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Experiment set3IT028 for
Ralstonia sp. UNC404CL21Col
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no_plant_rhizosphere sample 1; outgrowth in LB
200 most important genes:
gene
name
fitness
t score
description
ABZR87
_RS21795
-5.8
-5.6
NUDIX domain-containing protein
compare
ABZR87
_RS08630
-5.6
-3.9
dihydroorotase
compare
ABZR87
_RS02595
-5.5
-9.2
shikimate kinase
compare
ABZR87
_RS02640
-5.5
-11.7
diaminopimelate decarboxylase
compare
ABZR87
_RS08695
-5.4
-15.7
capsular polysaccharide biosynthesis protein CapF
compare
ABZR87
_RS14500
-5.4
-11.5
tryptophan synthase subunit beta
compare
ABZR87
_RS20875
-5.4
-5.2
LysR family transcriptional regulator
compare
ABZR87
_RS01810
-5.2
-3.6
glutamate 5-kinase
compare
ABZR87
_RS20880
-5.2
-6.2
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
compare
ABZR87
_RS02570
-5.2
-18.8
glutamate synthase-related protein
compare
ABZR87
_RS07735
-5.1
-3.5
D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase
compare
ABZR87
_RS02160
-5.1
-6.0
indole-3-glycerol phosphate synthase TrpC
compare
ABZR87
_RS09450
-5.0
-7.7
prephenate dehydratase
compare
ABZR87
_RS22920
-5.0
-3.5
phosphogluconate dehydratase
compare
ABZR87
_RS02155
-5.0
-7.6
anthranilate phosphoribosyltransferase
compare
ABZR87
_RS02565
-4.9
-4.8
glutamate synthase subunit beta
compare
ABZR87
_RS12960
-4.8
-1.9
head completion/stabilization protein
compare
ABZR87
_RS02590
-4.7
-7.2
3-dehydroquinate synthase
compare
ABZR87
_RS05200
-4.7
-17.1
homoserine O-acetyltransferase
compare
ABZR87
_RS13790
-4.7
-6.4
chorismate synthase
compare
ABZR87
_RS07380
-4.5
-10.1
FAD/FMN-binding oxidoreductase
compare
ABZR87
_RS14535
-4.4
-4.3
3-isopropylmalate dehydratase small subunit
compare
ABZR87
_RS14505
-4.4
-4.3
phosphoribosylanthranilate isomerase
compare
ABZR87
_RS01255
-4.4
-13.8
LysR substrate-binding domain-containing protein
compare
ABZR87
_RS09465
-4.3
-5.2
3-phosphoshikimate 1-carboxyvinyltransferase
compare
ABZR87
_RS14490
-4.3
-6.6
tryptophan synthase subunit alpha
compare
ABZR87
_RS02140
-4.3
-16.6
anthranilate synthase component I
compare
ABZR87
_RS20440
-4.3
-1.7
F0F1 ATP synthase subunit epsilon
compare
ABZR87
_RS01645
-4.2
-5.8
type II 3-dehydroquinate dehydratase
compare
ABZR87
_RS02655
-4.2
-9.2
anti-sigma factor
compare
ABZR87
_RS03420
-4.1
-1.6
type II secretion system minor pseudopilin GspI
compare
ABZR87
_RS22970
-4.0
-9.6
cystathionine gamma-synthase family protein
compare
ABZR87
_RS09500
-4.0
-3.9
D-glycero-beta-D-manno-heptose-7-phosphate kinase
compare
ABZR87
_RS14115
-4.0
-3.9
ATP-dependent zinc metalloprotease FtsH
compare
ABZR87
_RS09445
-3.9
-10.2
3-phosphoserine/phosphohydroxythreonine transaminase
compare
ABZR87
_RS05305
-3.9
-11.7
TetR family transcriptional regulator
compare
ABZR87
_RS07360
-3.8
-10.5
threonine ammonia-lyase, biosynthetic
compare
ABZR87
_RS05100
-3.7
-5.1
RNA polymerase-binding protein DksA
compare
ABZR87
_RS14530
-3.7
-5.6
3-isopropylmalate dehydrogenase
compare
ABZR87
_RS08750
-3.7
-5.0
lipopolysaccharide heptosyltransferase I
compare
ABZR87
_RS01240
-3.6
-11.6
catalase/peroxidase HPI
compare
ABZR87
_RS08795
-3.6
-2.5
undecaprenyl-diphosphate phosphatase
compare
ABZR87
_RS06705
-3.6
-13.6
glutamate--cysteine ligase
compare
ABZR87
_RS08970
-3.6
-6.9
protein TolQ
compare
ABZR87
_RS02145
-3.5
-3.1
aminodeoxychorismate/anthranilate synthase component II
compare
ABZR87
_RS06845
-3.4
-10.7
heme o synthase
compare
ABZR87
_RS02385
-3.3
-5.1
ubiquinol-cytochrome c reductase iron-sulfur subunit
compare
ABZR87
_RS01225
-3.3
-3.7
YggS family pyridoxal phosphate-dependent enzyme
compare
ABZR87
_RS14540
-3.3
-4.9
3-isopropylmalate dehydratase large subunit
compare
ABZR87
_RS11790
-3.3
-2.3
cell division protein ZipA C-terminal FtsZ-binding domain-containing protein
compare
ABZR87
_RS00435
-3.3
-3.9
ATP-dependent Clp protease ATP-binding subunit ClpA
compare
ABZR87
_RS13250
-3.2
-3.1
phosphoserine phosphatase SerB
compare
ABZR87
_RS02545
-3.2
-4.9
outer membrane lipid asymmetry maintenance protein MlaD
compare
ABZR87
_RS08990
-3.2
-6.5
peptidoglycan-associated lipoprotein Pal
compare
ABZR87
_RS06495
-3.1
-2.2
D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase
compare
ABZR87
_RS09515
-3.1
-2.1
cysteine synthase CysM
compare
ABZR87
_RS17310
-3.0
-6.4
PadR family transcriptional regulator
compare
ABZR87
_RS02380
-3.0
-11.1
cytochrome bc complex cytochrome b subunit
compare
ABZR87
_RS15805
-3.0
-7.3
IclR family transcriptional regulator
compare
ABZR87
_RS09895
-3.0
-2.0
DUF1841 family protein
compare
ABZR87
_RS07050
-3.0
-1.9
PTS IIA-like nitrogen regulatory protein PtsN
compare
ABZR87
_RS19010
-3.0
-3.5
acyloxyacyl hydrolase
compare
ABZR87
_RS00185
-2.9
-4.8
uroporphyrinogen-III C-methyltransferase
compare
ABZR87
_RS04865
-2.9
-2.8
methylenetetrahydrofolate reductase [NAD(P)H]
compare
ABZR87
_RS03075
-2.9
-9.0
AGE family epimerase/isomerase
compare
ABZR87
_RS08985
-2.9
-11.0
Tol-Pal system beta propeller repeat protein TolB
compare
ABZR87
_RS22690
-2.9
-3.6
XRE family transcriptional regulator
compare
ABZR87
_RS13475
-2.8
-6.4
PAS domain S-box protein
compare
ABZR87
_RS16960
-2.8
-2.0
HAMP domain-containing sensor histidine kinase
compare
ABZR87
_RS02550
-2.8
-4.3
lipid asymmetry maintenance ABC transporter permease subunit MlaE
compare
ABZR87
_RS14375
-2.8
-2.7
fumarate hydratase
compare
ABZR87
_RS12785
-2.8
-2.7
endopeptidase La
compare
ABZR87
_RS02440
-2.8
-8.0
twin-arginine translocase subunit TatC
compare
ABZR87
_RS13285
-2.7
-10.2
polyhydroxyalkanoate synthesis repressor PhaR
compare
ABZR87
_RS02075
-2.6
-2.9
23S ribosomal RNA
compare
ABZR87
_RS11010
-2.6
-2.3
oxidative damage protection protein
compare
ABZR87
_RS10980
-2.6
-1.4
tRNA-Leu
