Experiment set3IT027 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 9; outgrowth in LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS21795 -7.0 -4.8 NUDIX domain-containing protein compare
ABZR87_RS08630 -5.7 -7.8 dihydroorotase compare
ABZR87_RS14115 -5.0 -4.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS01255 -4.4 -14.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS04975 -4.2 -2.9 peptide deformylase compare
ABZR87_RS13705 -4.0 -2.7 integration host factor subunit alpha compare
ABZR87_RS00435 -4.0 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS02590 -3.7 -11.6 3-dehydroquinate synthase compare
ABZR87_RS07050 -3.6 -2.3 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS10170 -3.6 -6.0 RseA family anti-sigma factor compare
ABZR87_RS05305 -3.6 -10.9 TetR family transcriptional regulator compare
ABZR87_RS02445 -3.5 -4.8 Sec-independent protein translocase protein TatB compare
ABZR87_RS02440 -3.5 -8.8 twin-arginine translocase subunit TatC compare
ABZR87_RS07510 -3.3 -5.5 LysR family transcriptional regulator compare
ABZR87_RS16170 -3.3 -3.2 argininosuccinate lyase compare
ABZR87_RS04865 -3.2 -4.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS08695 -3.2 -14.7 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS22920 -3.1 -6.1 phosphogluconate dehydratase compare
ABZR87_RS08970 -3.1 -8.9 protein TolQ compare
ABZR87_RS06400 -3.1 -5.6 response regulator transcription factor compare
ABZR87_RS12790 -2.9 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS05100 -2.9 -3.8 RNA polymerase-binding protein DksA compare
ABZR87_RS08985 -2.8 -13.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS02160 -2.8 -6.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS09515 -2.8 -2.7 cysteine synthase CysM compare
ABZR87_RS11245 -2.8 -5.7 translational GTPase TypA compare
ABZR87_RS08990 -2.7 -4.7 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS16960 -2.7 -4.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02640 -2.7 -10.1 diaminopimelate decarboxylase compare
ABZR87_RS08700 -2.7 -7.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07625 -2.7 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS10085 -2.7 -2.6 Rne/Rng family ribonuclease compare
ABZR87_RS09935 -2.7 -1.8 amino acid aminotransferase compare
ABZR87_RS09465 -2.6 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS13790 -2.6 -8.8 chorismate synthase compare
ABZR87_RS07620 -2.5 -1.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS01245 -2.5 -1.7 Dps family protein compare
ABZR87_RS14375 -2.5 -3.8 fumarate hydratase compare
ABZR87_RS20555 -2.5 -4.2 helix-turn-helix transcriptional regulator compare
ABZR87_RS13300 -2.5 -6.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS11010 -2.5 -2.7 oxidative damage protection protein compare
ABZR87_RS09615 -2.4 -1.5 50S ribosomal protein L19 compare
ABZR87_RS01615 -2.4 -1.2 RNB domain-containing ribonuclease compare
ABZR87_RS12785 -2.4 -5.9 endopeptidase La compare
ABZR87_RS02155 -2.4 -9.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS08625 -2.4 -1.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00360 -2.3 -2.7 acyl-CoA desaturase compare
ABZR87_RS04995 -2.3 -2.7 DNA topoisomerase III compare
ABZR87_RS01035 -2.3 -6.0 histidine utilization repressor compare
ABZR87_RS14500 -2.3 -11.4 tryptophan synthase subunit beta compare
ABZR87_RS01675 -2.2 -1.5 carbohydrate kinase family protein compare
ABZR87_RS17145 -2.2 -12.4 AMP nucleosidase compare
ABZR87_RS08795 -2.2 -3.2 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS04945 -2.2 -2.5 DUF4390 domain-containing protein compare
ABZR87_RS06385 -2.2 -7.9 CHASE3 domain-containing protein compare
ABZR87_RS00875 -2.2 -3.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS11140 -2.2 -1.9 cbb3-type cytochrome oxidase assembly protein CcoS compare
ABZR87_RS12795 -2.2 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS21285 -2.2 -2.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01240 -2.2 -8.2 catalase/peroxidase HPI compare
ABZR87_RS04940 -2.1 -6.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS14190 -2.1 -9.1 DUF2589 domain-containing protein compare
ABZR87_RS02380 -2.1 -9.4 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS10175 -2.0 -4.9 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS13175 -2.0 -2.0 tRNA-Leu compare
