Experiment set3IT027 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium nitrite nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.9 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS30655 -6.6 -4.5 LysR family transcriptional regulator compare
RR42_RS14365 -6.5 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS19005 -6.4 -4.4 3-dehydroquinate synthase compare
RR42_RS16280 -6.4 -9.7 transcriptional regulator compare
RR42_RS16250 -6.2 -4.3 sulfate adenylyltransferase compare
RR42_RS14390 -6.0 -4.1 3-isopropylmalate dehydratase compare
RR42_RS05860 -6.0 -5.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16255 -5.9 -8.1 sulfate adenylyltransferase compare
RR42_RS18850 -5.8 -4.0 preprotein translocase subunit TatC compare
RR42_RS06485 -5.6 -8.6 chorismate synthase compare
RR42_RS02500 -5.5 -3.7 TetR family transcriptional regulator compare
RR42_RS01160 -5.4 -9.1 homoserine O-acetyltransferase compare
RR42_RS17720 -5.4 -3.7 sugar kinase compare
RR42_RS14400 -5.2 -5.1 isopropylmalate isomerase compare
RR42_RS16270 -5.2 -9.4 sulfite reductase compare
RR42_RS18295 -5.1 -11.9 anthranilate synthase component I compare
RR42_RS21220 -4.9 -3.4 iron transporter FeoB compare
RR42_RS18300 -4.9 -6.4 anthranilate synthase subunit II compare
RR42_RS04475 -4.8 -9.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS02320 -4.8 -7.2 trehalose phosphatase compare
RR42_RS12980 -4.8 -7.0 chemotaxis protein CheY compare
RR42_RS01775 -4.6 -7.3 glutamate--cysteine ligase compare
RR42_RS01385 -4.6 -5.4 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14385 -4.6 -7.0 3-isopropylmalate dehydrogenase compare
RR42_RS16275 -4.6 -4.5 membrane protein compare
RR42_RS14320 -4.6 -5.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS15890 -4.4 -7.0 heme biosynthesis protein HemY compare
RR42_RS21280 -4.4 -9.3 L-lactate permease compare
RR42_RS33240 -4.4 -16.0 GDP-L-fucose synthase compare
RR42_RS07605 -4.4 -6.0 poly-beta-hydroxybutyrate polymerase compare
RR42_RS19885 -4.4 -3.0 aminoglycoside transporter compare
RR42_RS01960 -4.4 -6.6 transcriptional regulator conserved
RR42_RS15905 -4.4 -11.6 phosphoenolpyruvate carboxylase compare
RR42_RS33260 -4.3 -9.2 multidrug MFS transporter compare
RR42_RS33250 -4.3 -9.6 tyrosine protein kinase compare
RR42_RS33255 -4.3 -2.6 protein-tyrosine phosphatase compare
RR42_RS19010 -4.3 -8.6 shikimate kinase compare
RR42_RS02705 -4.2 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS17180 -4.2 -9.3 hypothetical protein compare
RR42_RS17105 -4.2 -12.5 Clp protease ClpX compare
RR42_RS11885 -4.1 -9.5 (protein-PII) uridylyltransferase compare
RR42_RS07380 -4.1 -4.8 dihydrolipoamide dehydrogenase compare
RR42_RS06095 -3.9 -6.5 hypothetical protein compare
RR42_RS15415 -3.9 -3.8 membrane protein compare
RR42_RS12985 -3.9 -7.9 histidine kinase compare
RR42_RS18990 -3.9 -17.0 glutamate synthase compare
RR42_RS12050 -3.8 -7.3 DNA polymerase compare
RR42_RS01845 -3.8 -2.3 glycerol-3-phosphate dehydrogenase compare