compare
ABZR87
_RS03410
-2.6
-6.6
type II secretion system major pseudopilin GspG
compare
ABZR87
_RS02555
-2.6
-4.9
ABC transporter ATP-binding protein
compare
ABZR87
_RS16170
-2.6
-2.5
argininosuccinate lyase
compare
ABZR87
_RS08980
-2.5
-4.0
cell envelope integrity protein TolA
compare
ABZR87
_RS09505
-2.5
-5.9
ADP-glyceromanno-heptose 6-epimerase
compare
ABZR87
_RS14380
-2.5
-5.1
glutamate racemase
compare
ABZR87
_RS11125
-2.5
-6.0
cell division protein ZapE
compare
ABZR87
_RS07005
-2.5
-2.4
lipoprotein insertase outer membrane protein LolB
compare
ABZR87
_RS16735
-2.4
-10.7
Fe/S-dependent 2-methylisocitrate dehydratase AcnD
compare
ABZR87
_RS03930
-2.4
-3.0
glycine cleavage system protein GcvH
compare
ABZR87
_RS06745
-2.3
-4.2
S41 family peptidase
compare
ABZR87
_RS02535
-2.3
-4.2
phospholipid-binding protein MlaC
compare
ABZR87
_RS03565
-2.3
-5.7
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS07035
-2.3
-5.7
RNase adapter RapZ
compare
ABZR87
_RS11245
-2.3
-4.6
translational GTPase TypA
compare
ABZR87
_RS02375
-2.3
-9.2
cytochrome c1
compare
ABZR87
_RS04940
-2.3
-4.4
PAS domain-containing sensor histidine kinase
compare
ABZR87
_RS02850
-2.3
-2.2
elongation factor Tu
compare
ABZR87
_RS06840
-2.2
-6.5
COX15/CtaA family protein
compare
ABZR87
_RS05065
-2.2
-2.7
tyrosine recombinase XerC
compare
ABZR87
_RS03435
-2.2
-5.0
type II secretion system protein GspL
compare
ABZR87
_RS10170
-2.2
-5.0
RseA family anti-sigma factor
compare
ABZR87
_RS04105
-2.1
-3.8
ATP synthase subunit I
compare
ABZR87
_RS03440
-2.1
-4.7
type II secretion system protein GspM
compare
ABZR87
_RS07965
-2.1
-4.3
recombinase RecA
compare
ABZR87
_RS01605
-2.1
-7.1
shikimate dehydrogenase
compare
ABZR87
_RS11015
-2.1
-4.3
amino-acid N-acetyltransferase
compare
ABZR87
_RS05570
-2.1
-6.6
lysophospholipid acyltransferase family protein
compare
ABZR87
_RS10085
-2.1
-2.0
Rne/Rng family ribonuclease
compare
ABZR87
_RS00795
-2.1
-2.5
site-specific tyrosine recombinase XerD
compare
ABZR87
_RS08700
-2.1
-6.3
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
compare
ABZR87
_RS14190
-2.1
-10.3
DUF2589 domain-containing protein
compare
ABZR87
_RS06710
-2.1
-11.1
glutathione synthase
compare
ABZR87
_RS17980
-2.1
-6.6
CheR family methyltransferase
compare
ABZR87
_RS01615
-2.0
-1.0
RNB domain-containing ribonuclease
compare
ABZR87
_RS06350
-2.0
-7.0
thiol:disulfide interchange protein DsbA/DsbL
compare
ABZR87
_RS21950
-2.0
-5.7
hypothetical protein
compare
ABZR87
_RS09625
-2.0
-7.5
CobD/CbiB family protein
compare
ABZR87
_RS17650
-2.0
-4.8
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS11370
-2.0
-3.7
DUF47 domain-containing protein
compare
ABZR87
_RS07625
-2.0
-1.4
Holliday junction branch migration protein RuvA
compare
ABZR87
_RS09935
-2.0
-1.3
amino acid aminotransferase
compare
ABZR87
_RS01885
-2.0
-3.0
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