ABZR87_RS02595 -2.0 -7.7 shikimate kinase compare
ABZR87_RS21950 -2.0 -8.3 hypothetical protein compare
ABZR87_RS15715 -2.0 -6.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS13645 -2.0 -1.3 hypothetical protein compare
ABZR87_RS13250 -1.9 -1.5 phosphoserine phosphatase SerB compare
ABZR87_RS14605 -1.9 -10.6 aconitate hydratase AcnA compare
ABZR87_RS00795 -1.9 -3.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS00970 -1.9 -1.3 molecular chaperone DnaJ compare
ABZR87_RS06845 -1.9 -8.9 heme o synthase compare
ABZR87_RS02850 -1.9 -2.7 elongation factor Tu compare
ABZR87_RS14505 -1.9 -3.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS02375 -1.8 -6.9 cytochrome c1 compare
ABZR87_RS05645 -1.8 -4.7 SDR family oxidoreductase compare
ABZR87_RS06715 -1.8 -3.1 PTS sugar transporter subunit IIA compare
ABZR87_RS06350 -1.8 -7.3 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS17650 -1.8 -5.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS05590 -1.8 -1.2 orotate phosphoribosyltransferase compare
ABZR87_RS11435 -1.8 -2.7 Mth938-like domain-containing protein compare
ABZR87_RS14950 -1.8 -1.7 acetolactate synthase small subunit compare
ABZR87_RS07035 -1.7 -6.7 RNase adapter RapZ compare
ABZR87_RS16055 -1.7 -4.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS10980 -1.7 -1.0 tRNA-Leu compare
ABZR87_RS12120 -1.7 -1.2 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS14490 -1.7 -7.1 tryptophan synthase subunit alpha compare
ABZR87_RS10190 -1.7 -6.3 translation elongation factor 4 compare
ABZR87_RS08980 -1.7 -2.2 cell envelope integrity protein TolA compare
ABZR87_RS11940 -1.7 -2.2 SsrA-binding protein SmpB compare
ABZR87_RS14965 -1.7 -3.8 DUF3619 family protein compare
ABZR87_RS10785 -1.7 -2.7 exodeoxyribonuclease V subunit beta compare
ABZR87_RS08650 -1.6 -7.9 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS14535 -1.6 -3.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS01980 -1.6 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS07055 -1.6 -7.3 ribosome-associated translation inhibitor RaiA compare
ABZR87_RS13475 -1.6 -6.1 PAS domain S-box protein compare
ABZR87_RS02385 -1.6 -3.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS07355 -1.6 -5.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS20680 -1.6 -3.2 SDR family oxidoreductase compare
ABZR87_RS01280 -1.5 -3.6 tRNA guanosine(34) transglycosylase Tgt compare
ABZR87_RS07635 -1.5 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS10400 -1.5 -1.5 hypothetical protein compare
ABZR87_RS02550 -1.5 -2.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS04235 -1.5 -6.4 heavy metal translocating P-type ATPase compare
ABZR87_RS10780 -1.5 -2.0 PD-(D/E)XK nuclease family protein compare
ABZR87_RS04270 -1.5 -4.7 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS02075 -1.5 -1.6 23S ribosomal RNA compare
ABZR87_RS16185 -1.5 -2.2 dCTP deaminase compare
ABZR87_RS13285 -1.5 -8.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS23095 -1.5 -1.3 MarR family transcriptional regulator compare
ABZR87_RS05350 -1.5 -1.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00835 -1.5 -1.7 argininosuccinate synthase compare
ABZR87_RS01885 -1.5 -3.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS01645 -1.4 -3.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS13290 -1.4 -3.0 3-ketoacyl-ACP reductase compare
ABZR87_RS02145 -1.4 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS06705 -1.4 -8.5 glutamate--cysteine ligase compare
ABZR87_RS07380 -1.4 -8.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS16080 -1.4 -0.9 P-II family nitrogen regulator compare
ABZR87_RS02555 -1.4 -3.7 ABC transporter ATP-binding protein compare
ABZR87_RS00830 -1.4 -3.9 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS12945 -1.4 -2.4 GPO family capsid scaffolding protein compare
ABZR87_RS06855 -1.4 -3.0 RNA polymerase sigma factor RpoH compare
ABZR87_RS21095 -1.4 -0.9 TRAP transporter small permease compare
ABZR87_RS14330 -1.4 -1.0 hypothetical protein compare
ABZR87_RS17910 -1.4 -5.5 IclR family transcriptional regulator compare
ABZR87_RS16125 -1.4 -4.0 heme biosynthesis protein HemY compare
ABZR87_RS15225 -1.4 -5.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS10610 -1.4 -0.9 inositol monophosphatase family protein compare
ABZR87_RS11815 -1.3 -6.2 [protein-PII] uridylyltransferase compare
