methyltransferase compare
HSERO_RS09145 -1.2 -3.0 DNA topoisomerase IV subunit A compare
HSERO_RS19105 -1.2 -5.9 FAD-binding protein conserved
HSERO_RS16485 -1.2 -3.5 tRNA pseudouridine synthase A compare
HSERO_RS03520 -1.2 -2.5 aminoglycoside phosphotransferase compare
HSERO_RS13645 -1.2 -3.1 membrane protein compare
HSERO_RS22285 -1.2 -2.5 GntR family transcriptional regulator compare
HSERO_RS02325 -1.2 -6.7 uracil phosphoribosyltransferase compare
HSERO_RS19245 -1.1 -6.2 glutamate/aspartate transporter permease GltK compare
HSERO_RS21935 -1.1 -2.1 cytochrome C compare
HSERO_RS20355 -1.1 -3.8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS19100 -1.1 -5.3 FAD-binding protein conserved
HSERO_RS01965 -1.1 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
HSERO_RS02470 -1.1 -3.5 tRNA (guanine-N7)-methyltransferase compare
HSERO_RS08405 -1.1 -0.5 membrane protein compare
HSERO_RS09230 -1.1 -4.9 2-dehydropantoate 2-reductase compare
HSERO_RS02215 -1.1 -0.5 D-arabinitol 4-dehydrogenase compare
HSERO_RS10650 -1.1 -1.7 hypothetical protein compare
HSERO_RS13295 -1.1 -4.2 membrane protein compare
HSERO_RS08640 -1.1 -1.8 hypothetical protein compare
HSERO_RS13960 -1.1 -3.0 hypothetical protein compare
HSERO_RS17105 -1.0 -0.9 DNA polymerase III subunit epsilon compare
HSERO_RS00220 -1.0 -1.1 hypothetical protein compare
HSERO_RS16075 -1.0 -2.5 coproporphyrinogen III oxidase compare
HSERO_RS21695 -1.0 -4.8 hypothetical protein compare
HSERO_RS19095 -1.0 -4.9 glycolate oxidase conserved
HSERO_RS03045 -1.0 -5.7 HrcA family transcriptional regulator compare
HSERO_RS16750 -1.0 -4.0 DeoR family transcriptional regulator compare
HSERO_RS01510 -1.0 -3.1 membrane protein compare
HSERO_RS14185 -1.0 -1.6 FeS cluster assembly scaffold IscU compare
HSERO_RS16370 -1.0 -1.3 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS02245 -1.0 -1.5 hypothetical protein compare
HSERO_RS23655 -1.0 -1.6 phosphonate ABC transporter permease compare
HSERO_RS18875 -1.0 -1.4 ATPase compare
HSERO_RS13275 -1.0 -1.0 cobalamin biosynthesis protein CbiG compare
HSERO_RS02910 -1.0 -2.1 IclR family transcriptional regulator compare
HSERO_RS03480 -1.0 -4.6 NAD(P) transhydrogenase subunit alpha compare
HSERO_RS21340 -1.0 -3.8 septum formation inhibitor protein compare
HSERO_RS02100 -1.0 -1.1 4-oxalocrotonate decarboxylase compare
HSERO_RS17350 -1.0 -4.7 ABC transporter substrate-binding protein compare
HSERO_RS13240 -0.9 -3.8 cobalamin biosynthesis protein CobD compare
HSERO_RS11615 -0.9 -5.6 hypothetical protein compare
HSERO_RS11435 -0.9 -3.8 IclR family transcriptional regulator compare
HSERO_RS13260 -0.9 -2.1 cobinamide adenolsyltransferase compare
HSERO_RS08655 -0.9 -1.4 acetolactate synthase compare
HSERO_RS02610 -0.9 -1.7 hypothetical protein compare
HSERO_RS05505 -0.9 -2.3 transcriptional regulator compare
HSERO_RS03385 -0.9 -2.3 flavin reductase compare
HSERO_RS12855 -0.9 -2.2 histidine kinase compare
HSERO_RS18425 -0.9 -1.3 prephenate dehydrogenase compare
HSERO_RS17110 -0.9 -2.0 ribonuclease H compare