compare
ABZR87
_RS08640
-1.9
-4.0
symmetrical bis(5'-nucleosyl)-tetraphosphatase
compare
ABZR87
_RS03460
-1.9
-7.8
type II secretion system inner membrane protein GspF
compare
ABZR87
_RS15715
-1.9
-7.9
UTP--glucose-1-phosphate uridylyltransferase GalU
compare
ABZR87
_RS01425
-1.9
-2.9
ferric iron uptake transcriptional regulator
compare
ABZR87
_RS20690
-1.9
-1.7
recombinase-like helix-turn-helix domain-containing protein
compare
ABZR87
_RS07665
-1.9
-6.6
aminopeptidase P N-terminal domain-containing protein
compare
ABZR87
_RS12790
-1.9
-2.2
ATP-dependent Clp protease ATP-binding subunit ClpX
compare
ABZR87
_RS12780
-1.9
-1.3
HU family DNA-binding protein
compare
ABZR87
_RS03455
-1.8
-7.2
type II secretion system ATPase GspE
compare
ABZR87
_RS02220
-1.8
-7.0
redox-regulated ATPase YchF
compare
ABZR87
_RS02540
-1.8
-5.1
VacJ family lipoprotein
compare
ABZR87
_RS01110
-1.8
-6.8
3-deoxy-7-phosphoheptulonate synthase AroG
compare
ABZR87
_RS12950
-1.8
-6.2
phage major capsid protein, P2 family
compare
ABZR87
_RS00875
-1.8
-2.7
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
compare
ABZR87
_RS17960
-1.8
-6.9
chemotaxis protein CheA
compare
ABZR87
_RS07730
-1.8
-1.2
lysophospholipid acyltransferase family protein
compare
ABZR87
_RS20555
-1.7
-3.1
helix-turn-helix transcriptional regulator
compare
ABZR87
_RS12345
-1.7
-1.2
dethiobiotin synthase
compare
ABZR87
_RS09615
-1.7
-1.1
50S ribosomal protein L19
compare
ABZR87
_RS03850
-1.7
-3.9
ureidoglycolate lyase
compare
ABZR87
_RS01745
-1.7
-3.0
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
compare
ABZR87
_RS22300
-1.7
-1.2
flagellar biosynthesis anti-sigma factor FlgM
compare
ABZR87
_RS03430
-1.7
-8.8
type II secretion system minor pseudopilin GspK
compare
ABZR87
_RS11440
-1.7
-4.7
pyridoxal phosphate-dependent aminotransferase
compare
ABZR87
_RS12800
-1.7
-2.9
trigger factor
compare
ABZR87
_RS03450
-1.7
-8.6
type II secretion system secretin GspD
compare
ABZR87
_RS05205
-1.7
-4.7
methionine biosynthesis protein MetW
compare
ABZR87
_RS08625
-1.7
-1.1
aspartate carbamoyltransferase catalytic subunit
compare
ABZR87
_RS10070
-1.6
-2.4
gephyrin-like molybdotransferase Glp
compare
ABZR87
_RS22000
-1.6
-2.3
hypothetical protein
compare
ABZR87
_RS00200
-1.6
-4.3
phosphoadenylyl-sulfate reductase
compare
ABZR87
_RS15705
-1.6
-2.5
UvrD-helicase domain-containing protein
compare
ABZR87
_RS03425
-1.6
-5.5
prepilin-type N-terminal cleavage/methylation domain-containing protein
compare
ABZR87
_RS10175
-1.6
-5.2
MucB/RseB C-terminal domain-containing protein
compare
ABZR87
_RS01675
-1.6
-1.1
carbohydrate kinase family protein
compare
ABZR87
_RS21285
-1.6
-1.4
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS13805
-1.6
-3.6
CBS domain-containing protein
compare
ABZR87
_RS16730
-1.6
-4.0
2-methylaconitate cis-trans isomerase PrpF
compare
ABZR87
_RS13770
-1.6
-6.5