RR42_RS19065 -3.8 -9.9 transcriptional regulator compare
RR42_RS17060 -3.7 -18.2 histidine kinase compare
RR42_RS17645 -3.7 -6.1 shikimate dehydrogenase compare
RR42_RS04895 -3.7 -12.9 serine/threonine protein phosphatase compare
RR42_RS11795 -3.7 -2.6 PEP synthetase regulatory protein compare
RR42_RS14790 -3.6 -8.5 cobalamin biosynthesis protein CobD compare
RR42_RS30660 -3.6 -7.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS04470 -3.6 -6.7 prephenate dehydrogenase compare
RR42_RS18855 -3.6 -3.5 preprotein translocase compare
RR42_RS31780 -3.6 -14.1 MFS transporter compare
RR42_RS01780 -3.5 -8.8 glutathione synthetase compare
RR42_RS04535 -3.5 -5.0 cysteine synthase compare
RR42_RS33245 -3.5 -8.1 mannose-1-phosphate guanyltransferase compare
RR42_RS05990 -3.5 -9.2 aromatic amino acid aminotransferase compare
RR42_RS33235 -3.5 -8.8 GDP-mannose 4,6-dehydratase compare
RR42_RS30640 -3.5 -10.2 DNA mismatch repair protein MutT compare
RR42_RS15410 -3.5 -5.0 membrane protein compare
RR42_RS11790 -3.4 -7.8 phosphoenolpyruvate synthase compare
RR42_RS18985 -3.4 -7.2 glutamate synthase compare
RR42_RS31785 -3.4 -9.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
RR42_RS15895 -3.3 -5.2 uroporphyrinogen III methyltransferase compare
RR42_RS12040 -3.3 -13.6 MFS transporter compare
RR42_RS24605 -3.3 -7.0 TetR family transcriptional regulator compare
RR42_RS07365 -3.3 -3.1 pyruvate dehydrogenase compare
RR42_RS02085 -3.3 -7.1 RNA polymerase subunit sigma-54 compare
RR42_RS21300 -3.2 -7.0 GntR family transcriptional regulator compare
RR42_RS06630 -3.2 -3.2 integration host factor subunit alpha compare
RR42_RS14360 -3.2 -1.7 tryptophan synthase subunit alpha compare
RR42_RS33210 -3.2 -5.5 teichoic acid biosynthesis protein compare
RR42_RS16245 -3.2 -4.1 uroporphyrin-III methyltransferase compare
RR42_RS17055 -3.2 -7.0 LuxR family transcriptional regulator compare
RR42_RS21285 -3.2 -7.3 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS17565 -3.1 -15.9 LysR family transcriptional regulator compare
RR42_RS02045 -3.0 -12.5 GTPase compare
RR42_RS18270 -3.0 -5.0 murein transglycosylase compare
RR42_RS12550 -3.0 -5.6 hypothetical protein compare
RR42_RS03940 -2.9 -2.8 membrane protein compare
RR42_RS16945 -2.9 -6.7 NAD-dependent dehydratase compare
RR42_RS25785 -2.9 -4.5 TetR family transcriptional regulator compare
RR42_RS21295 -2.8 -3.5 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS25200 -2.8 -6.7 TetR family transcriptional regulator compare
RR42_RS19090 -2.8 -1.8 cytochrome C compare
RR42_RS18815 -2.7 -6.8 cytochrome C compare
RR42_RS01290 -2.7 -5.1 thiamine biosynthesis protein ThiC compare
RR42_RS07615 -2.7 -2.7 3-ketoacyl-ACP reductase compare
RR42_RS04460 -2.7 -4.3 chorismate mutase compare
RR42_RS21290 -2.6 -6.5 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS01915 -2.6 -6.2 cytochrome C oxidase subunit I compare
RR42_RS35875 -2.6 -10.9 UDP-galactose-4-epimerase compare
RR42_RS17560 -2.6 -5.7 Fur family transcriptional regulator compare
