Experiment set3IT027 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Choline Lysine 6 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2621 -2.6 -2.5 PspA/IM30 family protein compare
Pf1N1B4_430 -2.2 -2.4 hypothetical protein compare
Pf1N1B4_2106 -2.2 -2.9 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3168 -2.2 -3.8 AmpG permease compare
Pf1N1B4_3997 -2.1 -5.3 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1008 -2.0 -1.9 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_5827 -2.0 -4.0 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_2004 -1.9 -2.6 putative membrane protein compare
Pf1N1B4_3866 -1.8 -2.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_2359 -1.7 -3.4 Chemotaxis signal transduction protein compare
Pf1N1B4_324 -1.7 -2.9 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4460 -1.7 -2.1 Cytochrome b561 compare
Pf1N1B4_3779 -1.7 -2.9 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_875 -1.7 -2.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2885 -1.7 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_4563 -1.7 -2.5 Sulfate transporter compare
Pf1N1B4_1749 -1.7 -1.9 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2791 -1.6 -2.4 Putative inner membrane protein (Fragment) compare
Pf1N1B4_1307 -1.6 -2.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3143 -1.6 -3.1 RecA protein compare
Pf1N1B4_3466 -1.6 -2.9 FIG00955605: hypothetical protein compare
Pf1N1B4_1837 -1.6 -1.8 Osmotically inducible protein C compare
Pf1N1B4_2949 -1.6 -1.7 FIG00956396: hypothetical protein compare
Pf1N1B4_124 -1.5 -2.4 Mechanosensitive ion channel compare
Pf1N1B4_866 -1.5 -2.0 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1870 -1.5 -2.9 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_2874 -1.5 -1.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2105 -1.5 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2886 -1.5 -8.3 Paraquat-inducible protein B compare
Pf1N1B4_4335 -1.5 -2.7 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_769 -1.5 -5.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2284 -1.4 -4.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2244 -1.4 -2.6 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_5939 -1.4 -3.2 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_1691 -1.4 -1.7 hypothetical protein compare
Pf1N1B4_2208 -1.4 -5.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_4668 -1.4 -3.6 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_2048 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_1463 -1.4 -6.2 hypothetical protein compare
Pf1N1B4_2453 -1.4 -2.2 hypothetical protein compare
Pf1N1B4_1211 -1.4 -4.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1617 -1.4 -6.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3559 -1.3 -8.0 Aromatic amino acid transport protein AroP compare
Pf1N1B4_4256 -1.3 -2.4 Probable transmembrane protein compare
Pf1N1B4_4669 -1.3 -1.5 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_4253 -1.3 -2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3965 -1.3 -2.1 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_1317 -1.3 -2.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_4699 -1.3 -2.8 Multidrug translocase MdfA compare
Pf1N1B4_3364 -1.3 -2.9 Cyn operon transcriptional activator compare
Pf1N1B4_239 -1.3 -3.2 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_1060 -1.3 -2.4 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_2912 -1.3 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_5822 -1.3 -4.8 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B compare
Pf1N1B4_1844 -1.3 -7.9 Oligopeptidase A (EC 3.4.24.70) compare
Pf1N1B4_2150 -1.2 -2.3 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_3998 -1.2 -2.4 putative exported protein compare
Pf1N1B4_3325 -1.2 -1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_4632 -1.2 -2.9 Exonuclease SbcC compare
Pf1N1B4_1330 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_2322 -1.2 -1.7 FIG015547: peptidase, M16 family compare
Pf1N1B4_722 -1.2 -1.9 SAM-dependent methyltransferases compare
Pf1N1B4_3864 -1.2 -5.2 Recombination protein RecR compare
Pf1N1B4_507 -1.2 -1.8 FIG00956448: hypothetical protein compare
Pf1N1B4_3885 -1.1 -3.6 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_474 -1.1 -4.0 FIG00954461: hypothetical protein compare
Pf1N1B4_1827 -1.1 -2.9 FIG00953482: hypothetical protein compare