CoA transferase subunit A
compare
ABZR87
_RS14605
-1.5
-9.5
aconitate hydratase AcnA
compare
ABZR87
_RS14950
-1.5
-1.0
acetolactate synthase small subunit
compare
ABZR87
_RS10550
-1.5
-1.3
outer membrane protein assembly factor BamC
compare
ABZR87
_RS11815
-1.5
-7.3
[protein-PII] uridylyltransferase
compare
ABZR87
_RS14510
-1.5
-3.4
tRNA pseudouridine(38-40) synthase TruA
compare
ABZR87
_RS01275
-1.5
-4.5
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
compare
ABZR87
_RS07510
-1.5
-3.4
LysR family transcriptional regulator
compare
ABZR87
_RS10190
-1.5
-5.7
translation elongation factor 4
compare
ABZR87
_RS01085
-1.5
-2.9
rhombosortase
compare
ABZR87
_RS07470
-1.5
-4.9
TetR/AcrR family transcriptional regulator
compare
ABZR87
_RS14965
-1.5
-2.8
DUF3619 family protein
compare
ABZR87
_RS16125
-1.5
-5.3
heme biosynthesis protein HemY
compare
ABZR87
_RS13315
-1.5
-5.0
RluA family pseudouridine synthase
compare
ABZR87
_RS09955
-1.5
-5.4
LacI family DNA-binding transcriptional regulator
compare
ABZR87
_RS19020
-1.5
-8.4
multidrug efflux RND transporter permease subunit
compare
ABZR87
_RS09460
-1.5
-2.2
prephenate dehydrogenase
compare
ABZR87
_RS15680
-1.5
-6.0
DNA polymerase I
compare
ABZR87
_RS17730
-1.5
-5.3
GntR family transcriptional regulator
compare
ABZR87
_RS13415
-1.5
-2.9
IclR family transcriptional regulator
compare
ABZR87
_RS01245
-1.4
-2.2
Dps family protein
compare
ABZR87
_RS11170
-1.4
-0.8
FixH family protein
compare
ABZR87
_RS13175
-1.4
-1.4
tRNA-Leu
compare
ABZR87
_RS03865
-1.4
-6.9
GntR family transcriptional regulator
compare
ABZR87
_RS11470
-1.4
-4.1
molybdenum cofactor biosynthesis protein MoaE
compare
ABZR87
_RS10080
-1.4
-5.6
GTP 3',8-cyclase MoaA
compare
ABZR87
_RS04880
-1.4
-5.4
5-formyltetrahydrofolate cyclo-ligase
compare
ABZR87
_RS16055
-1.4
-4.0
outer membrane lipoprotein chaperone LolA
compare
ABZR87
_RS06715
-1.4
-3.3
PTS sugar transporter subunit IIA
compare
ABZR87
_RS15405
-1.4
-3.4
YebC/PmpR family DNA-binding transcriptional regulator
compare
ABZR87
_RS02325
-1.4
-2.9
cytochrome o ubiquinol oxidase subunit III
compare
ABZR87
_RS02680
-1.4
-6.2
c-type cytochrome
compare
ABZR87
_RS04725
-1.3
-0.9
universal stress protein
compare
ABZR87
_RS19050
-1.3
-3.6
glycosyltransferase family 39 protein
compare
ABZR87
_RS09710
-1.3
-1.8
tRNA-Arg
compare
ABZR87
_RS22520
-1.3
-2.1
ABATE domain-containing protein
compare
ABZR87
_RS02630
-1.3
-4.0
iron donor protein CyaY
compare
ABZR87
_RS03925
-1.3
-5.4
glycine cleavage system aminomethyltransferase GcvT
compare
ABZR87
_RS22150
-1.3
-5.2
MarR family transcriptional regulator
compare
ABZR87
_RS09940
-1.3
-6.9
excinuclease ABC subunit UvrB
compare
ABZR87
_RS00205
-1.3
-0.9
DUF934 domain-containing protein
compare
ABZR87
_RS12120
-1.3
-0.9
isocitrate lyase/phosphoenolpyruvate mutase family protein
compare
Specific Phenotypes
For 9 genes in this experiment