Experiment set3IT026 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with 1-ethyl-3-methylimidazolium chloride 80 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2005 -3.4 -3.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_407 -3.3 -2.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_1307 -3.0 -3.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4640 -2.8 -6.3 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_1451 -2.6 -4.9 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf1N1B4_888 -2.5 -5.9 Transglycosylase, Slt family compare
Pf1N1B4_2223 -2.4 -8.6 FIG006231: RNA-binding protein compare
Pf1N1B4_2283 -2.3 -1.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4636 -2.1 -3.0 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2959 -2.1 -5.4 FIG067310: hypothetical protein compare
Pf1N1B4_1 -2.0 -2.3 Colicin V production protein compare
Pf1N1B4_2791 -2.0 -2.9 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2783 -1.9 -2.7 Transcription elongation factor GreB-related protein compare
Pf1N1B4_890 -1.9 -3.0 DNA recombination and repair protein RecO compare
Pf1N1B4_2105 -1.8 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_1544 -1.8 -6.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2284 -1.7 -4.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_275 -1.7 -2.6 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_5446 -1.6 -3.3 hypothetical protein compare
Pf1N1B4_2360 -1.6 -2.3 hypothetical protein compare
Pf1N1B4_5591 -1.6 -2.0 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_1234 -1.5 -3.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1492 -1.5 -1.7 FIG00959437: hypothetical protein compare
Pf1N1B4_758 -1.5 -3.6 Bacterioferritin compare
Pf1N1B4_958 -1.5 -2.5 Stringent starvation protein B compare
Pf1N1B4_4422 -1.5 -2.4 ABC transporter amino acid-binding protein compare
Pf1N1B4_2106 -1.5 -2.6 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_359 -1.5 -2.8 GGDEF domain protein compare
Pf1N1B4_4385 -1.5 -2.7 Gfa-like protein compare
Pf1N1B4_4765 -1.5 -3.3 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_2611 -1.5 -9.8 Excinuclease ABC subunit A compare
Pf1N1B4_615 -1.4 -2.1 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_3364 -1.4 -2.9 Cyn operon transcriptional activator compare
Pf1N1B4_4961 -1.4 -3.1 FIG00441227: hypothetical protein compare
Pf1N1B4_5018 -1.4 -2.5 FIG00962345: hypothetical protein compare
Pf1N1B4_2534 -1.4 -3.1 DnaJ-like protein DjlA compare
Pf1N1B4_2612 -1.4 -3.4 Putative transport protein compare
Pf1N1B4_739 -1.4 -4.0 Endonuclease III (EC 4.2.99.18) compare
Pf1N1B4_1211 -1.3 -4.0 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_2885 -1.3 -4.8 Paraquat-inducible protein A compare
Pf1N1B4_345 -1.3 -1.8 Integration host factor beta subunit compare
Pf1N1B4_4946 -1.3 -3.2 putative aminotransferase compare
Pf1N1B4_3864 -1.3 -3.9 Recombination protein RecR compare
Pf1N1B4_373 -1.2 -2.4 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_578 -1.2 -2.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1619 -1.2 -6.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_5074 -1.2 -2.4 Gluconate permease compare
Pf1N1B4_3745 -1.2 -2.7 Thiamin ABC transporter, transmembrane component compare
Pf1N1B4_3582 -1.2 -2.0 C-methyltransferase compare
Pf1N1B4_1508 -1.2 -2.2 Lysophospholipid acyltransferase compare
Pf1N1B4_1827 -1.2 -3.2 FIG00953482: hypothetical protein compare
Pf1N1B4_3559 -1.2 -8.3 Aromatic amino acid transport protein AroP compare
Pf1N1B4_3687 -1.2 -2.9 FIG00953885: hypothetical protein compare
Pf1N1B4_1154 -1.2 -2.8 FIG00957702: hypothetical protein compare
Pf1N1B4_3613 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_1057 -1.2 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2891 -1.2 -2.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_5513 -1.1 -2.9 hypothetical protein compare
Pf1N1B4_3885 -1.1 -3.6 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf1N1B4_4027 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_3119 -1.1 -2.3 Holin compare
Pf1N1B4_1906 -1.1 -2.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2886 -1.1 -7.2 Paraquat-inducible protein B compare
Pf1N1B4_1927 -1.1 -5.3 DNA recombination and repair protein RecF compare
Pf1N1B4_1450 -1.1 -2.7 LysR family transcriptional regulator PA4989 compare
Pf1N1B4_1527 -1.1 -2.7 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_5071 -1.1 -2.0 FIG00959535: hypothetical protein compare
