Experiment set3IT027 for Ralstonia sp. UNC404CL21Col

Compare to:

soil sample 9; outgrowth in LB

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS01375 +8.7 66.5 two-component system hybrid sensor histidine kinase/response regulator PhcR compare
ABZR87_RS01430 +8.1 41.4 LysR family transcriptional regulator compare
ABZR87_RS01370 +5.3 13.1 ATP-binding protein compare
ABZR87_RS08040 +4.9 34.7 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS01215 +4.6 28.3 PilT/PilU family type 4a pilus ATPase compare
ABZR87_RS01365 +3.4 9.3 class I SAM-dependent methyltransferase PhcB compare
ABZR87_RS17930 +2.9 20.7 flagellar transcriptional regulator FlhD compare
ABZR87_RS18850 +2.9 21.3 PAS domain-containing methyl-accepting chemotaxis protein compare
ABZR87_RS22285 +2.9 15.0 flagellar basal body rod protein FlgC compare
ABZR87_RS01220 +2.9 21.6 type IV pilus twitching motility protein PilT compare
ABZR87_RS09500 +2.8 14.8 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS03075 +2.7 20.8 AGE family epimerase/isomerase compare
ABZR87_RS22060 +2.7 15.9 flagellar export protein FliJ compare
ABZR87_RS22275 +2.7 22.0 flagellar hook protein FlgE compare
ABZR87_RS22255 +2.7 15.9 flagellar basal body P-ring protein FlgI compare
ABZR87_RS19495 +2.6 16.6 helix-turn-helix transcriptional regulator compare
ABZR87_RS22210 +2.6 21.4 flagellar type III secretion system pore protein FliP compare
ABZR87_RS22270 +2.6 18.1 flagellar basal-body rod protein FlgF compare
ABZR87_RS22080 +2.6 22.0 flagellar basal-body MS-ring/collar protein FliF compare
ABZR87_RS22220 +2.6 19.8 flagellar biosynthetic protein FliR compare
ABZR87_RS17935 +2.6 20.0 flagellar transcriptional regulator FlhC compare
ABZR87_RS22055 +2.6 13.3 flagellar hook-length control protein FliK compare
ABZR87_RS22065 +2.6 18.7 flagellar protein export ATPase FliI compare
ABZR87_RS22260 +2.6 15.9 flagellar basal body L-ring protein FlgH compare
ABZR87_RS18025 +2.6 18.2 flagellar biosynthesis protein FlhA compare
ABZR87_RS22265 +2.5 17.2 flagellar basal-body rod protein FlgG compare
ABZR87_RS08750 +2.4 10.3 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS22290 +2.4 15.5 flagellar basal body rod protein FlgB compare
ABZR87_RS22075 +2.4 13.4 flagellar motor switch protein FliG compare
ABZR87_RS22295 +2.4 21.6 flagellar basal body P-ring formation chaperone FlgA compare
ABZR87_RS22205 +2.4 13.9 flagellar biosynthetic protein FliO compare
ABZR87_RS18015 +2.3 15.7 flagellar biosynthesis protein FlhB compare
ABZR87_RS07735 +2.3 15.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS09505 +2.3 12.6 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS22195 +2.2 17.4 flagellar motor switch protein FliM compare
ABZR87_RS22280 +2.2 6.2 flagellar hook assembly protein FlgD compare
ABZR87_RS15810 +2.2 11.4 hypothetical protein compare
ABZR87_RS17950 +2.1 11.4 flagellar motor protein MotB compare
ABZR87_RS22190 +2.1 7.0 flagellar basal body-associated protein FliL compare
ABZR87_RS17945 +2.1 16.9 flagellar motor stator protein MotA compare
ABZR87_RS18040 +2.1 16.6 RNA polymerase sigma factor FliA compare
ABZR87_RS06395 +2.0 12.8 response regulator compare
ABZR87_RS22175 +2.0 13.1 flagellin compare
ABZR87_RS18030 +2.0 12.8 flagellar biosynthesis protein FlhF compare
ABZR87_RS11170 +1.9 2.7 FixH family protein compare
ABZR87_RS22250 +1.9 11.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
ABZR87_RS22245 +1.8 16.4 flagellar hook-associated protein FlgK compare
ABZR87_RS07020 +1.8 12.1 dynamin-like GTPase family protein compare
ABZR87_RS14910 +1.7 5.5 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS22240 +1.7 12.5 flagellar hook-associated protein FlgL compare
ABZR87_RS15485 +1.7 5.3 glycosyltransferase family 2 protein compare
ABZR87_RS17295 +1.6 10.5 PAS domain-containing methyl-accepting chemotaxis protein compare
ABZR87_RS22305 +1.5 7.4 flagella synthesis protein FlgN compare
ABZR87_RS08045 +1.5 3.9 zinc-finger domain-containing protein compare
ABZR87_RS11175 +1.4 7.2 hypothetical protein compare
ABZR87_RS23180 +1.4 2.5 ABC transporter ATP-binding protein compare
ABZR87_RS15480 +1.4 10.4 glycosyltransferase family 25 protein compare
ABZR87_RS00385 +1.4 3.1 response regulator transcription factor compare
ABZR87_RS15500 +1.3 8.4 glycosyltransferase compare
ABZR87_RS10875 +1.3 9.5 RNA polymerase sigma factor RpoS compare
ABZR87_RS14340 +1.3 6.6 methyl-accepting chemotaxis protein compare
ABZR87_RS17995 +1.3 5.2 chemotaxis response regulator CheY compare
ABZR87_RS00265 +1.3 8.0 chloride channel protein compare
ABZR87_RS15250 +1.3 6.8 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS10585 +1.2 3.4 LysR family transcriptional regulator compare
ABZR87_RS13130 +1.2 3.1 ogr/Delta-like zinc finger family protein compare
ABZR87_RS16180 +1.2 0.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS10870 +1.2 6.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS19215 +1.2 8.1 EAL domain-containing protein compare
ABZR87_RS18000 +1.1 3.4 protein phosphatase CheZ compare
ABZR87_RS21075 +1.1 5.1 MerR family transcriptional regulator compare
ABZR87_RS21110 +1.0 3.5 GntR family transcriptional regulator compare
ABZR87_RS09715 +1.0 4.3 hypothetical protein compare
ABZR87_RS00390 +1.0 7.4 hybrid sensor histidine kinase/response regulator compare
ABZR87_RS13010 +1.0 2.1 GPW/gp25 family protein compare
ABZR87_RS20370 +1.0 1.6 ABC transporter ATP-binding protein compare
ABZR87_RS12130 +1.0 1.4 LysR substrate-binding domain-containing protein compare
ABZR87_RS05010 +1.0 1.3 rod shape-determining protein RodA compare
ABZR87_RS23235 +1.0 5.1 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS23295 +0.9 1.2 hypothetical protein compare
ABZR87_RS00260 +0.9 4.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS09035 +0.9 6.1 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS11320 +0.9 1.9 cupin domain-containing protein compare
ABZR87_RS16855 +0.9 4.4 chemotaxis protein CheC compare
ABZR87_RS22335 +0.9 6.9 GGDEF and EAL domain-containing protein compare
ABZR87_RS19545 +0.9 3.7 CpaF family protein compare
ABZR87_RS00445 +0.8 4.3 cold-shock protein compare
ABZR87_RS16975 +0.8 2.8 hypothetical protein compare
ABZR87_RS00100 +0.8 2.2 hypothetical protein compare
ABZR87_RS22165 +0.8 3.2 flagellar export chaperone FliS compare
ABZR87_RS08915 +0.8 1.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS15490 +0.8 4.8 glycosyltransferase family 2 protein compare
ABZR87_RS08685 +0.8 7.4 hypothetical protein compare
ABZR87_RS17990 +0.8 3.7 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS16845 +0.8 1.0 hypothetical protein compare
ABZR87_RS06495 +0.8 1.7 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS18990 +0.8 5.1 flagellar brake protein compare
ABZR87_RS05130 +0.8 1.1 CsbD family protein compare
ABZR87_RS11990 +0.8 1.4 hypothetical protein compare
ABZR87_RS08690 +0.8 6.9 polysaccharide biosynthesis protein compare
ABZR87_RS05995 +0.8 1.2 VOC family protein compare
ABZR87_RS05015 +0.8 0.9 penicillin-binding protein 2 compare
ABZR87_RS06405 +0.7 0.7 hypothetical protein compare
ABZR87_RS11905 +0.7 1.7 M24 family metallopeptidase compare
ABZR87_RS12330 +0.7 2.7 hypothetical protein compare
ABZR87_RS15495 +0.7 5.4 O-antigen ligase family protein compare
ABZR87_RS10525 +0.7 0.8 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS13125 +0.7 2.7 hypothetical protein compare
ABZR87_RS06345 +0.7 2.8 SDR family oxidoreductase compare
ABZR87_RS02480 +0.7 0.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS01750 +0.7 4.4 sigma-54 dependent transcriptional regulator compare
ABZR87_RS10275 +0.7 1.6 DUF5818 domain-containing protein compare
ABZR87_RS11760 +0.7 1.0 membrane protein compare
ABZR87_RS22480 +0.7 4.1 FAD/NAD(P)-binding oxidoreductase compare
ABZR87_RS18255 +0.7 1.6 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS08740 +0.7 6.0 hypothetical protein compare
ABZR87_RS17965 +0.7 2.6 chemotaxis protein CheW compare
ABZR87_RS19570 +0.7 5.2 TadG family pilus assembly protein compare
ABZR87_RS04990 +0.7 1.4 thioredoxin family protein compare
ABZR87_RS22645 +0.7 1.5 hypothetical protein compare
ABZR87_RS20985 +0.7 2.2 hypothetical protein compare
ABZR87_RS22160 +0.7 2.9 flagellar protein FliT compare
ABZR87_RS08725 +0.7 6.0 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS16885 +0.7 1.3 hypothetical protein compare
ABZR87_RS03930 +0.7 2.0 glycine cleavage system protein GcvH compare
ABZR87_RS06880 +0.7 2.6 VOC family protein compare
ABZR87_RS19530 +0.6 3.3 Flp pilus assembly protein CpaB compare
ABZR87_RS17115 +0.6 1.8 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS18830 +0.6 2.4 NIPSNAP family protein compare
ABZR87_RS08705 +0.6 5.8 glycosyltransferase family 4 protein compare
ABZR87_RS20785 +0.6 1.0 DUF2783 domain-containing protein compare
ABZR87_RS21045 +0.6 1.6 cyclopropane-fatty-acyl-phospholipid synthase family protein compare
ABZR87_RS12605 +0.6 1.8 ABC transporter ATP-binding protein compare
ABZR87_RS19345 +0.6 2.6 glutaminase compare
ABZR87_RS11225 +0.6 4.0 DHA2 family efflux MFS transporter permease subunit compare
ABZR87_RS13120 +0.6 2.6 helix-turn-helix transcriptional regulator compare
ABZR87_RS08730 +0.6 5.7 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR87_RS22485 +0.6 2.4 FAD-dependent oxidoreductase compare
ABZR87_RS22170 +0.6 4.0 flagellar filament capping protein FliD compare
ABZR87_RS17960 +0.6 3.5 chemotaxis protein CheA compare
ABZR87_RS10295 +0.6 2.1 hypothetical protein compare
ABZR87_RS17110 +0.6 3.0 glycosyltransferase family 90 protein compare
ABZR87_RS16720 +0.6 0.8 collagen-like triple helix repeat-containing protein compare
ABZR87_RS00455 +0.6 1.8 DUF4126 domain-containing protein compare
ABZR87_RS06775 +0.6 2.7 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
ABZR87_RS14680 +0.6 0.7 SDR family oxidoreductase compare
ABZR87_RS12180 +0.6 3.1 hypothetical protein compare
ABZR87_RS22300 +0.6 0.8 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS08205 +0.6 1.0 hypothetical protein compare
ABZR87_RS19750 +0.6 1.4 DNA-binding domain-containing protein compare