Pf1N1B4_3467 -1.1 -2.4 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_3980 -1.1 -2.4 Transcriptional regulator, HxlR family compare
Pf1N1B4_2421 -1.1 -2.3 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_3782 -1.1 -2.0 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_5552 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_1328 -1.1 -1.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_5095 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_345 -1.1 -1.5 Integration host factor beta subunit compare
Pf1N1B4_1654 -1.1 -3.0 hypothetical protein compare
Pf1N1B4_3396 -1.1 -2.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_419 -1.1 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_846 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_4533 -1.1 -2.4 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_5834 -1.1 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_3073 -1.1 -4.0 probable glucosyl transferase compare
Pf1N1B4_5995 -1.1 -1.7 Transporter, MFS superfamily compare
Pf1N1B4_1637 -1.1 -2.0 FIG00954739: hypothetical protein compare
Pf1N1B4_4873 -1.0 -3.2 clavaldehyde dehydrogenase compare
Pf1N1B4_3246 -1.0 -2.9 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_378 -1.0 -3.0 Carbon storage regulator compare
Pf1N1B4_2223 -1.0 -3.8 FIG006231: RNA-binding protein compare
Pf1N1B4_2884 -1.0 -3.3 Paraquat-inducible protein A compare
Pf1N1B4_1780 -1.0 -2.0 FIG00961586: hypothetical protein compare
Pf1N1B4_4518 -1.0 -2.1 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_680 -1.0 -3.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Pf1N1B4_2029 -1.0 -1.9 FIG00953722: hypothetical protein compare
Pf1N1B4_4860 -1.0 -2.0 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_1781 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_5074 -1.0 -1.1 Gluconate permease compare
Pf1N1B4_2005 -1.0 -1.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1236 -1.0 -3.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_3468 -1.0 -1.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_5823 -1.0 -1.3 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_2224 -1.0 -1.7 FIG00953390: hypothetical protein compare
Pf1N1B4_1366 -1.0 -1.5 FMN-dependent NADH-azoreductase compare
Pf1N1B4_899 -1.0 -1.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_1461 -1.0 -2.1 Protein fixF compare
Pf1N1B4_2458 -0.9 -1.7 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_1946 -0.9 -3.0 Transcriptional regulator of glmS gene, DeoR family compare
Pf1N1B4_5102 -0.9 -3.7 Putative glutathione transporter, permease component compare
Pf1N1B4_2474 -0.9 -2.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5284 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_1743 -0.9 -3.3 Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-) compare
Pf1N1B4_5010 -0.9 -3.9 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Pf1N1B4_4969 -0.9 -1.8 FIG00956189: hypothetical protein compare
Pf1N1B4_883 -0.9 -1.5 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2713 -0.9 -1.5 FIG00955339: hypothetical protein compare
Pf1N1B4_4388 -0.9 -1.8 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_5371 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_5349 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_814 -0.9 -1.2 Transcriptional regulator, PadR family compare
Pf1N1B4_1762 -0.9 -2.3 FIG00957387: hypothetical protein compare
Pf1N1B4_574 -0.9 -2.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_4765 -0.9 -1.5 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_4540 -0.9 -1.4 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_2232 -0.9 -3.0 Ferric iron ABC transporter, iron-binding protein compare
Pf1N1B4_2415 -0.9 -2.2 TldD family protein, Beta/Gamma-proteobacterial subgroup compare
Pf1N1B4_5463 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_2959 -0.8 -3.0 FIG067310: hypothetical protein compare
Pf1N1B4_5513 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_716 -0.8 -2.2 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_4362 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_309 -0.8 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4830 -0.8 -1.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_5722 -0.8 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_693 -0.8 -2.6 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_1708 -0.8 -2.2 Efflux transporter, RND family, MFP subunit compare