ABZR87_RS12780 -1.3 -1.1 HU family DNA-binding protein compare
ABZR87_RS02655 -1.3 -5.5 anti-sigma factor compare
ABZR87_RS09445 -1.3 -5.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS01275 -1.3 -3.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABZR87_RS10800 -1.3 -2.7 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS12150 -1.3 -2.4 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS15705 -1.3 -3.4 UvrD-helicase domain-containing protein compare
ABZR87_RS14540 -1.3 -4.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01225 -1.3 -1.1 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS02140 -1.3 -8.1 anthranilate synthase component I compare
ABZR87_RS15680 -1.3 -5.6 DNA polymerase I compare
ABZR87_RS02630 -1.3 -3.9 iron donor protein CyaY compare
ABZR87_RS01270 -1.2 -5.9 ATP-dependent DNA helicase RecG compare
ABZR87_RS04880 -1.2 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS01745 -1.2 -2.9 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS10395 -1.2 -3.6 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS02545 -1.2 -4.3 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS12950 -1.2 -4.3 phage major capsid protein, P2 family compare
ABZR87_RS09625 -1.2 -5.7 CobD/CbiB family protein compare
ABZR87_RS21815 -1.2 -1.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS12955 -1.2 -2.9 terminase endonuclease subunit compare
ABZR87_RS10120 -1.2 -1.3 YceD family protein compare
ABZR87_RS09975 -1.2 -2.3 Fe-S cluster assembly transcriptional regulator IscR compare
ABZR87_RS18105 -1.2 -1.4 hypothetical protein compare
ABZR87_RS07705 -1.2 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS05060 -1.2 -3.1 DUF484 family protein compare
ABZR87_RS12970 -1.1 -2.0 putative holin compare
ABZR87_RS22405 -1.1 -1.0 hypothetical protein compare
ABZR87_RS21955 -1.1 -3.7 hypothetical protein compare
ABZR87_RS02540 -1.1 -4.6 VacJ family lipoprotein compare
ABZR87_RS12145 -1.1 -4.0 7-carboxy-7-deazaguanine synthase compare
ABZR87_RS06645 -1.1 -1.7 TlpA disulfide reductase family protein compare
ABZR87_RS11145 -1.1 -6.9 cytochrome-c oxidase, cbb3-type subunit I compare
ABZR87_RS11015 -1.1 -2.3 amino-acid N-acetyltransferase compare
ABZR87_RS12965 -1.1 -3.9 tail protein X compare
ABZR87_RS06745 -1.1 -4.0 S41 family peptidase compare
ABZR87_RS11330 -1.1 -2.9 transcriptional repressor LexA compare
ABZR87_RS03265 -1.1 -2.2 high-potential iron-sulfur protein compare
ABZR87_RS17235 -1.1 -2.5 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS07470 -1.1 -4.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16860 -1.1 -2.8 response regulator compare
ABZR87_RS07965 -1.1 -3.3 recombinase RecA compare
ABZR87_RS04265 -1.1 -4.9 phenylalanine 4-monooxygenase compare
ABZR87_RS20075 -1.1 -1.9 DUF2892 domain-containing protein compare
ABZR87_RS07360 -1.1 -5.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02570 -1.1 -8.2 glutamate synthase-related protein compare
ABZR87_RS01555 -1.1 -1.1 barstar family protein compare
ABZR87_RS02035 -1.0 -2.6 substrate-binding domain-containing protein compare
ABZR87_RS09000 -1.0 -4.5 7-cyano-7-deazaguanine synthase QueC compare
ABZR87_RS11185 -1.0 -5.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS16250 -1.0 -2.9 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS08585 -1.0 -1.6 chemotaxis protein CheW compare
ABZR87_RS19050 -1.0 -2.8 glycosyltransferase family 39 protein compare
ABZR87_RS17440 -1.0 -1.2 (2Fe-2S)-binding protein compare
ABZR87_RS03665 -1.0 -3.1 MarR family transcriptional regulator compare
ABZR87_RS12665 -1.0 -1.4 ABC transporter ATP-binding protein compare
ABZR87_RS16130 -1.0 -3.6 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS09440 -1.0 -2.9 DUF2059 domain-containing protein compare
ABZR87_RS03780 -1.0 -1.6 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS23415 -1.0 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS04725 -1.0 -0.8 universal stress protein compare
ABZR87_RS01250 -1.0 -4.4 hypothetical protein compare
ABZR87_RS08375 -1.0 -4.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07700 -1.0 -0.7 peptidylprolyl isomerase compare
ABZR87_RS07710 -1.0 -3.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS07760 -1.0 -1.7 HlyC/CorC family transporter compare
ABZR87_RS20875 -1.0 -3.0 LysR family transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment