Experiment set3IT028 for Ralstonia sp. UNC404CL21Col

Compare to:

no_plant_rhizosphere sample 1; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -5.8 -5.6 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.6 -3.9 dihydroorotase compare
ABZR87_RS02595 -5.5 -9.2 shikimate kinase compare
ABZR87_RS02640 -5.5 -11.7 diaminopimelate decarboxylase compare
ABZR87_RS08695 -5.4 -15.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS14500 -5.4 -11.5 tryptophan synthase subunit beta compare
ABZR87_RS20875 -5.4 -5.2 LysR family transcriptional regulator compare
ABZR87_RS01810 -5.2 -3.6 glutamate 5-kinase compare
ABZR87_RS20880 -5.2 -6.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02570 -5.2 -18.8 glutamate synthase-related protein compare
ABZR87_RS07735 -5.1 -3.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02160 -5.1 -6.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS09450 -5.0 -7.7 prephenate dehydratase compare
ABZR87_RS22920 -5.0 -3.5 phosphogluconate dehydratase compare
ABZR87_RS02155 -5.0 -7.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS02565 -4.9 -4.8 glutamate synthase subunit beta compare
ABZR87_RS12960 -4.8 -1.9 head completion/stabilization protein compare
ABZR87_RS02590 -4.7 -7.2 3-dehydroquinate synthase compare
ABZR87_RS05200 -4.7 -17.1 homoserine O-acetyltransferase compare
ABZR87_RS13790 -4.7 -6.4 chorismate synthase compare
ABZR87_RS07380 -4.5 -10.1 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14535 -4.4 -4.3 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14505 -4.4 -4.3 phosphoribosylanthranilate isomerase compare
ABZR87_RS01255 -4.4 -13.8 LysR substrate-binding domain-containing protein compare
ABZR87_RS09465 -4.3 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14490 -4.3 -6.6 tryptophan synthase subunit alpha compare
ABZR87_RS02140 -4.3 -16.6 anthranilate synthase component I compare
ABZR87_RS20440 -4.3 -1.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS01645 -4.2 -5.8 type II 3-dehydroquinate dehydratase compare
ABZR87_RS02655 -4.2 -9.2 anti-sigma factor compare
ABZR87_RS03420 -4.1 -1.6 type II secretion system minor pseudopilin GspI compare
ABZR87_RS22970 -4.0 -9.6 cystathionine gamma-synthase family protein compare
ABZR87_RS09500 -4.0 -3.9 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS14115 -4.0 -3.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS09445 -3.9 -10.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS05305 -3.9 -11.7 TetR family transcriptional regulator compare
ABZR87_RS07360 -3.8 -10.5 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS05100 -3.7 -5.1 RNA polymerase-binding protein DksA compare
ABZR87_RS14530 -3.7 -5.6 3-isopropylmalate dehydrogenase compare
ABZR87_RS08750 -3.7 -5.0 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS01240 -3.6 -11.6 catalase/peroxidase HPI compare
ABZR87_RS08795 -3.6 -2.5 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS06705 -3.6 -13.6 glutamate--cysteine ligase compare
ABZR87_RS08970 -3.6 -6.9 protein TolQ compare
ABZR87_RS02145 -3.5 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS06845 -3.4 -10.7 heme o synthase compare
ABZR87_RS02385 -3.3 -5.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS01225 -3.3 -3.7 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS14540 -3.3 -4.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS11790 -3.3 -2.3 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS00435 -3.3 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS13250 -3.2 -3.1 phosphoserine phosphatase SerB compare
ABZR87_RS02545 -3.2 -4.9 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS08990 -3.2 -6.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS06495 -3.1 -2.2 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS09515 -3.1 -2.1 cysteine synthase CysM compare
ABZR87_RS17310 -3.0 -6.4 PadR family transcriptional regulator compare
ABZR87_RS02380 -3.0 -11.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS15805 -3.0 -7.3 IclR family transcriptional regulator compare
ABZR87_RS09895 -3.0 -2.0 DUF1841 family protein compare
ABZR87_RS07050 -3.0 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS19010 -3.0 -3.5 acyloxyacyl hydrolase compare
ABZR87_RS00185 -2.9 -4.8 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS04865 -2.9 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS03075 -2.9 -9.0 AGE family epimerase/isomerase compare
