Experiment set3IT027 for Herbaspirillum seropedicae SmR1
D-Mannitol carbon source
Group: carbon sourceMedia: NFbHP_noCarbon + D-Mannitol (5 g/L), pH=6.5
Culturing: HerbieS_ML4, flask, Aerobic, at 30 (C), shaken=120 rpm
Growth: about 5.4 generations
By: Thalita Tuleski on 19-May-16
Specific Phenotypes
For 5 genes in this experiment
For carbon source D-Mannitol in Herbaspirillum seropedicae SmR1
For carbon source D-Mannitol across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization | 5 |
| Xylose utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| xylitol degradation I | 2 | 2 | 1 |
| D-arabinitol degradation I | 2 | 2 | 1 |
| D-xylose degradation I | 2 | 1 | 1 |
| superpathway of glucose and xylose degradation | 17 | 14 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 19 | 1 |