Pf1N1B4_2917 -1.1 -5.6 FIG140336: TPR domain protein compare
Pf1N1B4_3858 -1.1 -3.4 FIG00954563: hypothetical protein compare
Pf1N1B4_4949 -1.1 -2.9 Formate dehydrogenase N gamma subunit (EC 1.2.1.2) compare
Pf1N1B4_3143 -1.1 -2.3 RecA protein compare
Pf1N1B4_1236 -1.1 -4.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_5072 -1.1 -2.5 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_2949 -1.1 -1.7 FIG00956396: hypothetical protein compare
Pf1N1B4_3091 -1.1 -2.6 Membrane-associated zinc metalloprotease compare
Pf1N1B4_3927 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1899 -1.0 -3.3 Gfa-like protein compare
Pf1N1B4_1869 -1.0 -5.0 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_3020 -1.0 -3.5 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_5722 -1.0 -1.6 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2874 -1.0 -1.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_198 -1.0 -2.3 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_1561 -1.0 -2.4 FIG00954300: hypothetical protein compare
Pf1N1B4_4847 -1.0 -2.5 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_1278 -1.0 -2.3 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily compare
Pf1N1B4_1159 -1.0 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_3980 -1.0 -2.2 Transcriptional regulator, HxlR family compare
Pf1N1B4_5618 -1.0 -2.5 Excinuclease ABC subunit C compare
Pf1N1B4_4855 -1.0 -2.0 Response regulator compare
Pf1N1B4_5340 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_13 -1.0 -2.3 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_4108 -1.0 -1.7 Hydrolase, alpha/beta fold family compare
Pf1N1B4_239 -1.0 -2.7 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_2714 -1.0 -2.9 FOG: TPR repeat, SEL1 subfamily compare
Pf1N1B4_2102 -1.0 -1.0 hypothetical protein compare
Pf1N1B4_1328 -1.0 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_26 -1.0 -4.5 Excinuclease ABC subunit B compare
Pf1N1B4_3972 -1.0 -3.0 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_6024 -0.9 -2.2 FIG00953292: hypothetical protein compare
Pf1N1B4_2412 -0.9 -2.5 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_5408 -0.9 -3.0 hypothetical protein compare
Pf1N1B4_3978 -0.9 -2.8 Catalase (EC 1.11.1.6) compare
Pf1N1B4_2228 -0.9 -2.8 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_4149 -0.9 -2.7 Probable lipoprotein signal peptide compare
Pf1N1B4_1608 -0.9 -2.0 FIG00956533: hypothetical protein compare
Pf1N1B4_4366 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_668 -0.9 -3.7 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf1N1B4_1958 -0.9 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5460 -0.9 -2.3 TolA protein compare
Pf1N1B4_2436 -0.9 -2.9 FIG00953563: hypothetical protein compare
Pf1N1B4_3363 -0.9 -3.6 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_1806 -0.9 -2.4 FIG00953743: hypothetical protein compare
Pf1N1B4_139 -0.9 -2.1 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_844 -0.9 -3.0 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
Pf1N1B4_1872 -0.9 -4.6 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_1785 -0.9 -2.4 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_6039 -0.9 -3.9 Endonuclease I precursor (EC 3.1.21.1) compare
Pf1N1B4_2359 -0.9 -2.0 Chemotaxis signal transduction protein compare
Pf1N1B4_2619 -0.9 -4.3 Putative potassium channel protein compare
Pf1N1B4_2474 -0.9 -2.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_5760 -0.9 -2.1 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_2082 -0.9 -1.9 Uncharacterized protein ImpA compare
Pf1N1B4_1733 -0.9 -4.6 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) compare
Pf1N1B4_5159 -0.9 -2.5 Cellulose synthase operon protein C compare
Pf1N1B4_5533 -0.9 -1.8 cobS protein, putative compare
Pf1N1B4_1389 -0.9 -1.9 Lysine decarboxylase family compare
Pf1N1B4_4111 -0.9 -2.0 Panthothenate synthetase compare
Pf1N1B4_1868 -0.9 -4.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_644 -0.9 -1.6 Cold shock protein CspC compare
Pf1N1B4_4873 -0.9 -3.1 clavaldehyde dehydrogenase compare
Pf1N1B4_4748 -0.9 -2.5 transporter, putative compare
Pf1N1B4_556 -0.9 -2.6 Gluconate permease compare
Pf1N1B4_1008 -0.8 -1.2 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_5113 -0.8 -2.6 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_883 -0.8 -1.5 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_3544 -0.8 -2.9 Nitroreductase family protein compare