ABZR87_RS08985 -2.9 -11.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS22690 -2.9 -3.6 XRE family transcriptional regulator compare
ABZR87_RS13475 -2.8 -6.4 PAS domain S-box protein compare
ABZR87_RS16960 -2.8 -2.0 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02550 -2.8 -4.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS14375 -2.8 -2.7 fumarate hydratase compare
ABZR87_RS12785 -2.8 -2.7 endopeptidase La compare
ABZR87_RS02440 -2.8 -8.0 twin-arginine translocase subunit TatC compare
ABZR87_RS13285 -2.7 -10.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02075 -2.6 -2.9 23S ribosomal RNA compare
ABZR87_RS11010 -2.6 -2.3 oxidative damage protection protein compare
ABZR87_RS10980 -2.6 -1.4 tRNA-Leu compare
ABZR87_RS03410 -2.6 -6.6 type II secretion system major pseudopilin GspG compare
ABZR87_RS02555 -2.6 -4.9 ABC transporter ATP-binding protein compare
ABZR87_RS16170 -2.6 -2.5 argininosuccinate lyase compare
ABZR87_RS08980 -2.5 -4.0 cell envelope integrity protein TolA compare
ABZR87_RS09505 -2.5 -5.9 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS14380 -2.5 -5.1 glutamate racemase compare
ABZR87_RS11125 -2.5 -6.0 cell division protein ZapE compare
ABZR87_RS07005 -2.5 -2.4 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS16735 -2.4 -10.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS03930 -2.4 -3.0 glycine cleavage system protein GcvH compare
ABZR87_RS06745 -2.3 -4.2 S41 family peptidase compare
ABZR87_RS02535 -2.3 -4.2 phospholipid-binding protein MlaC compare
ABZR87_RS03565 -2.3 -5.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07035 -2.3 -5.7 RNase adapter RapZ compare
ABZR87_RS11245 -2.3 -4.6 translational GTPase TypA compare
ABZR87_RS02375 -2.3 -9.2 cytochrome c1 compare
ABZR87_RS04940 -2.3 -4.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS02850 -2.3 -2.2 elongation factor Tu compare
ABZR87_RS06840 -2.2 -6.5 COX15/CtaA family protein compare
ABZR87_RS05065 -2.2 -2.7 tyrosine recombinase XerC compare
ABZR87_RS03435 -2.2 -5.0 type II secretion system protein GspL compare
ABZR87_RS10170 -2.2 -5.0 RseA family anti-sigma factor compare
ABZR87_RS04105 -2.1 -3.8 ATP synthase subunit I compare
ABZR87_RS03440 -2.1 -4.7 type II secretion system protein GspM compare
ABZR87_RS07965 -2.1 -4.3 recombinase RecA compare
ABZR87_RS01605 -2.1 -7.1 shikimate dehydrogenase compare
ABZR87_RS11015 -2.1 -4.3 amino-acid N-acetyltransferase compare
ABZR87_RS05570 -2.1 -6.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS10085 -2.1 -2.0 Rne/Rng family ribonuclease compare
ABZR87_RS00795 -2.1 -2.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS08700 -2.1 -6.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS14190 -2.1 -10.3 DUF2589 domain-containing protein compare
ABZR87_RS06710 -2.1 -11.1 glutathione synthase compare
ABZR87_RS17980 -2.1 -6.6 CheR family methyltransferase compare
ABZR87_RS01615 -2.0 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS06350 -2.0 -7.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS21950 -2.0 -5.7 hypothetical protein compare
ABZR87_RS09625 -2.0 -7.5 CobD/CbiB family protein compare
ABZR87_RS17650 -2.0 -4.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11370 -2.0 -3.7 DUF47 domain-containing protein compare
ABZR87_RS07625 -2.0 -1.4 Holliday junction branch migration protein RuvA compare
ABZR87_RS09935 -2.0 -1.3 amino acid aminotransferase compare
ABZR87_RS01885 -2.0 -3.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS08640 -1.9 -4.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS03460 -1.9 -7.8 type II secretion system inner membrane protein GspF compare
ABZR87_RS15715 -1.9 -7.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS01425 -1.9 -2.9 ferric iron uptake transcriptional regulator compare
ABZR87_RS20690 -1.9 -1.7 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS07665 -1.9 -6.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS12790 -1.9 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS12780 -1.9 -1.3 HU family DNA-binding protein compare
ABZR87_RS03455 -1.8 -7.2 type II secretion system ATPase GspE compare
ABZR87_RS02220 -1.8 -7.0 redox-regulated ATPase YchF compare
ABZR87_RS02540 -1.8 -5.1 VacJ family lipoprotein compare
ABZR87_RS01110 -1.8 -6.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS12950 -1.8 -6.2 phage major capsid protein, P2 family compare