ABZR87_RS03625 +0.5 1.3 hypothetical protein compare
ABZR87_RS14890 +0.5 0.8 preprotein translocase subunit SecG compare
ABZR87_RS22775 +0.5 3.3 urea ABC transporter ATP-binding protein UrtD compare
ABZR87_RS21480 +0.5 2.0 efflux RND transporter periplasmic adaptor subunit compare
ABZR87_RS04295 +0.5 2.2 HU family DNA-binding protein compare
ABZR87_RS05025 +0.5 0.4 rod shape-determining protein MreC compare
ABZR87_RS08035 +0.5 3.4 nuclear transport factor 2 family protein compare
ABZR87_RS15860 +0.5 3.2 LPS N-acetylglucosaminyl transferase compare
ABZR87_RS20795 +0.5 1.5 peptide chain release factor H compare
ABZR87_RS10425 +0.5 2.9 DNA internalization-related competence protein ComEC/Rec2 compare
ABZR87_RS02010 +0.5 1.3 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
ABZR87_RS10835 +0.5 2.4 ABC transporter ATP-binding protein compare
ABZR87_RS22125 +0.5 1.6 GNAT family protein compare
ABZR87_RS15305 +0.5 1.4 pyroglutamyl-peptidase I compare
ABZR87_RS05275 +0.5 2.4 winged helix-turn-helix domain-containing protein compare
ABZR87_RS09180 +0.5 2.5 thioredoxin domain-containing protein compare
ABZR87_RS07785 +0.5 1.6 hypothetical protein compare
ABZR87_RS19525 +0.5 3.2 TadE/TadG family type IV pilus assembly protein compare
ABZR87_RS19010 +0.5 1.3 acyloxyacyl hydrolase compare
ABZR87_RS19115 +0.5 3.0 amino acid deaminase compare
ABZR87_RS06300 +0.5 1.0 SDR family oxidoreductase compare
ABZR87_RS17245 +0.5 1.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS22520 +0.5 0.9 ABATE domain-containing protein compare
ABZR87_RS14780 +0.5 1.3 MaoC family dehydratase compare
ABZR87_RS15850 +0.5 3.8 exopolysaccharide Pel transporter PelG compare
ABZR87_RS14980 +0.5 1.7 alpha/beta fold hydrolase compare
ABZR87_RS11675 +0.5 2.0 disulfide bond formation protein B compare
ABZR87_RS08785 +0.5 1.4 YkgJ family cysteine cluster protein compare
ABZR87_RS22780 +0.5 1.8 urea ABC transporter ATP-binding subunit UrtE compare
ABZR87_RS10930 +0.5 0.9 outer membrane protein assembly factor BamB compare
ABZR87_RS08305 +0.5 1.4 antibiotic biosynthesis monooxygenase family protein compare
ABZR87_RS11790 +0.5 0.6 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS01755 +0.5 3.3 ATP-binding protein compare
ABZR87_RS13835 +0.5 2.9 DUF2069 domain-containing protein compare
ABZR87_RS21825 +0.5 1.8 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS18685 +0.5 1.6 sugar ABC transporter permease compare
ABZR87_RS08875 +0.5 1.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS20450 +0.5 0.7 HAD family phosphatase compare
ABZR87_RS21150 +0.5 1.2 branched-chain amino acid ABC transporter permease compare
ABZR87_RS21660 +0.5 1.2 methyl-accepting chemotaxis protein compare
ABZR87_RS18180 +0.5 1.0 hypothetical protein compare
ABZR87_RS18155 +0.4 2.0 LysR family transcriptional regulator compare
ABZR87_RS14650 +0.4 2.3 glutathione S-transferase compare
ABZR87_RS07605 +0.4 1.4 D-aminoacyl-tRNA deacylase compare
ABZR87_RS23380 +0.4 0.9 chemotaxis protein CheW compare
ABZR87_RS22860 +0.4 1.0 hypothetical protein compare
ABZR87_RS16155 +0.4 1.4 ferritin-like domain-containing protein compare
ABZR87_RS20675 +0.4 1.9 cupin domain-containing protein compare
ABZR87_RS08680 +0.4 2.7 glycosyltransferase compare
ABZR87_RS14675 +0.4 0.5 glyoxalase compare


Specific Phenotypes

For 2 genes in this experiment