Pf1N1B4_2889 -0.8 -2.3 FIG00954491: hypothetical protein compare
Pf1N1B4_2171 -0.8 -1.7 Tyrosine recombinase XerC compare
Pf1N1B4_5095 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5721 -0.8 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_1584 -0.8 -1.5 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_4375 -0.8 -3.3 Chromate transport protein ChrA compare
Pf1N1B4_5685 -0.8 -1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_5995 -0.8 -1.4 Transporter, MFS superfamily compare
Pf1N1B4_649 -0.8 -2.4 Small-conductance mechanosensitive channel compare
Pf1N1B4_591 -0.8 -2.8 Aldose 1-epimerase compare
Pf1N1B4_563 -0.8 -2.6 RNA polymerase sigma-70 factor compare
Pf1N1B4_53 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_6007 -0.8 -1.8 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_1574 -0.8 -3.1 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf1N1B4_6028 -0.8 -2.4 FIG00954052: hypothetical protein compare
Pf1N1B4_4176 -0.8 -1.6 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_616 -0.8 -2.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_5370 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_3855 -0.8 -2.1 Chromosome partition protein smc compare
Pf1N1B4_2083 -0.8 -2.2 Uncharacterized protein ImpB compare
Pf1N1B4_2453 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3936 -0.8 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_476 -0.8 -2.1 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_2823 -0.8 -1.6 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_4957 -0.8 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_3751 -0.8 -0.9 FIG00953060: hypothetical protein compare
Pf1N1B4_567 -0.8 -1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5880 -0.8 -1.8 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_3818 -0.8 -1.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_3549 -0.8 -1.7 YciL protein compare
Pf1N1B4_21 -0.8 -1.9 Probable hydrolase compare
Pf1N1B4_6037 -0.8 -1.8 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_5100 -0.8 -1.8 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_4602 -0.8 -1.2 Transcriptional regulators, LysR family compare
Pf1N1B4_3350 -0.8 -1.6 FIG00954807: hypothetical protein compare
Pf1N1B4_474 -0.7 -3.0 FIG00954461: hypothetical protein compare
Pf1N1B4_1993 -0.7 -0.8 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4078 -0.7 -2.6 GDP-mannose pyrophosphatase YffH compare
Pf1N1B4_2394 -0.7 -3.7 DNA ligase (EC 6.5.1.2) compare
Pf1N1B4_3468 -0.7 -1.5 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_201 -0.7 -1.5 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_4761 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1235 -0.7 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_1661 -0.7 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_2884 -0.7 -2.7 Paraquat-inducible protein A compare
Pf1N1B4_907 -0.7 -2.7 Probable glutathione s-transferase protein (EC 2.5.1.18) compare
Pf1N1B4_2029 -0.7 -1.5 FIG00953722: hypothetical protein compare
Pf1N1B4_846 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_475 -0.7 -3.0 ABC-type multidrug transport system, permease component compare
Pf1N1B4_724 -0.7 -2.0 DNA-binding response regulator ColR compare
Pf1N1B4_6004 -0.7 -2.2 tgtA5 cluster protein 1 compare
Pf1N1B4_5269 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_2206 -0.7 -3.2 FIG139438: lipoprotein B compare
Pf1N1B4_355 -0.7 -4.4 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf1N1B4_4903 -0.7 -2.1 ABC-type protease exporter, outer membrane component PrtF/AprF compare
Pf1N1B4_4004 -0.7 -1.5 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_835 -0.7 -1.7 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_3518 -0.7 -1.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1336 -0.7 -1.2 Putative multicopper oxidases compare
Pf1N1B4_1511 -0.7 -1.5 FIG027190: Putative transmembrane protein compare
Pf1N1B4_691 -0.7 -1.6 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_218 -0.7 -3.6 Periplasmic binding protein compare
Pf1N1B4_4669 -0.7 -1.5 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_5675 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress 1-ethyl-3-methylimidazolium chloride in Pseudomonas fluorescens FW300-N1B4

For stress 1-ethyl-3-methylimidazolium chloride across organisms