RR42_RS33575 -2.6 -2.8 hypothetical protein compare
RR42_RS12925 -2.5 -3.6 ATPase compare
RR42_RS33355 -2.5 -6.1 membrane protein compare
RR42_RS33215 -2.4 -12.6 transferase compare
RR42_RS37400 -2.4 -1.4 6-phosphogluconolactonase compare
RR42_RS16240 -2.4 -1.3 cobalamin biosynthesis protein CbiX compare
RR42_RS00115 -2.4 -3.1 hypothetical protein compare
RR42_RS33195 -2.4 -11.8 UDP-sugar lipid carrier transferase compare
RR42_RS20205 -2.3 -3.6 chromosome partitioning protein compare
RR42_RS12615 -2.3 -3.7 LexA family transcriptional regulator compare
RR42_RS13910 -2.3 -8.3 glutamate racemase compare
RR42_RS07620 -2.2 -4.5 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS01895 -2.2 -5.9 MFS transporter compare
RR42_RS01875 -2.2 -4.1 cytochrome C oxidase subunit II compare
RR42_RS07360 -2.1 -3.9 ATPase compare
RR42_RS01380 -2.1 -2.0 membrane protein compare
RR42_RS31790 -2.1 -1.5 nitrite reductase compare
RR42_RS01885 -2.1 -5.5 cytochrome C oxidase assembly protein compare
RR42_RS12860 -2.1 -3.1 pseudouridine synthase compare
RR42_RS18820 -2.1 -7.2 cytochrome B compare
RR42_RS31530 -2.0 -3.8 histidine kinase compare
RR42_RS04700 -2.0 -1.4 ribonuclease G compare
RR42_RS04320 -2.0 -4.9 cell division protein FtsK compare
RR42_RS03095 -2.0 -2.0 succinyl-CoA synthetase subunit beta compare
RR42_RS14965 -1.9 -4.9 hypothetical protein compare
RR42_RS02595 -1.9 -9.4 glutamine amidotransferase compare
RR42_RS03080 -1.9 -3.5 recombinase RecA compare
RR42_RS01720 -1.8 -2.5 membrane protein compare
RR42_RS14220 -1.8 -3.0 ferredoxin-NADP reductase compare
RR42_RS26235 -1.8 -7.1 GntR family transcriptional regulator compare
RR42_RS00410 -1.8 -4.8 transcriptional regulator compare
RR42_RS37330 -1.8 -7.1 1,4-D-glucanase compare
RR42_RS18805 -1.8 -4.4 peptidase compare
RR42_RS05920 -1.7 -3.6 HrcA family transcriptional regulator compare
RR42_RS02060 -1.7 -9.3 nucleotide-binding protein compare
RR42_RS13515 -1.7 -5.5 membrane protein compare
RR42_RS01920 -1.7 -3.2 protoheme IX farnesyltransferase compare
RR42_RS34650 -1.7 -4.2 LacI family transcriptional regulator compare
RR42_RS01940 -1.7 -11.5 glycosyl transferase conserved
RR42_RS05420 -1.7 -6.9 membrane protein compare
RR42_RS07575 -1.7 -2.8 hypothetical protein compare
RR42_RS31710 -1.6 -8.8 HxlR family transcriptional regulator compare
RR42_RS00790 -1.6 -6.4 chemotaxis protein CheY compare
RR42_RS24040 -1.6 -5.0 hypothetical protein compare
RR42_RS17235 -1.6 -4.6 poly(A) polymerase compare
RR42_RS15640 -1.6 -1.7 hypothetical protein compare
RR42_RS22890 -1.6 -6.1 TetR family transcriptional regulator compare
RR42_RS17880 -1.6 -1.3 hypothetical protein compare
RR42_RS17300 -1.6 -6.7 D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) compare
RR42_RS08365 -1.5 -7.2 hypothetical protein compare
RR42_RS23515 -1.5 -4.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS05465 -1.5 -10.1 2-isopropylmalate synthase compare
RR42_RS15465 -1.5 -2.4 TonB-dependent receptor compare