Pf1N1B4_3259 -0.8 -2.6 FIG00956006: hypothetical protein compare
Pf1N1B4_5804 -0.8 -1.4 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_5884 -0.8 -1.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_3657 -0.8 -2.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3518 -0.8 -1.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2339 -0.8 -0.9 COG1872 compare
Pf1N1B4_193 -0.8 -2.8 Transporter, LysE family compare
Pf1N1B4_4874 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_237 -0.8 -2.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_4603 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5043 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_4325 -0.8 -2.6 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_2611 -0.8 -5.7 Excinuclease ABC subunit A compare
Pf1N1B4_184 -0.8 -2.1 Chromosome initiation inhibitor compare
Pf1N1B4_2674 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_3966 -0.8 -1.4 serine/threonine protein kinase compare
Pf1N1B4_2739 -0.8 -1.4 acetyltransferase, GNAT family compare
Pf1N1B4_886 -0.8 -1.4 FIG137478: Hypothetical protein compare
Pf1N1B4_72 -0.8 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_5333 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_1340 -0.8 -1.4 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_5763 -0.8 -1.7 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_1300 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_3191 -0.8 -1.2 FIG00953505: hypothetical protein compare
Pf1N1B4_3129 -0.8 -1.2 Prophage baseplate assembly protein V compare
Pf1N1B4_1927 -0.8 -4.1 DNA recombination and repair protein RecF compare
Pf1N1B4_1234 -0.8 -2.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4422 -0.8 -1.3 ABC transporter amino acid-binding protein compare
Pf1N1B4_5509 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3353 -0.8 -2.3 putative cytoplasmic protein compare
Pf1N1B4_1500 -0.8 -1.8 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_4761 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_5817 -0.8 -1.6 Decarboxylase family protein compare
Pf1N1B4_4928 -0.7 -2.7 Ferredoxin reductase compare
Pf1N1B4_1402 -0.7 -1.8 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_2102 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_5663 -0.7 -1.4 Periplasmic sugar-binding domain protein compare
Pf1N1B4_4437 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1874 -0.7 -1.8 FIG00953549: hypothetical protein compare
Pf1N1B4_3463 -0.7 -3.5 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_1544 -0.7 -3.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1115 -0.7 -4.8 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_2456 -0.7 -1.8 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_3011 -0.7 -1.5 Tyrosine recombinase XerD compare
Pf1N1B4_1336 -0.7 -0.7 Putative multicopper oxidases compare
Pf1N1B4_5973 -0.7 -1.6 Probable permease of ABC transporter compare
Pf1N1B4_2412 -0.7 -2.0 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_3312 -0.7 -2.2 Tricarboxylate transport protein TctB compare
Pf1N1B4_4285 -0.7 -1.8 Inositol transport system sugar-binding protein compare
Pf1N1B4_2269 -0.7 -1.5 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_3917 -0.7 -2.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3942 -0.7 -2.5 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_1 -0.7 -1.4 Colicin V production protein compare
Pf1N1B4_3783 -0.7 -1.7 FIG00958237: hypothetical protein compare
Pf1N1B4_2888 -0.7 -2.1 FIG00961017: hypothetical protein compare
Pf1N1B4_4083 -0.7 -1.6 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_2867 -0.7 -2.4 Hemin ABC transporter, permease protein compare
Pf1N1B4_3329 -0.7 -3.4 Putative permease PerM (= YfgO) compare
Pf1N1B4_163 -0.7 -2.1 ADP-ribosylglycohydrolase compare
Pf1N1B4_3536 -0.7 -2.3 SelT/selW/selH selenoprotein domain compare
Pf1N1B4_5996 -0.7 -2.7 Transposase compare
Pf1N1B4_2042 -0.7 -3.3 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_5149 -0.7 -2.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_1492 -0.7 -0.9 FIG00959437: hypothetical protein compare
Pf1N1B4_3211 -0.7 -2.0 Putative signal peptide protein compare
Pf1N1B4_5321 -0.7 -2.4 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Choline Lysine in Pseudomonas fluorescens FW300-N1B4

For stress Choline Lysine across organisms