HSERO_RS20250 -0.9 -1.3 large conductance mechanosensitive channel protein MscL compare
HSERO_RS14930 -0.9 -1.1 aldolase compare
HSERO_RS21650 -0.9 -2.5 TetR family transcriptional regulator compare
HSERO_RS02630 -0.9 -2.1 membrane protein compare
HSERO_RS13655 -0.9 -3.5 hypothetical protein compare
HSERO_RS19535 -0.9 -1.1 nucleotide-binding protein compare
HSERO_RS03575 -0.9 -2.0 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS09455 -0.9 -2.3 NAD synthetase compare
HSERO_RS21420 -0.8 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
HSERO_RS05970 -0.8 -1.2 ABC transporter compare
HSERO_RS21700 -0.8 -3.4 SpoVR family protein compare
HSERO_RS00410 -0.8 -1.8 phosphoheptose isomerase compare
HSERO_RS16535 -0.8 -2.5 hypothetical protein compare
HSERO_RS11705 -0.8 -2.1 extracytoplasmic-function sigma-70 factor compare
HSERO_RS11475 -0.8 -1.4 hypothetical protein compare
HSERO_RS08000 -0.8 -2.9 metal-transporting P-type ATPase transmembrane protein compare
HSERO_RS17675 -0.8 -4.1 alpha/beta hydrolase compare
HSERO_RS01320 -0.8 -2.9 RND transporter MFP subunit compare
HSERO_RS13270 -0.8 -3.4 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS13305 -0.8 -2.8 magnesium chelatase compare
HSERO_RS13230 -0.8 -1.2 cobyric acid synthase compare
HSERO_RS19600 -0.8 -2.9 transposase compare
HSERO_RS15990 -0.8 -3.4 MarR family transcriptional regulator compare
HSERO_RS09770 -0.8 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS06165 -0.7 -3.0 ATP-dependent DNA helicase RecG compare
HSERO_RS16450 -0.7 -1.1 colicin V production protein compare
HSERO_RS09915 -0.7 -2.5 transcriptional regulator compare
HSERO_RS06230 -0.7 -3.2 heme biosynthesis protein HemY compare
HSERO_RS08015 -0.7 -1.9 MerR family transcriptional regulator compare
HSERO_RS02450 -0.7 -1.2 arsenate reductase compare
HSERO_RS15585 -0.7 -4.7 cobalamin biosynthesis protein CbiX compare
HSERO_RS14190 -0.7 -2.1 iron--sulfur cluster insertion protein ErpA compare
HSERO_RS22065 -0.7 -1.3 EpiA compare
HSERO_RS02475 -0.7 -1.5 tRNA-Gly compare
HSERO_RS03510 -0.7 -1.6 proline aminopeptidase P II compare
HSERO_RS15045 -0.7 -1.6 membrane protein compare
HSERO_RS06020 -0.7 -2.3 response regulator compare
HSERO_RS07015 -0.7 -3.1 isocitrate dehydrogenase compare
HSERO_RS21100 -0.7 -4.6 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS13255 -0.7 -1.8 cobyrinic acid a,c-diamide synthase compare
HSERO_RS08745 -0.7 -1.7 membrane protein compare
HSERO_RS13560 -0.7 -1.4 transcriptional regulator compare
HSERO_RS21765 -0.7 -2.1 cell division protein compare
HSERO_RS02035 -0.7 -2.1 phosphoglycerate mutase compare
HSERO_RS11265 -0.7 -2.1 GntR family transcriptional regulator compare
HSERO_RS05265 -0.7 -2.4 L-fucono-1,5-lactonase (from data) compare
HSERO_RS15355 -0.7 -1.8 hypothetical protein compare
HSERO_RS12440 -0.7 -2.3 universal stress protein compare
HSERO_RS11610 -0.7 -3.3 NADH dehydrogenase compare
HSERO_RS14540 -0.7 -2.0 nitrite reductase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D,L-Lactate in Herbaspirillum seropedicae SmR1

For carbon source Sodium D,L-Lactate across organisms