RR42_RS14055 -1.5 -2.5 elongation factor 4 compare
RR42_RS18825 -1.5 -1.8 ubiquinol-cytochrome C reductase compare
RR42_RS26540 -1.4 -1.4 3-phosphoglycerate dehydrogenase compare
RR42_RS09060 -1.4 -2.5 glucose-6-phosphate isomerase compare
RR42_RS17305 -1.4 -7.3 ion transporter compare
RR42_RS20440 -1.4 -2.0 histidine kinase compare
RR42_RS15420 -1.4 -1.4 hypothetical protein compare
RR42_RS17685 -1.4 -6.1 alkyl hydroperoxide reductase compare
RR42_RS16260 -1.4 -0.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS24980 -1.4 -1.6 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS18670 -1.4 -3.9 metal-dependent hydrolase compare
RR42_RS21790 -1.4 -3.0 short-chain dehydrogenase compare
RR42_RS15050 -1.4 -5.4 DNA polymerase I compare
RR42_RS01905 -1.4 -3.4 cytochrome C oxidase subunit II compare
RR42_RS27735 -1.4 -7.0 GntR family transcriptional regulator compare
RR42_RS05415 -1.4 -4.6 membrane protein compare
RR42_RS09100 -1.4 -6.2 transcriptional regulator compare
RR42_RS02750 -1.4 -6.6 mannose-1-phosphate guanylyltransferase compare
RR42_RS05665 -1.3 -1.4 urease accessory protein UreJ compare
RR42_RS01880 -1.3 -5.5 cytochrome oxidase subunit I compare
RR42_RS15470 -1.3 -2.2 biopolymer transporter ExbD compare
RR42_RS33650 -1.3 -2.3 IclR family transcriptional regulator compare
RR42_RS07565 -1.3 -5.9 transcription accessory protein compare
RR42_RS05955 -1.3 -1.1 hypothetical protein compare
RR42_RS15090 -1.3 -3.1 DNA helicase compare
RR42_RS17390 -1.3 -5.9 ATP-dependent DNA helicase RecG compare
RR42_RS20790 -1.3 -2.0 isoprenylcysteine carboxyl methyltransferase compare
RR42_RS19695 -1.3 -2.4 cytochrome C protein compare
RR42_RS15720 -1.3 -4.8 hypothetical protein compare
RR42_RS07590 -1.3 -5.0 pseudouridine synthase compare
RR42_RS15475 -1.3 -5.0 protein tolQ compare
RR42_RS21150 -1.3 -1.9 hypothetical protein compare
RR42_RS04890 -1.3 -3.0 ribonuclease PH compare
RR42_RS17290 -1.3 -5.5 LysR family transcriptional regulator compare
RR42_RS23685 -1.3 -5.9 transcriptional regulator compare
RR42_RS01910 -1.2 -5.5 cytochrome C oxidase subunit I compare
RR42_RS06890 -1.2 -1.3 hypothetical protein compare
RR42_RS07425 -1.2 -4.6 IclR family transcriptional regulator compare
RR42_RS29315 -1.2 -7.5 AcrR family transcriptional regulator compare
RR42_RS13620 -1.2 -1.3 ferredoxin compare
RR42_RS02535 -1.2 -6.1 metal ABC transporter permease compare
RR42_RS13800 -1.2 -5.6 formyltetrahydrofolate deformylase compare
RR42_RS25530 -1.2 -4.2 TetR family transcriptional regulator compare
RR42_RS03170 -1.2 -4.4 hypothetical protein compare
RR42_RS30185 -1.2 -3.1 TetR family transcriptional regulator compare
RR42_RS02250 -1.2 -2.1 GntR family transcriptional regulator compare
RR42_RS15015 -1.2 -1.2 exodeoxyribonuclease VII small subunit compare


Specific Phenotypes

For 15 genes in this experiment

For nitrogen source Sodium nitrite in Cupriavidus basilensis FW507-4G11

For nitrogen source Sodium nitrite across organisms