ABZR87_RS00875 -1.8 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS17960 -1.8 -6.9 chemotaxis protein CheA compare
ABZR87_RS07730 -1.8 -1.2 lysophospholipid acyltransferase family protein compare
ABZR87_RS20555 -1.7 -3.1 helix-turn-helix transcriptional regulator compare
ABZR87_RS12345 -1.7 -1.2 dethiobiotin synthase compare
ABZR87_RS09615 -1.7 -1.1 50S ribosomal protein L19 compare
ABZR87_RS03850 -1.7 -3.9 ureidoglycolate lyase compare
ABZR87_RS01745 -1.7 -3.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS22300 -1.7 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS03430 -1.7 -8.8 type II secretion system minor pseudopilin GspK compare
ABZR87_RS11440 -1.7 -4.7 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS12800 -1.7 -2.9 trigger factor compare
ABZR87_RS03450 -1.7 -8.6 type II secretion system secretin GspD compare
ABZR87_RS05205 -1.7 -4.7 methionine biosynthesis protein MetW compare
ABZR87_RS08625 -1.7 -1.1 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS10070 -1.6 -2.4 gephyrin-like molybdotransferase Glp compare
ABZR87_RS22000 -1.6 -2.3 hypothetical protein compare
ABZR87_RS00200 -1.6 -4.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS15705 -1.6 -2.5 UvrD-helicase domain-containing protein compare
ABZR87_RS03425 -1.6 -5.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS10175 -1.6 -5.2 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01675 -1.6 -1.1 carbohydrate kinase family protein compare
ABZR87_RS21285 -1.6 -1.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13805 -1.6 -3.6 CBS domain-containing protein compare
ABZR87_RS16730 -1.6 -4.0 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS13770 -1.6 -6.5 CoA transferase subunit A compare
ABZR87_RS14605 -1.5 -9.5 aconitate hydratase AcnA compare
ABZR87_RS14950 -1.5 -1.0 acetolactate synthase small subunit compare
ABZR87_RS10550 -1.5 -1.3 outer membrane protein assembly factor BamC compare
ABZR87_RS11815 -1.5 -7.3 [protein-PII] uridylyltransferase compare
ABZR87_RS14510 -1.5 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS01275 -1.5 -4.5 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS07510 -1.5 -3.4 LysR family transcriptional regulator compare
ABZR87_RS10190 -1.5 -5.7 translation elongation factor 4 compare
ABZR87_RS01085 -1.5 -2.9 rhombosortase compare
ABZR87_RS07470 -1.5 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14965 -1.5 -2.8 DUF3619 family protein compare
ABZR87_RS16125 -1.5 -5.3 heme biosynthesis protein HemY compare
ABZR87_RS13315 -1.5 -5.0 RluA family pseudouridine synthase compare
ABZR87_RS09955 -1.5 -5.4 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS19020 -1.5 -8.4 multidrug efflux RND transporter permease subunit compare
ABZR87_RS09460 -1.5 -2.2 prephenate dehydrogenase compare
ABZR87_RS15680 -1.5 -6.0 DNA polymerase I compare
ABZR87_RS17730 -1.5 -5.3 GntR family transcriptional regulator compare
ABZR87_RS13415 -1.5 -2.9 IclR family transcriptional regulator compare
ABZR87_RS01245 -1.4 -2.2 Dps family protein compare
ABZR87_RS11170 -1.4 -0.8 FixH family protein compare
ABZR87_RS13175 -1.4 -1.4 tRNA-Leu compare
ABZR87_RS03865 -1.4 -6.9 GntR family transcriptional regulator compare
ABZR87_RS11470 -1.4 -4.1 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS10080 -1.4 -5.6 GTP 3',8-cyclase MoaA compare
ABZR87_RS04880 -1.4 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS16055 -1.4 -4.0 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS06715 -1.4 -3.3 PTS sugar transporter subunit IIA compare
ABZR87_RS15405 -1.4 -3.4 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS02325 -1.4 -2.9 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS02680 -1.4 -6.2 c-type cytochrome compare
ABZR87_RS04725 -1.3 -0.9 universal stress protein compare
ABZR87_RS19050 -1.3 -3.6 glycosyltransferase family 39 protein compare
ABZR87_RS09710 -1.3 -1.8 tRNA-Arg compare
ABZR87_RS22520 -1.3 -2.1 ABATE domain-containing protein compare
ABZR87_RS02630 -1.3 -4.0 iron donor protein CyaY compare
ABZR87_RS03925 -1.3 -5.4 glycine cleavage system aminomethyltransferase GcvT compare
ABZR87_RS22150 -1.3 -5.2 MarR family transcriptional regulator compare
ABZR87_RS09940 -1.3 -6.9 excinuclease ABC subunit UvrB compare
ABZR87_RS00205 -1.3 -0.9 DUF934 domain-containing protein compare
ABZR87_RS12120 -1.3 -0.9 isocitrate lyase/phosphoenolpyruvate mutase family protein compare


Specific Phenotypes

For 9 genes in this experiment